genome.fa.s598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000598.1 Hibiscus syriacus cultivar Beakdansim tig00001157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67793

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5805--5855	21	2.5	21	80	3	59	47	11	7	33	1.69
16199--16235	19	1.9	19	94	0	65	29	27	2	40	1.70
16248--16285	19	2.0	19	94	0	67	34	23	5	36	1.78
16452--16494	18	2.3	19	88	4	61	39	0	2	58	1.11
16452--16495	19	2.4	18	88	3	61	38	0	2	59	1.10
18510--18573	23	2.7	23	81	13	69	51	1	3	43	1.26
20765--20833	2	35.0	2	97	2	131	50	0	0	49	1.00
29086--29111	3	8.7	3	100	0	52	0	30	0	69	0.89
31933--31997	33	2.0	33	90	0	103	50	9	15	24	1.73
35871--35900	14	2.2	14	94	5	53	16	0	0	83	0.65
36729--36761	2	16.5	2	100	0	66	48	0	0	51	1.00
41389--41431	21	2.0	21	90	0	68	32	27	23	16	1.96
41458--41495	20	1.9	20	88	0	58	23	34	31	10	1.89
42124--42169	23	2.0	23	86	0	65	19	23	26	30	1.98
48438--48468	16	1.9	16	100	0	62	41	32	0	25	1.56
50262--50421	60	2.7	60	81	8	182	29	8	19	42	1.81
51793--51944	20	7.6	20	85	2	198	33	27	19	19	1.96
52460--52533	21	3.5	20	80	8	94	47	17	20	14	1.83
52578--52670	41	2.5	37	80	16	113	12	24	17	45	1.83
52605--52669	21	3.1	21	82	4	96	10	26	15	47	1.78
52561--52667	19	5.7	20	75	15	104	12	23	17	46	1.82
54349--54816	93	5.1	93	98	0	895	22	12	19	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54882--54938	14	3.7	14	72	20	51	43	24	22	8	1.81
54896--54987	19	5.4	18	72	24	65	46	28	17	7	1.75
54864--54987	33	3.7	33	91	1	185	45	27	17	8	1.78
54913--54971	14	3.9	14	76	20	64	47	28	16	6	1.72
54988--55101	33	3.3	33	81	11	147	7	21	22	47	1.77
54983--55085	19	5.7	19	77	11	108	8	22	23	45	1.80
55610--55645	14	2.6	14	95	0	63	33	0	22	44	1.53
55736--55823	19	4.8	19	79	14	114	48	15	21	13	1.80
55736--55842	53	2.0	53	96	1	198	46	16	23	13	1.82
55833--56125	72	4.2	68	77	13	249	14	21	18	45	1.84
55838--56040	105	1.9	105	100	0	406	14	22	17	45	1.84
55832--56061	19	12.7	19	81	15	292	14	23	16	45	1.85
55832--56061	33	6.4	38	79	16	292	14	23	16	45	1.85
55838--56106	52	5.1	52	87	6	382	13	21	17	46	1.83
55840--56106	105	2.6	105	90	4	389	13	21	17	46	1.83
58388--58412	12	2.1	12	100	0	50	0	28	0	72	0.86
58587--58633	24	2.0	24	87	8	69	38	21	14	25	1.92
59323--59552	20	11.5	20	84	1	210	19	17	25	37	1.94
59323--59552	60	3.8	60	81	2	239	19	17	25	37	1.94
67078--67188	54	2.1	54	98	0	213	35	0	3	60	1.20

Tables:   1

The End!