Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005983.1 Hibiscus syriacus cultivar Beakdansim tig00014064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 781742
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 4 of 5
Found at i:774038 original size:21 final size:21
Alignment explanation
Indices: 774012--774052 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
774002 CAAGCTTCGG
*
774012 GGGTTTCAGGTTTCAAATTTT
1 GGGTTTCAGATTTCAAATTTT
*
774033 GGGTTTCAGATTTTAAATTT
1 GGGTTTCAGATTTCAAATTT
774053 CCAATTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.49
Consensus pattern (21 bp):
GGGTTTCAGATTTCAAATTTT
Found at i:774039 original size:14 final size:14
Alignment explanation
Indices: 774020--774088 Score: 50
Period size: 14 Copynumber: 4.9 Consensus size: 14
774010 GGGGGTTTCA
774020 GGTTTCAAATTTTG
1 GGTTTCAAATTTTG
* *
774034 GGTTTCAGATTTTA
1 GGTTTCAAATTTTG
** *
774048 AATTTCCAATTTTGG
1 GGTTTCAAATTTT-G
* *
774063 GGTTT-GAATTTCG
1 GGTTTCAAATTTTG
*
774076 GGTTTCAAGTTTT
1 GGTTTCAAATTTT
774089 ACGTTTCGGT
Statistics
Matches: 39, Mismatches: 14, Indels: 4
0.68 0.25 0.07
Matches are distributed among these distances:
13 6 0.15
14 30 0.77
15 3 0.08
ACGTcount: A:0.20, C:0.09, G:0.22, T:0.49
Consensus pattern (14 bp):
GGTTTCAAATTTTG
Found at i:774122 original size:21 final size:20
Alignment explanation
Indices: 774092--774148 Score: 78
Period size: 21 Copynumber: 2.8 Consensus size: 20
774082 AAGTTTTACG
*
774092 TTTCGGTTTTGTGTTTCAAA
1 TTTCGGTTTTGGGTTTCAAA
774112 TTTCAGGTTTTGGGTTTCAAA
1 TTTC-GGTTTTGGGTTTCAAA
*
774133 TTTTGGGTTTTGGGTT
1 -TTTCGGTTTTGGGTT
774149 CGGGTTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 4 0.12
21 26 0.79
22 3 0.09
ACGTcount: A:0.12, C:0.07, G:0.26, T:0.54
Consensus pattern (20 bp):
TTTCGGTTTTGGGTTTCAAA
Found at i:774148 original size:28 final size:28
Alignment explanation
Indices: 774117--774276 Score: 76
Period size: 28 Copynumber: 6.2 Consensus size: 28
774107 TCAAATTTCA
774117 GGTTTTGGGTTTCAAATTTTGGGTTTTG
1 GGTTTTGGGTTTCAAATTTTGGGTTTTG
* * * * *
774145 GG-TTCGGGTTTTAAAATTTGGGTATCG
1 GGTTTTGGGTTTCAAATTTTGGGTTTTG
* * *** *
774172 AGTTTCGGGTTTC-AGGCTTCGG----G
1 GGTTTTGGGTTTCAAATTTTGGGTTTTG
**
774195 GGTTTTTTGTTTCAAATTTTGGGTTTTG
1 GGTTTTGGGTTTCAAATTTTGGGTTTTG
* *
774223 GG---T---TTT-AAACTTTAGGTTTTG
1 GGTTTTGGGTTTCAAATTTTGGGTTTTG
* *
774244 GGTTTTGAGTTTCAAATTTTAGGTTTTG
1 GGTTTTGGGTTTCAAATTTTGGGTTTTG
774272 GGTTT
1 GGTTT
774277 CAAATTTTAG
Statistics
Matches: 97, Mismatches: 22, Indels: 26
0.67 0.15 0.18
Matches are distributed among these distances:
21 15 0.15
22 3 0.03
23 10 0.10
24 6 0.06
25 1 0.01
27 29 0.30
28 33 0.34
ACGTcount: A:0.14, C:0.06, G:0.30, T:0.50
Consensus pattern (28 bp):
GGTTTTGGGTTTCAAATTTTGGGTTTTG
Found at i:774227 original size:21 final size:21
Alignment explanation
Indices: 774194--774367 Score: 87
Period size: 21 Copynumber: 8.0 Consensus size: 21
774184 CAGGCTTCGG
**
774194 GGGTTTTTTGTTTCAAATTTT
1 GGGTTTTGGGTTTCAAATTTT
*
774215 GGGTTTTGGGTTTTAAACTTTAGGTTTT
1 GGGTTTTGGGTTTCAAA---T----TTT
*
774243 GGGTTTTGAGTTTCAAATTTT
1 GGGTTTTGGGTTTCAAATTTT
*
774264 AGGTTTTGGGTTTCAAATTTT
1 GGGTTTTGGGTTTCAAATTTT
* * * ***
774285 AGGTTTCGGGTGTCGGGTTTT
1 GGGTTTTGGGTTTCAAATTTT
* ** * *
774306 GAGTTACGTGTTTCAAATTTC
1 GGGTTTTGGGTTTCAAATTTT
*** *
774327 AAATTTTGGGTTTCAAATTTC
1 GGGTTTTGGGTTTCAAATTTT
* *
774348 GGGTTTTAGGTTTTAAATTT
1 GGGTTTTGGGTTTCAAATTT
774368 CATGTTTCGG
Statistics
Matches: 115, Mismatches: 31, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
21 95 0.83
