genome.fa.s5979.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005979.1 Hibiscus syriacus cultivar Beakdansim tig00014055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185263

Tables:   1   

This is table  1  of  1  ( 119 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2690--2719	14	2.1	14	93	0	51	30	20	10	40	1.85
9322--9355	12	2.8	12	90	0	50	55	29	0	14	1.40
9481--9534	24	2.2	24	90	0	81	24	20	16	38	1.92
11785--11819	6	5.8	6	86	0	52	60	20	2	17	1.49
11786--11826	18	2.3	18	95	0	73	56	24	2	17	1.53
12111--12220	20	5.5	20	85	0	139	42	25	17	14	1.87
12322--12371	25	2.0	25	96	0	91	26	8	22	44	1.80
12757--12793	18	2.1	18	89	0	56	32	5	10	51	1.60
12749--12801	24	2.2	24	86	0	70	35	3	13	47	1.61
13037--13112	35	2.2	35	78	4	82	39	22	11	26	1.88
13104--13189	39	2.2	39	91	2	138	47	19	13	18	1.82
13489--13628	66	2.2	61	83	7	165	52	16	0	30	1.49
14997--15095	21	4.7	21	74	8	85	22	21	33	23	1.97
14997--15095	42	2.4	42	77	6	110	22	21	33	23	1.97
17557--17626	22	3.2	22	87	0	95	21	10	41	27	1.85
17757--17817	20	3.0	20	75	20	65	18	18	22	40	1.91
17804--17857	20	2.7	21	80	8	76	29	14	27	27	1.95
17965--18249	2	144.0	2	67	23	124	38	3	4	52	1.39
17967--18222	35	7.5	34	69	23	91	38	3	4	53	1.40
18061--18105	13	3.5	13	76	11	56	35	8	6	48	1.61
17947--18232	114	2.5	110	77	14	259	38	3	4	53	1.40
17970--18249	59	4.7	60	71	20	178	38	3	4	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18083--18238	45	3.6	44	77	14	130	39	3	3	53	1.35
17964--18245	39	7.6	37	69	20	121	38	3	4	53	1.39
22495--22549	13	4.2	13	90	0	83	27	21	16	34	1.95
22703--22736	2	17.5	2	93	6	61	50	0	0	50	1.00
29457--29481	2	12.5	2	100	0	50	52	0	0	48	1.00
31812--31903	3	30.3	3	79	10	53	58	2	1	38	1.17
31881--31910	14	2.1	14	100	0	60	66	0	0	33	0.92
32139--32674	45	11.8	45	92	1	847	32	17	23	25	1.97
32139--32674	137	3.9	136	93	1	878	32	17	23	25	1.97
33336--33393	22	2.6	22	97	0	107	36	13	17	32	1.89
33757--33969	55	4.0	55	86	6	276	27	19	14	38	1.90
35615--35744	43	3.0	43	87	0	179	36	7	30	26	1.84
37009--37280	135	2.0	135	92	0	454	31	22	14	31	1.94
41713--41749	17	2.1	18	95	5	67	70	0	10	18	1.16
42288--42695	158	2.6	155	77	11	368	44	8	8	39	1.64
42567--42597	2	15.5	2	100	0	62	48	0	0	51	1.00
42833--42869	14	2.6	15	79	12	51	67	8	0	24	1.17
45152--45231	26	3.1	26	96	0	151	26	30	15	28	1.96
48096--48142	20	2.5	18	77	12	58	51	4	21	23	1.65
49348--49463	60	1.9	60	82	3	144	34	6	5	53	1.50
54877--54936	23	2.6	23	89	0	75	41	10	15	33	1.80
54858--55023	87	1.9	87	92	0	278	39	12	15	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54980--55046	23	2.9	23	88	0	89	38	8	16	35	1.80
54877--55133	110	2.3	110	88	0	388	40	11	14	33	1.82
55074--55122	23	2.1	23	84	0	62	38	10	16	34	1.82
55522--56223	111	6.3	111	90	1	1073	44	11	12	31	1.78
55522--56224	223	3.1	222	89	1	1075	44	11	12	31	1.78
56186--56252	22	3.0	22	93	0	107	43	5	11	38	1.66
56708--56852	72	2.0	73	91	4	240	49	13	8	28	1.70
56781--57107	111	2.9	111	90	1	496	46	11	10	31	1.74
57083--57127	22	2.0	22	82	4	54	46	4	6	42	1.50
57525--57922	109	3.6	109	89	3	582	46	10	11	31	1.74
57525--57941	220	1.9	222	88	3	635	45	11	11	31	1.75
58380--58863	111	4.3	111	88	4	679	44	10	12	32	1.76
63205--63245	8	5.2	8	82	5	57	34	0	29	36	1.58
63318--64071	128	5.9	128	93	1	1262	22	24	20	32	1.98
