genome.fa.s5978.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005978.1 Hibiscus syriacus cultivar Beakdansim tig00014052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77456

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1580--1655	12	6.3	12	73	10	66	19	15	18	46	1.85
1566--1675	48	2.3	50	82	4	127	17	17	18	47	1.83
1580--1655	24	3.2	24	86	0	107	19	15	18	46	1.85
5055--5127	24	3.0	24	87	0	119	26	8	28	36	1.85
9660--9732	24	3.0	24	87	0	110	24	10	28	35	1.90
12326--12385	22	2.8	21	78	16	61	50	0	0	50	1.00
12346--12385	21	1.9	21	90	10	64	47	0	0	52	1.00
12894--12947	14	3.9	14	80	9	74	11	14	14	59	1.62
13028--13081	14	3.9	14	80	9	74	11	14	14	59	1.62
12887--13160	134	2.0	134	100	0	548	24	14	10	49	1.76
13301--13357	24	2.5	24	88	5	82	12	7	21	59	1.56
23133--23166	12	2.8	12	100	0	68	5	26	26	41	1.78
23182--23272	21	4.4	21	78	10	116	16	20	27	35	1.94
23203--23295	40	2.3	41	96	3	179	15	21	25	37	1.92
23224--23292	20	3.5	20	67	21	63	13	23	24	39	1.90
23154--23356	61	3.3	62	78	8	227	19	20	25	34	1.96
23302--23437	41	3.4	41	87	4	179	17	20	25	36	1.94
23347--23437	19	4.5	21	70	18	75	17	18	25	38	1.92
23179--23415	102	2.3	102	86	7	354	17	20	25	35	1.95
23536--23583	6	8.5	6	95	4	75	35	47	16	0	1.47
23544--23591	10	4.5	10	86	5	51	35	43	20	0	1.52
24080--24115	6	6.0	6	100	0	72	0	16	50	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28651--28708	15	3.9	15	90	0	89	15	15	60	8	1.58
41509--41572	27	2.3	26	80	15	67	32	3	4	59	1.34
56190--56227	20	1.9	20	88	0	58	36	7	15	39	1.77
60135--60185	19	2.7	19	100	0	102	58	11	5	23	1.55
61412--61457	20	2.3	20	85	3	58	36	0	23	39	1.55
65930--66002	38	1.9	38	94	0	128	28	12	17	41	1.86
66838--66986	30	5.0	30	90	0	226	42	19	34	2	1.65
66933--66988	18	3.4	18	65	34	54	41	21	37	0	1.53
67677--68058	183	2.1	182	89	7	593	43	2	7	46	1.46
76839--77065	119	1.9	118	87	4	334	36	16	5	41	1.71

Tables:   1

The End!