24 1 0.01
25 1 0.01
28 18 0.16
ACGTcount: A:0.18, C:0.06, G:0.25, T:0.51
Consensus pattern (21 bp):
GGGTTTTGGGTTTCAAATTTT
Found at i:774249 original size:49 final size:49
Alignment explanation
Indices: 774075--774295 Score: 160
Period size: 49 Copynumber: 4.5 Consensus size: 49
774065 TTTGAATTTC
** * * *
774075 GGGTTTCAAGTTTTACGTTTC-GGTTTTGTGTTTCAAATTTCAGGTTTT
1 GGGTTTCAAACTTTAGGTTTCGGGTTTTGAGTTTCAAATTTTAGGTTTT
* * * * * * * * * *
774123 GGGTTTCAAATTTTGGGTTTTGGG-TTCGGGTTTTAAAATTTGGGTATC
1 GGGTTTCAAACTTTAGGTTTCGGGTTTTGAGTTTCAAATTTTAGGTTTT
* *** * ** *
774171 GAGTTTC-GGGTTTCAGGCTTCGGGGGTTTTTTGTTTCAAATTTTGGGTTTT
1 GGGTTTCAAACTTT-AGGTTTC--GGGTTTTGAGTTTCAAATTTTAGGTTTT
* *
774222 GGGTTTTAAACTTTAGGTTTTGGGTTTTGAGTTTCAAATTTTAGGTTTT
1 GGGTTTCAAACTTTAGGTTTCGGGTTTTGAGTTTCAAATTTTAGGTTTT
*
774271 GGGTTTCAAATTTTAGGTTTCGGGT
1 GGGTTTCAAACTTTAGGTTTCGGGT
774296 GTCGGGTTTT
Statistics
Matches: 128, Mismatches: 39, Indels: 11
0.72 0.22 0.06
Matches are distributed among these distances:
47 3 0.02
48 43 0.34
49 49 0.38
50 3 0.02
51 27 0.21
52 3 0.02
ACGTcount: A:0.15, C:0.08, G:0.28, T:0.49
Consensus pattern (49 bp):
GGGTTTCAAACTTTAGGTTTCGGGTTTTGAGTTTCAAATTTTAGGTTTT
Found at i:774342 original size:14 final size:14
Alignment explanation
Indices: 774323--774353 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
774313 GTGTTTCAAA
*
774323 TTTCAAATTTTGGG
1 TTTCAAATTTCGGG
774337 TTTCAAATTTCGGG
1 TTTCAAATTTCGGG
774351 TTT
1 TTT
774354 TAGGTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.52
Consensus pattern (14 bp):
TTTCAAATTTCGGG
Found at i:774374 original size:21 final size:21
Alignment explanation
Indices: 774245--774391 Score: 78
Period size: 21 Copynumber: 7.0 Consensus size: 21
774235 TAGGTTTTGG
* * *
774245 GTTTTGAGTTTCAAATTTTAG
1 GTTTTGGGTTTCAAATTTCAA
* *
774266 GTTTTGGGTTTCAAATTTTAG
1 GTTTTGGGTTTCAAATTTCAA
* * *** **
774287 GTTTCGGGTGTCGGGTTTTGA
1 GTTTTGGGTTTCAAATTTCAA
** *
774308 GTTACGTGTTTCAAATTTCAA
1 GTTTTGGGTTTCAAATTTCAA
* **
774329 ATTTTGGGTTTCAAATTTCGG
1 GTTTTGGGTTTCAAATTTCAA
* * *
774350 GTTTTAGGTTTTAAATTTCAT
1 GTTTTGGGTTTCAAATTTCAA
* **
774371 GTTTCGGGTTTTGAATTTCAA
1 GTTTTGGGTTTCAAATTTCAA
774392 ATTTCGAGTT
Statistics
Matches: 95, Mismatches: 31, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 95 1.00
ACGTcount: A:0.20, C:0.08, G:0.23, T:0.49
Consensus pattern (21 bp):
GTTTTGGGTTTCAAATTTCAA
Found at i:774393 original size:28 final size:28
Alignment explanation
Indices: 774344--774423 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
774334 GGGTTTCAAA
*
774344 TTTCGGGTTTT-AGGTTTTAAATTTC-ATG
1 TTTCGGGTTTTGA-GTTTCAAATTTCGA-G
*
774372 TTTCGGGTTTTGAATTTCAAATTTCGAG
1 TTTCGGGTTTTGAGTTTCAAATTTCGAG
* *
774400 TTTCTGGTTTCGAGTTTCAAATTT
1 TTTCGGGTTTTGAGTTTCAAATTT
774424 TGGGTTTCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 43 0.96
29 2 0.04
ACGTcount: A:0.19, C:0.10, G:0.20, T:0.51
Consensus pattern (28 bp):
TTTCGGGTTTTGAGTTTCAAATTTCGAG
Found at i:774396 original size:21 final size:21
Alignment explanation
Indices: 774315--774402 Score: 68
Period size: 21 Copynumber: 4.2 Consensus size: 21
774305 TGAGTTACGT
* *
774315 GTTTCAAATTTCAAATTTTGG
1 GTTTTAAATTTCAAATTTCGG
* *** **
774336 GTTTCAAATTTCGGGTTTTAG
1 GTTTTAAATTTCAAATTTCGG
**
774357 GTTTTAAATTTCATGTTTCGG
1 GTTTTAAATTTCAAATTTCGG
* *
774378 GTTTTGAATTTCAAATTTCGA
1 GTTTTAAATTTCAAATTTCGG
774399 GTTT
1 GTTT
774403 CTGGTTTCGA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.23, C:0.09, G:0.18, T:0.50
Consensus pattern (21 bp):
GTTTTAAATTTCAAATTTCGG
