Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005981.1 Hibiscus syriacus cultivar Beakdansim tig00014058_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121613

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3320--3476
62
2.5
62
84
8
187
26
22
19
31
1.97
3442--3481
19
2.0
21
90
9
66
30
27
12
30
1.93
10568--10649
34
2.4
33
95
4
146
41
0
25
32
1.56
10578--10635
18
3.3
18
63
18
50
41
0
20
37
1.53
16082--16155
23
3.2
23
84
1
76
24
8
16
51
1.71
16111--16156
24
2.0
23
91
4
74
23
8
17
50
1.74
16215--16263
22
2.2
22
82
7
55
20
6
16
57
1.60
16227--16268
22
1.9
22
90
0
66
14
7
19
59
1.57
16490--16545
22
2.5
22
97
0
103
37
19
17
25
1.94
28716--28745
15
2.0
15
93
0
51
53
3
6
36
1.44
32206--32262
30
1.9
30
92
0
96
47
24
3
24
1.68
51681--51740
20
2.9
21
73
14
70
43
0
6
50
1.28
62510--64117
106
15.4
106
92
3
2548
33
25
18
23
1.97
70902--72142
4
310.5
4
98
0
2387
49
25
0
24
1.53
72507--72600
18
4.9
19
82
8
111
27
29
19
23
1.98
72504--72600
38
2.5
37
80
12
124
27
28
18
24
1.98
74794--74849
21
2.7
21
77
0
58
50
28
0
21
1.49
75566--75626
31
2.0
31
96
0
113
31
22
19
26
1.98
76034--76090
23
2.5
23
94
2
98
43
19
15
21
1.87
77628--77709
32
2.6
32
80
0
101
48
9
3
37
1.54
79706--79791
3
29.0
3
88
2
93
56
0
0
43
0.99
80044--80131
36
2.4
36
88
0
122
20
19
10
50
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80079--81191
113
9.8
113
88
2
1500
30
18
14
37
1.91
80079--81191
342
3.3
342
93
1
1792
30
18
14
37
1.91
81981--82251
83
3.3
83
95
1
463
35
21
14
28
1.93
94056--94122
23
2.9
23
80
6
73
59
1
1
37
1.16
96181--96260
3
27.0
3
84
2
108
60
0
0
40
0.97
100511--100643
30
4.4
30
96
0
239
32
23
20
24
1.98
100617--100710
31
3.1
30
75
4
89
30
23
18
27
1.97
100511--100668
60
2.6
60
89
1
217
33
24
19
22
1.97
100626--100721
31
3.1
30
74
12
88
32
20
19
27
1.97
101790--101950
64
2.5
63
80
5
189
24
24
19
31
1.98
102857--102899
21
2.0
21
81
0
50
27
30
25
16
1.97
102927--102965
20
2.0
20
89
0
60
23
33
28
15
1.95
103792--103887
31
3.1
30
71
12
79
27
19
20
32
1.97
103870--104049
30
6.0
30
96
0
324
25
19
22
32
1.97
106131--106200
36
1.9
36
88
5
106
15
21
35
27
1.94
106131--106192
18
3.4
18
95
0
106
14
22
33
29
1.94
106916--107023
51
2.1
51
91
0
180
36
3
11
49
1.56
113279--113317
20
2.0
20
94
0
69
48
0
0
51
1.00
119740--119806
26
2.3
29
78
19
86
17
13
19
49
1.80
119750--119804
26
2.0
28
89
6
87
16
10
18
54
1.70
121270--121314
20
2.2
20
96
0
81
17
24
31
26
1.97

Tables:   1

The End!