63322--64071	255	2.9	256	92	1	1254	22	24	20	32	1.98
63318--64071	383	2.0	384	97	0	1420	22	24	20	32	1.98
64472--64571	33	3.0	34	83	2	139	39	3	4	54	1.35
65095--65164	21	3.3	20	90	5	95	18	27	35	18	1.94
65168--65215	21	2.3	21	85	0	60	22	12	39	25	1.89
66969--67043	33	2.3	33	84	6	91	64	4	0	32	1.12
71487--71545	30	2.0	30	89	0	91	16	35	15	32	1.90
78545--78571	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83088--83121	18	1.9	17	88	5	50	0	26	2	70	1.01
83231--83259	12	2.3	13	94	5	51	0	10	6	82	0.83
83578--83632	22	2.5	22	84	0	83	36	7	18	38	1.78
90056--90084	12	2.3	13	94	5	51	0	10	6	82	0.83
90402--90455	22	2.5	22	81	0	72	38	1	16	42	1.59
94344--94392	22	2.2	23	85	10	66	48	28	2	20	1.60
95539--95588	23	2.2	23	88	0	73	12	28	20	40	1.87
98605--98674	36	2.0	36	85	2	97	28	20	20	31	1.97
110360--110454	42	2.3	42	92	0	154	17	17	17	46	1.85
110614--110652	19	2.1	19	85	9	53	46	5	0	48	1.24
110623--110707	24	3.5	25	71	20	65	50	2	0	47	1.14
110662--110725	22	2.9	23	84	6	71	48	1	0	50	1.10
110797--110867	19	3.7	18	72	10	52	47	2	1	47	1.25
112919--112954	14	2.6	14	90	0	54	30	22	13	33	1.93
112962--113031	15	4.7	15	74	13	63	37	17	5	40	1.73
112971--113012	15	2.9	15	92	3	68	38	19	7	35	1.79
113363--113418	28	2.0	28	82	6	69	41	10	7	41	1.67
113399--113455	28	1.9	28	86	10	78	38	7	14	40	1.73
122666--122701	17	2.1	17	89	0	54	83	13	2	0	0.76
122666--122701	8	4.4	8	86	6	54	83	13	2	0	0.76
125359--125392	17	2.0	17	88	0	50	55	29	0	14	1.40
127329--127391	21	2.9	21	83	4	72	15	25	38	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136751--136792	20	2.1	20	95	0	75	54	0	40	4	1.21
137860--137910	24	2.2	22	80	13	59	54	1	0	43	1.11
144624--144671	25	1.9	25	83	8	62	29	6	8	56	1.53
145375--145418	7	6.3	7	94	0	79	43	15	0	40	1.47
146183--146430	113	2.2	112	83	8	299	42	7	14	35	1.73
147490--147856	110	3.3	110	81	7	390	36	7	14	40	1.76
148825--148859	15	2.3	15	100	0	70	31	14	28	25	1.95
150071--150129	29	2.0	29	100	0	118	23	13	13	49	1.78
153628--153715	29	3.0	29	96	0	158	25	11	13	50	1.75
159764--159806	15	2.8	15	89	3	59	60	0	37	2	1.10
159783--159830	11	4.5	11	80	15	55	62	0	37	0	0.95
159776--159824	21	2.4	20	89	3	80	63	0	36	0	0.95
160698--160729	16	2.0	16	93	0	55	43	21	0	34	1.53
160691--160747	26	2.2	26	78	12	64	45	15	3	35	1.64
161194--161225	16	2.0	16	93	0	55	43	21	0	34	1.53
161187--161243	26	2.2	26	78	12	64	45	15	3	35	1.64
160480--161474	496	2.0	496	98	0	1936	43	6	7	43	1.58
162735--162894	65	2.5	63	84	6	196	31	23	18	26	1.98
162872--162914	19	2.4	19	84	7	54	25	25	20	27	1.99
168254--168348	44	2.2	44	87	7	133	27	26	22	24	2.00
168254--168348	23	4.4	21	77	9	86	27	26	22	24	2.00
168273--168351	23	3.6	23	77	8	92	25	25	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172069--172107	21	1.9	20	89	5	60	5	7	10	76	1.13
172630--172712	3	27.7	3	82	4	105	60	0	3	36	1.14
172964--173624	113	5.8	113	89	1	986	28	19	12	39	1.89
172962--173617	226	2.9	226	95	1	1156	28	19	12	39	1.89
174238--174992	82	9.2	82	96	0	1307	36	21	13	28	1.92
176113--176198	11	7.8	11	73	19	81	2	16	0	81	0.79
176113--176202	15	5.4	17	79	17	100	2	16	0	81	0.80
176113--176202	20	4.7	19	81	10	78	2	16	0	81	0.80
176144--176197	5	10.8	5	81	15	58	0	14	0	85	0.61

Tables:   1

The End!