Found at i:774403 original size:14 final size:14
Alignment explanation
Indices: 774386--774438 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
774376 GGGTTTTGAA
774386 TTTCAAATTTCGAG
1 TTTCAAATTTCGAG
***
774400 TTTCTGGTTTCGAG
1 TTTCAAATTTCGAG
* *
774414 TTTCAAATTTTGGG
1 TTTCAAATTTCGAG
774428 TTTCAAATTTC
1 TTTCAAATTTC
774439 TGGTTTCTAG
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.49
Consensus pattern (14 bp):
TTTCAAATTTCGAG
Found at i:774439 original size:35 final size:35
Alignment explanation
Indices: 774400--774480 Score: 99
Period size: 35 Copynumber: 2.3 Consensus size: 35
774390 AAATTTCGAG
* *
774400 TTTCTGGTTTCGAGTTTCAAATTTTGGGTTTCAAA
1 TTTCTGGTTTCGAGTTTCAAATTTCGGGTTTAAAA
* ***
774435 TTTCTGGTTTCTAGTTTCTTGTTTCGGGTTTAAAA
1 TTTCTGGTTTCGAGTTTCAAATTTCGGGTTTAAAA
*
774470 TTTCGGGTTTC
1 TTTCTGGTTTC
774481 AGGTTTTAGG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.15, C:0.12, G:0.21, T:0.52
Consensus pattern (35 bp):
TTTCTGGTTTCGAGTTTCAAATTTCGGGTTTAAAA
Found at i:774443 original size:14 final size:14
Alignment explanation
Indices: 774413--774459 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
774403 CTGGTTTCGA
774413 GTTTCAAATTT-TGG
1 GTTTCAAATTTCT-G
774427 GTTTCAAATTTCTG
1 GTTTCAAATTTCTG
* * *
774441 GTTTCTAGTTTCTT
1 GTTTCAAATTTCTG
774455 GTTTC
1 GTTTC
774460 GGGTTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 28 0.97
15 1 0.03
ACGTcount: A:0.15, C:0.13, G:0.17, T:0.55
Consensus pattern (14 bp):
GTTTCAAATTTCTG
Found at i:774537 original size:35 final size:35
Alignment explanation
Indices: 774467--774537 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
774457 TTCGGGTTTA
* ** *
774467 AAATTTCGGGTTTCAGGTTTTAGGTTTGGACTTTC
1 AAATTTCGGGTTTCACGTTTTAGGTTTCAAATTTC
*
774502 AAATTTTGGGTTTCACGTTTTAGGTTTCAAATTTC
1 AAATTTCGGGTTTCACGTTTTAGGTTTCAAATTTC
774537 A
1 A
774538 GTTTTCTGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.46
Consensus pattern (35 bp):
AAATTTCGGGTTTCACGTTTTAGGTTTCAAATTTC
Found at i:774549 original size:35 final size:36
Alignment explanation
Indices: 774470--774550 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 36
774460 GGGTTTAAAA
* ** *
774470 TTTCGGGTTTCAGGTTTTAGGTTTGGACTTTCAAAT
1 TTTCGGGTTTCACGTTTTAGGTTTCAAATTTCAAAT
*
774506 TTT-GGGTTTCACGTTTTAGGTTTCAAATTTC-AGT
1 TTTCGGGTTTCACGTTTTAGGTTTCAAATTTCAAAT
*
774540 TTTCTGGTTTC
1 TTTCGGGTTTC
774551 GAAATTTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
34 5 0.13
35 30 0.79
36 3 0.08
ACGTcount: A:0.15, C:0.12, G:0.22, T:0.51
Consensus pattern (36 bp):
TTTCGGGTTTCACGTTTTAGGTTTCAAATTTCAAAT
Found at i:774564 original size:22 final size:21
Alignment explanation
Indices: 774524--774564 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
774514 TCACGTTTTA
* *
774524 GGTTTCAAATTTCAGTTTTCT
1 GGTTTCAAATTTAAATTTTCT
774545 GGTTTCGAAATTTAAATTTT
1 GGTTTC-AAATTTAAATTTT
774565 GGATTTTGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.24, C:0.10, G:0.15, T:0.51
Consensus pattern (21 bp):
GGTTTCAAATTTAAATTTTCT
Found at i:774585 original size:14 final size:14
Alignment explanation
Indices: 774568--774614 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
774558 AAATTTTGGA
*
774568 TTTTGGGTTTTGAG
1 TTTTGGGTTTCGAG
774582 TTTT-GGTTTCGAG
1 TTTTGGGTTTCGAG
774595 TTTTGGGTTTC-AGG
1 TTTTGGGTTTCGA-G
774609 TTTTGG
1 TTTTGG
774615 ACTTCAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 13 0.43
14 17 0.57
ACGTcount: A:0.06, C:0.04, G:0.34, T:0.55
Consensus pattern (14 bp):
TTTTGGGTTTCGAG
Found at i:774646 original size:42 final size:42
