genome.fa.s5977.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005977.1 Hibiscus syriacus cultivar Beakdansim tig00014050_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108137

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9296--9442	45	3.2	45	92	2	222	39	21	12	25	1.89
13383--13431	18	2.7	18	81	9	55	12	0	24	63	1.29
19623--19667	2	22.5	2	100	0	90	48	0	0	51	1.00
23048--23074	2	13.5	2	100	0	54	51	0	0	48	1.00
23091--23163	24	3.0	24	81	0	83	39	20	15	24	1.91
23865--23996	29	4.6	29	86	4	187	51	17	2	28	1.57
23865--23995	56	2.3	58	89	4	194	51	16	2	29	1.57
25124--25169	22	2.0	24	87	8	69	43	17	0	39	1.49
37277--37308	2	16.5	2	93	6	57	50	0	0	50	1.00
37206--37290	34	2.5	34	94	0	152	58	0	0	41	0.98
39899--39959	12	5.1	12	72	7	52	16	13	18	52	1.75
39888--39959	24	3.0	24	83	0	90	18	12	16	52	1.74
41892--41921	2	14.5	2	93	6	51	46	0	3	50	1.18
42399--42460	23	2.7	23	82	10	72	59	1	6	32	1.32
49706--49747	21	2.0	21	95	0	75	50	19	4	26	1.67
50507--50562	23	2.4	23	100	0	112	60	14	16	8	1.57
50495--50562	23	2.9	24	91	4	86	64	11	14	8	1.49
50507--50548	13	3.5	13	75	18	54	61	14	14	9	1.55
59023--59050	2	14.0	2	100	0	56	50	0	0	50	1.00
62549--62624	2	38.0	2	100	0	152	50	0	0	50	1.00
76775--76842	35	1.9	35	84	0	91	38	20	19	22	1.94
77485--77524	20	2.0	20	95	0	71	25	27	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78548--78650	45	2.3	45	84	0	143	28	14	33	24	1.94
81950--82001	18	2.9	18	79	0	68	25	34	19	21	1.96
82759--82917	63	2.5	63	83	6	180	27	21	19	32	1.97
83890--83947	20	2.8	19	75	14	53	32	18	24	24	1.97
84774--84841	23	3.0	23	91	0	100	20	27	26	25	1.99
89412--89511	45	2.2	44	84	5	121	34	21	18	27	1.96
90366--90434	23	3.0	23	89	0	102	20	26	24	28	1.99
98244--98390	60	2.5	60	80	6	165	39	4	21	34	1.75
100905--101213	43	7.2	43	81	2	300	21	20	24	33	1.97
100905--101199	86	3.4	87	81	4	341	21	18	24	34	1.96
101573--101631	21	2.8	21	75	10	57	1	33	20	44	1.62
105474--105765	160	1.8	162	84	3	410	33	20	15	29	1.94
105824--105957	40	3.3	39	73	11	110	25	13	25	35	1.92
107375--107632	81	3.2	81	81	8	269	32	21	15	30	1.94
107399--107630	41	5.7	41	72	15	153	31	21	16	31	1.95

Tables:   1

The End!