genome.fa.s5982.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005982.1 Hibiscus syriacus cultivar Beakdansim tig00014059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77415

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3698--3816	35	3.3	36	89	5	170	44	17	5	32	1.71
6582--6651	2	35.5	2	94	2	124	0	0	47	52	1.00
8004--8080	2	38.5	2	100	0	154	49	0	0	50	1.00
15976--16026	18	2.9	18	91	2	77	35	7	29	27	1.85
16058--16095	19	2.0	19	100	0	76	31	10	15	42	1.81
16769--16822	23	2.3	23	100	0	108	42	16	7	33	1.76
18064--18158	47	2.0	47	100	0	190	16	21	10	51	1.74
18082--18159	26	3.2	26	61	17	67	17	17	12	51	1.76
26170--26211	16	2.5	17	84	3	59	54	0	0	45	0.99
26470--26583	20	5.7	20	82	6	104	31	24	18	25	1.97
26467--26583	61	1.9	61	84	3	155	33	23	17	24	1.97
27116--27157	19	2.2	19	91	0	66	52	26	16	4	1.63
27161--27242	19	4.3	18	85	11	110	12	17	21	48	1.79
27161--27242	39	2.1	38	93	2	137	12	17	21	48	1.79
27172--27253	39	2.1	39	84	6	105	8	19	26	45	1.79
27225--27309	33	2.5	33	92	1	134	11	23	25	38	1.89
29361--29444	42	2.0	42	85	0	114	21	38	16	23	1.93
30841--30874	14	2.4	14	95	0	59	32	0	23	44	1.54
31052--31182	66	2.0	66	93	0	226	18	22	17	41	1.90
31127--31185	19	3.4	19	73	22	74	13	22	18	45	1.84
31059--31182	33	3.8	33	84	4	178	16	22	17	42	1.89
33476--33500	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33675--33728	24	2.2	24	86	0	72	38	20	14	25	1.91
34784--34841	20	2.9	20	97	0	107	37	24	22	15	1.93
34864--34937	19	4.5	16	83	16	66	13	20	18	47	1.82
34860--34927	19	3.8	19	87	12	101	13	22	17	47	1.82
35044--35080	14	2.6	14	86	0	56	48	21	0	29	1.50
35749--35815	19	3.5	19	83	4	89	37	23	23	14	1.93
35841--35922	19	4.6	19	79	14	95	12	20	20	46	1.83
35877--35961	19	4.4	19	80	5	82	15	22	22	40	1.91
36443--36487	18	2.5	18	88	0	72	13	15	44	26	1.83
37807--37849	20	2.2	20	95	0	77	53	18	18	9	1.70
38127--38170	22	2.0	22	95	0	79	18	15	45	20	1.85
38358--38410	20	2.7	20	93	0	88	24	18	28	28	1.98
38421--38513	20	4.6	20	75	4	87	18	23	18	39	1.92
38403--38513	41	2.7	41	92	4	179	18	21	18	42	1.89
38838--38862	7	3.6	7	100	0	50	12	0	24	64	1.27
43612--43691	33	2.4	33	89	4	117	32	5	5	57	1.42
43674--43700	12	2.2	12	100	0	54	40	7	0	51	1.30
51944--51974	14	2.3	14	94	5	55	35	25	3	35	1.72
59675--59849	89	2.0	89	91	2	289	34	20	12	32	1.90
63508--63547	20	2.1	19	85	4	53	40	2	0	57	1.12
63534--63567	15	2.3	15	94	0	59	61	0	0	38	0.96
69359--69809	173	2.6	173	85	1	600	34	17	20	27	1.95

Tables:   1

The End!