Alignment explanation
Indices: 774594--774682 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 42
774584 TTGGTTTCGA
* *
774594 GTTTTGGGTTTCA-GGTTTT-GGACTTCAAATTTTGGGTTTTAG
1 GTTTAGGGTTT-AGGGTTTTAGG-CTTCAAATTTTAGGTTTTAG
* * *
774636 GTTTAGGGTTTAGGGTTTTAGGTTTCAAATTTTAGTTTTTGG
1 GTTTAGGGTTTAGGGTTTTAGGCTTCAAATTTTAGGTTTTAG
774678 GTTTA
1 GTTTA
774683 AAATTTTGGG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.03
42 37 0.93
43 2 0.05
ACGTcount: A:0.16, C:0.04, G:0.28, T:0.52
Consensus pattern (42 bp):
GTTTAGGGTTTAGGGTTTTAGGCTTCAAATTTTAGGTTTTAG
Found at i:774675 original size:21 final size:21
Alignment explanation
Indices: 774651--774737 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 21
774641 GGGTTTAGGG
*
774651 TTTTAGGTTTCAAATTTTAGT
1 TTTTAGGTTTCAAATTTTAGA
* * * *
774672 TTTTGGGTTTAAAATTTTGGG
1 TTTTAGGTTTCAAATTTTAGA
* * *
774693 TTATGGGTTTCAAGTTTTAGA
1 TTTTAGGTTTCAAATTTTAGA
* * * *
774714 TTTCAGATTTCAGATTTCAGA
1 TTTTAGGTTTCAAATTTTAGA
774735 TTT
1 TTT
774738 CAAATTTTGA
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.23, C:0.06, G:0.20, T:0.52
Consensus pattern (21 bp):
TTTTAGGTTTCAAATTTTAGA
Found at i:774721 original size:7 final size:7
Alignment explanation
Indices: 774711--774744 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
774701 TTCAAGTTTT
774711 AGATTTC
1 AGATTTC
774718 AGATTTC
1 AGATTTC
774725 AGATTTC
1 AGATTTC
774732 AGATTTC
1 AGATTTC
*
774739 AAATTT
1 AGATTT
774745 TGAATTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (7 bp):
AGATTTC
Found at i:774778 original size:21 final size:21
Alignment explanation
Indices: 774700--774793 Score: 64
Period size: 21 Copynumber: 4.5 Consensus size: 21
774690 GGGTTATGGG
* * *
774700 TTTCAAGTTTTAGATTTCAGA
1 TTTCAGGTTTCAGATTTCAAA
*
774721 TTTCAGATTTCAGATTTCAAA
1 TTTCAGGTTTCAGATTTCAAA
* * ** *
774742 TTT-TGAATTTTGGGTTTCAAA
1 TTTCAG-GTTTCAGATTTCAAA
* **
774763 TTTCAGGTTTCAGGTTTTGAA
1 TTTCAGGTTTCAGATTTCAAA
774784 TTTCAGGTTT
1 TTTCAGGTTT
774794 GGGATTTCGT
Statistics
Matches: 57, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
20 1 0.02
21 55 0.96
22 1 0.02
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (21 bp):
TTTCAGGTTTCAGATTTCAAA
Found at i:774842 original size:14 final size:14
Alignment explanation
Indices: 774825--774934 Score: 76
Period size: 14 Copynumber: 7.9 Consensus size: 14
774815 TAGGTTTTGA
774825 GTTTTGGGTTTCAG
1 GTTTTGGGTTTCAG
* *
774839 GTTTTGGTTTTCAA
1 GTTTTGGGTTTCAG
* *
774853 ATTTCGGGTTTCAG
1 GTTTTGGGTTTCAG
*** *
774867 GTTTCAAGTTTCAA
1 GTTTTGGGTTTCAG
* *
774881 ATTTTAGGTTTCAG
1 GTTTTGGGTTTCAG
* *
774895 GTTTCGGGTTTCAA
1 GTTTTGGGTTTCAG
* * *
774909 ATTTTAGGTTTTAG
1 GTTTTGGGTTTCAG
*
774923 GTTTTTGGTTTC
1 GTTTTGGGTTTC
774935 GAGTTTCAAG
Statistics
Matches: 70, Mismatches: 26, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
14 70 1.00
ACGTcount: A:0.15, C:0.09, G:0.25, T:0.51
Consensus pattern (14 bp):
GTTTTGGGTTTCAG
Found at i:774843 original size:28 final size:28
Alignment explanation
Indices: 774831--775217 Score: 160
Period size: 28 Copynumber: 13.3 Consensus size: 28
774821 TTGAGTTTTG
* *
774831 GGTTTCAGGTTT-TGGTTTTCAAATTTCG
1 GGTTTCAGGTTTCAGG-TTTCAAATTTCA
* *
774859 GGTTTCAGGTTTCAAGTTTCAAATTTTA
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
* *
774887 GGTTTCAGGTTTCGGGTTTCAAATTTTA
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
* ** * *
774915 GGTTTTAGGTTTTTGGTTTCGAGTTTCA
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
* * ** * *
774943 AGTTTC-GAGTTTCGGGTTTTGAGTTTCG
1 GGTTTCAG-GTTTCAGGTTTCAAATTTCA
* *
774971 GGTTTCAAATTTCGGGTTTC-GAATTTCAAATTTTA
1 GGTTTC--A-----GGTTTCAG-GTTTCAAATTTCA
* **
775006 GGTTTCAGGTTTCGGGTTT-GGATATTCA
1 GGTTTCAGGTTTCAGGTTTCAAAT-TTCA
** *
775034 GGTTTTGGGTTTCTGGTTTCAAATTTTTGGTTTCA
1 GGTTTCAGGTTTCAGGTTTCAAA-------TTTCA
* * *
775069 GGTTTCAGGATTCGGGTTTCAAATTTCG
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
775097 GGTTTC-GAGTTTCAGGTTTCAAATTTC-
1 GGTTTCAG-GTTTCAGGTTTCAAATTTCA
* * * **
775124 GAGTTTCTGGTTTTAGGTTTTAAATTTTGGG
1 G-GTTTCAGGTTTCAGGTTTCAAA-TTT-CA
* *
775155 GGTTT-AGGATTT-AGGTTCCAAATTTTA
1 GGTTTCAGG-TTTCAGGTTTCAAATTTCA
* * * *
775182 GGTTTCGGGTTTCATGTTTAAAATTTCG
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
775210 GGTTTCAG
1 GGTTTCAG
775218 TTTTTGGTGA
Statistics
Matches: 273, Mismatches: 56, Indels: 60
0.70 0.14 0.15
Matches are distributed among these distances:
27 13 0.05
28 190 0.70
29 17 0.06
30 7 0.03
31 1 0.00
33 1 0.00
34 1 0.00
35 41 0.15
36 2 0.01
ACGTcount: A:0.17, C:0.10, G:0.26, T:0.47
Consensus pattern (28 bp):
GGTTTCAGGTTTCAGGTTTCAAATTTCA
Found at i:774857 original size:21 final size:22
Alignment explanation
Indices: 774805--774863 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 22
774795 GGATTTCGTG
*
774805 TTTCAAATTTTAGGTTTTGAGT
1 TTTCAAATTTCAGGTTTTGAGT
***
774827 TTT-GGGTTTCAGGTTTTG-GT
1 TTTCAAATTTCAGGTTTTGAGT
*
774847 TTTCAAATTTCGGGTTT
1 TTTCAAATTTCAGGTTT
774864 CAGGTTTCAA
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
20 5 0.18
21 20 0.71
22 3 0.11
ACGTcount: A:0.15, C:0.07, G:0.24, T:0.54
Consensus pattern (22 bp):
TTTCAAATTTCAGGTTTTGAGT
Found at i:774864 original size:7 final size:7
Alignment explanation
Indices: 774854--775117 Score: 92
Period size: 7 Copynumber: 37.7 Consensus size: 7
774844 GGTTTTCAAA
*
774854 TTTCGGG
1 TTTCAGG
774861 TTTCAGG
1 TTTCAGG
*
774868 TTTCAAG
1 TTTCAGG
**
774875 TTTCAAA
1 TTTCAGG
*
774882 TTTTAGG
1 TTTCAGG
774889 TTTCAGG
1 TTTCAGG
*
774896 TTTCGGG
1 TTTCAGG
**
774903 TTTCAAA
1 TTTCAGG
*
774910 TTTTAGG
1 TTTCAGG
*
774917 TTTTAGG
1 TTTCAGG
**
774924 TTTTTGG
1 TTTCAGG
774931 TTTC-GAG
1 TTTCAG-G
*
774938 TTTCAAG
1 TTTCAGG
774945 TTTC-GAG
1 TTTCAG-G
*
774952 TTTCGGG
1 TTTCAGG
*
774959 TTT-TGAG
1 TTTCAG-G
*
774966 TTTCGGG
1 TTTCAGG
**
774973 TTTCAAA
1 TTTCAGG
*
774980 TTTCGGG
1 TTTCAGG
*
774987 TTTC-GAA
1 TTTCAG-G
**
774994 TTTCAAA
1 TTTCAGG
*
775001 TTTTAGG
1 TTTCAGG
775008 TTTCAGG
1 TTTCAGG
*
775015 TTTCGGG
1 TTTCAGG
775022 TTT--GG
1 TTTCAGG
775027 ATATTCAGG
1 -T-TTCAGG
**
775036 TTTTGGG
1 TTTCAGG
*
775043 TTTCTGG
1 TTTCAGG
**
775050 TTTCAAA
1 TTTCAGG
**
775057 TTTTTGG
1 TTTCAGG
775064 TTTCAGG
1 TTTCAGG
775071 TTTCAGG
1 TTTCAGG
* *
775078 ATTCGGG
1 TTTCAGG
**
775085 TTTCAAA
1 TTTCAGG
*
775092 TTTCGGG
1 TTTCAGG
775099 TTTC-GAG
1 TTTCAG-G
775106 TTTCAGG
1 TTTCAGG
775113 TTTCA
1 TTTCA
775118 AATTTCGAGT
Statistics
Matches: 188, Mismatches: 55, Indels: 28
0.69 0.20 0.10
Matches are distributed among these distances:
5 2 0.01
6 5 0.03
7 175 0.93
8 4 0.02
9 2 0.01
ACGTcount: A:0.16, C:0.11, G:0.26, T:0.47
Consensus pattern (7 bp):
TTTCAGG
Found at i:774898 original size:35 final size:35
Alignment explanation
Indices: 774854--775143 Score: 117
Period size: 35 Copynumber: 8.3 Consensus size: 35
774844 GGTTTTCAAA
* *
774854 TTTCGGGTTTCAGGTTTCAAGTTTCAAATTTTAGG
1 TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
* * * *
774889 TTTCAGGTTTCGGGTTTCAAATTTTAGGTTTTAGG
1 TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
** * **
774924 TTTTTGGTTTC-GAGTTTCAAGTTTCGAGTTTCGGG
1 TTTCAGGTTTCAG-GTTTCAAGTTTCAAGTTTTAGG
* * * * * * *
774959 TTT-TGAGTTTCGGGTTTCAAATTTC-GGGTTTCGAA
1 TTTCAG-GTTTCAGGTTTCAAGTTTCAAGTTTTAG-G
** * * * *
774994 TTTCAAATTTTAGGTTTCAGGTTTC-GGGTTT-GG
1 TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
** ** * *
775027 ATATTCAGGTTTTGGGTTTCTGGTTTCAAATTTTTGG
1 -T-TTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
* ** * **
775064 TTTCAGGTTTCAGGATTCGGGTTTCAAATTTCGGG
1 TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
* *
775099 TTTC-GAGTTTCAGGTTTCAAATTTCGAGTTTCT-GG
1 TTTCAG-GTTTCAGGTTTCAAGTTTCAAGTTT-TAGG
*
775134 TTTTAGGTTT
1 TTTCAGGTTT
775144 TAAATTTTGG
Statistics
Matches: 194, Mismatches: 49, Indels: 24
0.73 0.18 0.09
Matches are distributed among these distances:
34 10 0.05
35 176 0.91
36 6 0.03
37 2 0.01
ACGTcount: A:0.16, C:0.11, G:0.26, T:0.48
Consensus pattern (35 bp):
TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
Found at i:775023 original size:14 final size:14
Alignment explanation
Indices: 774951--775136 Score: 65
Period size: 14 Copynumber: 13.3 Consensus size: 14
774941 CAAGTTTCGA
*
774951 GTTTCGGGTTT-TG
1 GTTTCGGGTTTCAG
*
774964 AGTTTCGGGTTTCAA
1 -GTTTCGGGTTTCAG
*
774979 ATTTCGGGTTTC-G
1 GTTTCGGGTTTCAG
* *** *
774992 AATTTCAAATTTTAG
1 -GTTTCGGGTTTCAG
* *
775007 GTTTCAGGTTTCGG
1 GTTTCGGGTTTCAG
*
775021 GTTT-GGATATTCAG
1 GTTTCGGGT-TTCAG
* *
775035 GTTTTGGGTTTCTG
1 GTTTCGGGTTTCAG
*** **
775049 GTTTCAAATTTTTG
1 GTTTCGGGTTTCAG
*
775063 GTTTCAGGTTTCAG
1 GTTTCGGGTTTCAG
* *
775077 GATTCGGGTTTCAA
1 GTTTCGGGTTTCAG
*
775091 ATTTCGGGTTTC-G
1 GTTTCGGGTTTCAG
* *
775104 AGTTTCAGGTTTCAA
1 -GTTTCGGGTTTCAG
* * *
775119 ATTTCGAGTTTCTG
1 GTTTCGGGTTTCAG
775133 GTTT
1 GTTT
775137 TAGGTTTTAA
Statistics
Matches: 123, Mismatches: 42, Indels: 14
0.69 0.23 0.08
Matches are distributed among these distances:
13 2 0.02
14 117 0.95
15 4 0.03
ACGTcount: A:0.16, C:0.11, G:0.26, T:0.47
Consensus pattern (14 bp):
GTTTCGGGTTTCAG
Found at i:775246 original size:14 final size:14
Alignment explanation
Indices: 775229--775389 Score: 97
Period size: 14 Copynumber: 11.0 Consensus size: 14
775219 TTTTGGTGAC
*
775229 GGGTTTTAGGTTTT
1 GGGTTTTAAGTTTT
*
775243 GGGTTTCAAGTTTT
1 GGGTTTTAAGTTTT
775257 GGGTTTTAAGTTTT
1 GGGTTTTAAGTTTT
* *
775271 GGGTTTCAAATTTAT
1 GGGTTTTAAGTTT-T
*
775286 GGTTTTTAGTTTCGAGTTTT
1 GGGTTTTA------AGTTTT
* *
775306 GGGTTTCAAATTTT
1 GGGTTTTAAGTTTT
* * *
775320 TGGTTTTAGGTTTG
1 GGGTTTTAAGTTTT
775334 GGGTTTTAAGTTTT
1 GGGTTTTAAGTTTT
*** *
775348 AAATTTTAGGTTTT
1 GGGTTTTAAGTTTT
* * *
775362 AGGTTTTAGGTTTC
1 GGGTTTTAAGTTTT
*
775376 GGGTTTCAAGTTTT
1 GGGTTTTAAGTTTT
775390 AATTTTCGGG
Statistics
Matches: 110, Mismatches: 30, Indels: 14
0.71 0.19 0.09
Matches are distributed among these distances:
14 92 0.84
15 7 0.06
20 7 0.06
21 4 0.04
ACGTcount: A:0.16, C:0.04, G:0.27, T:0.54
Consensus pattern (14 bp):
GGGTTTTAAGTTTT
Found at i:775270 original size:35 final size:34
Alignment explanation
Indices: 775231--775389 Score: 116
Period size: 35 Copynumber: 4.8 Consensus size: 34
775221 TTGGTGACGG
*
775231 GTTTTAGGTTTTGGGTTTCAAGTTTTGG------
1 GTTTTAGGTTTTGGGTTTCAAATTTTGGTTTTAA
* *
775259 GTTTTAAGTTTTGGGTTTCAAATTTATGGTTTTTA
1 GTTTTAGGTTTTGGGTTTCAAATTT-TGGTTTTAA
* *
775294 G-TTTCGAGTTTTGGGTTTCAAATTTTTGGTTTTAG
1 GTTTTAG-GTTTTGGGTTTCAAA-TTTTGGTTTTAA
** ** * *
775329 GTTTGGGGTTTTAAGTTTTAAATTTTAGGTTTTAG
1 GTTTTAGGTTTTGGGTTTCAAATTTT-GGTTTTAA
* *
775364 GTTTTAGGTTTCGGGTTTCAAGTTTT
1 GTTTTAGGTTTTGGGTTTCAAATTTT
775390 AATTTTCGGG
Statistics
Matches: 102, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
28 23 0.23
29 3 0.03
34 7 0.07
35 63 0.62
36 6 0.06
ACGTcount: A:0.16, C:0.04, G:0.26, T:0.55
Consensus pattern (34 bp):
GTTTTAGGTTTTGGGTTTCAAATTTTGGTTTTAA
Found at i:775326 original size:7 final size:7
Alignment explanation
Indices: 775316--775374 Score: 64
Period size: 7 Copynumber: 8.4 Consensus size: 7
775306 GGGTTTCAAA
*
775316 TTTTTGG
1 TTTTAGG
775323 TTTTAGG
1 TTTTAGG
**
775330 TTTGGGG
1 TTTTAGG
*
775337 TTTTAAG
1 TTTTAGG
**
775344 TTTTAAA
1 TTTTAGG
775351 TTTTAGG
1 TTTTAGG
775358 TTTTAGG
1 TTTTAGG
775365 TTTTAGG
1 TTTTAGG
775372 TTT
1 TTT
775375 CGGGTTTCAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.15, C:0.00, G:0.25, T:0.59
Consensus pattern (7 bp):
TTTTAGG
Found at i:775340 original size:21 final size:21
Alignment explanation
Indices: 775316--775402 Score: 75
Period size: 21 Copynumber: 4.1 Consensus size: 21
775306 GGGTTTCAAA
* *
775316 TTTTTGGTTTTAGGTTTGGGG
1 TTTTAGGTTTTAGGTTTCGGG
* ** **
775337 TTTTAAGTTTTAAATTTTAGG
1 TTTTAGGTTTTAGGTTTCGGG
775358 TTTTAGGTTTTAGGTTTCGGG
1 TTTTAGGTTTTAGGTTTCGGG
* * **
775379 TTTCAAGTTTTAATTTTCGGG
1 TTTTAGGTTTTAGGTTTCGGG
775400 TTT
1 TTT
775403 AAAATTTTGA
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.15, C:0.03, G:0.25, T:0.56
Consensus pattern (21 bp):
TTTTAGGTTTTAGGTTTCGGG
Found at i:775390 original size:35 final size:35
Alignment explanation
Indices: 775252--775390 Score: 131
Period size: 35 Copynumber: 4.0 Consensus size: 35
775242 TGGGTTTCAA
* *
775252 GTTTTGGGTTTTAAGTTTTGGGTTTCAAA-TTTATG
1 GTTTTAGGTTTTAGGTTTTGGGTTTCAAATTTTA-G
* *
775287 GTTTTTA-G-TTTCGAGTTTTGGGTTTCAAATTTTTG
1 G-TTTTAGGTTTTAG-GTTTTGGGTTTCAAATTTTAG
** ** *
775322 GTTTTAGGTTTGGGGTTTTAAGTTTTAAATTTTAG
1 GTTTTAGGTTTTAGGTTTTGGGTTTCAAATTTTAG
* *
775357 GTTTTAGGTTTTAGGTTTCGGGTTTCAAGTTTTA
1 GTTTTAGGTTTTAGGTTTTGGGTTTCAAATTTTA
775391 ATTTTCGGGT
Statistics
Matches: 82, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
34 8 0.10
35 64 0.78
36 10 0.12
ACGTcount: A:0.17, C:0.04, G:0.25, T:0.55
Consensus pattern (35 bp):
GTTTTAGGTTTTAGGTTTTGGGTTTCAAATTTTAG
Found at i:775502 original size:28 final size:28
Alignment explanation
Indices: 775471--775543 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
775461 GACTTTTAAT
*
775471 TTTTGGGTTTTTGGTTTAAGGTTTCAAA
1 TTTTGGGTTTTTGGTTTAAGGATTCAAA
* **
775499 TTTT-AGTTTTCTGGTTTCGGGATTCAAA
1 TTTTGGGTTTT-TGGTTTAAGGATTCAAA
* *
775527 TTTTGGATTTTGGGTTT
1 TTTTGGGTTTTTGGTTT
775544 TGAGTTTTGG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
27 5 0.14
28 27 0.75
29 4 0.11
ACGTcount: A:0.15, C:0.05, G:0.25, T:0.55
Consensus pattern (28 bp):
TTTTGGGTTTTTGGTTTAAGGATTCAAA
Found at i:775551 original size:21 final size:20
Alignment explanation
Indices: 775527--775595 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
775517 GGGATTCAAA
*
775527 TTTTGGATTTTGGGTTTTGAG
1 TTTTGGATTTAGGGTTTT-AG
* * *
775548 TTTTGG-TTTCGGGTTTCAAA
1 TTTTGGATTTAGGGTTT-TAG
*
775568 TTTTGGGTTTAGGGTTTTAGG
1 TTTTGGATTTAGGGTTTTA-G
775589 TTTTGGA
1 TTTTGGA
775596 CTTCAAATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
20 17 0.45
21 21 0.55
ACGTcount: A:0.12, C:0.03, G:0.32, T:0.54
Consensus pattern (20 bp):
TTTTGGATTTAGGGTTTTAG
Found at i:775601 original size:35 final size:34
Alignment explanation
Indices: 775533--775629 Score: 115
Period size: 35 Copynumber: 2.8 Consensus size: 34
775523 CAAATTTTGG
* * * **
775533 ATTTTGGGTTTTGAGTTTTGGTTTCGGGTTTCAA
1 ATTTTGGGTTTAGGGTTTTGGTTTTGGACTTCAA
775567 ATTTTGGGTTTAGGGTTTTAGGTTTTGGACTTCAA
1 ATTTTGGGTTTAGGGTTTT-GGTTTTGGACTTCAA
775602 ATTTTGGGTTTCA-GGTTTTGGGTTTTGG
1 ATTTTGGGTTT-AGGGTTTT-GGTTTTGG
775630 GTTTTAGGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
34 17 0.31
35 37 0.67
36 1 0.02
ACGTcount: A:0.12, C:0.05, G:0.31, T:0.52
Consensus pattern (34 bp):
ATTTTGGGTTTAGGGTTTTGGTTTTGGACTTCAA
Found at i:775632 original size:14 final size:14
Alignment explanation
Indices: 775527--775640 Score: 59
Period size: 14 Copynumber: 8.2 Consensus size: 14
775517 GGGATTCAAA
*
775527 TTTTGGATTTTGGG
1 TTTTGGGTTTTGGG
*
775541 TTTTGAGTTTT-GG
1 TTTTGGGTTTTGGG
* ****
775554 TTTCGGGTTTCAAA
1 TTTTGGGTTTTGGG
*
775568 TTTTGGGTTTAGGG
1 TTTTGGGTTTTGGG
* *
775582 TTTTAGGTTTTGGA
1 TTTTGGGTTTTGGG
* ****
775596 CTTCAAATTTTGGG
1 TTTTGGGTTTTGGG
**
775610 TTTCAGGTTTTGGG
1 TTTTGGGTTTTGGG
*
775624 TTTTGGGTTTTAGG
1 TTTTGGGTTTTGGG
775638 TTT
1 TTT
775641 CAAATTTTAG
Statistics
Matches: 73, Mismatches: 26, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
13 10 0.14
14 63 0.86
ACGTcount: A:0.11, C:0.04, G:0.31, T:0.54
Consensus pattern (14 bp):
TTTTGGGTTTTGGG
Found at i:775639 original size:28 final size:28
Alignment explanation
Indices: 775610--775698 Score: 97
Period size: 28 Copynumber: 3.2 Consensus size: 28
775600 AAATTTTGGG
*
775610 TTTCAGGTTTTGGGTTTTGGGTTTTAGG
1 TTTCAGGTTTTGGGTTTTGGGTTTTAGA
** * * *
775638 TTTCAAATTTTAGTTTTTGGGTTTTAAA
1 TTTCAGGTTTTGGGTTTTGGGTTTTAGA
* * *
775666 TTTCGGGTTATGGGTTTTGTGTTTTAGA
1 TTTCAGGTTTTGGGTTTTGGGTTTTAGA
775694 TTTCA
1 TTTCA
775699 AATTTCAAGT
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.15, C:0.04, G:0.26, T:0.55
Consensus pattern (28 bp):
TTTCAGGTTTTGGGTTTTGGGTTTTAGA
Found at i:775648 original size:21 final size:21
Alignment explanation
Indices: 775597--775674 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 21
775587 GGTTTTGGAC
*
775597 TTCAAATTTTGGGTTTCAGGT
1 TTCAAATTTTGGGTTTTAGGT
****
775618 TTTGGGTTTTGGGTTTTAGGT
1 TTCAAATTTTGGGTTTTAGGT
* * *
775639 TTCAAATTTTAGTTTTTGGGT
1 TTCAAATTTTGGGTTTTAGGT
* *
775660 TTTAAATTTCGGGTT
1 TTCAAATTTTGGGTT
775675 ATGGGTTTTG
Statistics
Matches: 41, Mismatches: 16, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.15, C:0.05, G:0.26, T:0.54
Consensus pattern (21 bp):
TTCAAATTTTGGGTTTTAGGT
Found at i:775674 original size:49 final size:49
Alignment explanation
Indices: 775558--775732 Score: 143
Period size: 49 Copynumber: 3.4 Consensus size: 49
775548 TTTTGGTTTC
* ***
775558 GGGTTTCAAATTTTGGGTTTAGGGTTTTAGGTTTTGGACTTCAAATTTT
1 GGGTTTCAAATTTTGGGTTTTGGGTTTTAGGTTTCAAACTTCAAATTTT
** * * **
775607 GGGTTTCAGGTTTTGGGTTTTGGGTTTTAGGTTTCAAATTTTAGTTTTT
1 GGGTTTCAAATTTTGGGTTTTGGGTTTTAGGTTTCAAACTTCAAATTTT
* * * * *
775656 GGGTTTTAAATTTCGGGTTATGGGTTTTGTGTTTTAGATTTCAAATTTCAAGTTTT
1 GGGTTTCAAA--T----TT-TGGGTTTTGGGTTTTAGGTTTCAAACTTCAAATTTT
*
775712 GGGTTTCAAATGTTGGGTTTT
1 GGGTTTCAAATTTTGGGTTTT
775733 AAAATTTTAG
Statistics
Matches: 99, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
49 54 0.55
50 1 0.01
51 1 0.01
54 1 0.01
55 2 0.02
56 40 0.40
ACGTcount: A:0.17, C:0.05, G:0.27, T:0.51
Consensus pattern (49 bp):
GGGTTTCAAATTTTGGGTTTTGGGTTTTAGGTTTCAAACTTCAAATTTT
Found at i:775680 original size:56 final size:56
Alignment explanation
Indices: 775610--775730 Score: 156
Period size: 56 Copynumber: 2.2 Consensus size: 56
775600 AAATTTTGGG
* * * * *
775610 TTTCAGGTTTTGGGTTTTGGGTTTTAGGTTTCAAATTT-TAGTTTTTGGGTTTTAAA
1 TTTCGGGTTATGGGTTTTGGGTTTTAGATTTCAAATTTCAAG-TTTTGGGTTTCAAA
*
775666 TTTCGGGTTATGGGTTTTGTGTTTTAGATTTCAAATTTCAAGTTTTGGGTTTCAAA
1 TTTCGGGTTATGGGTTTTGGGTTTTAGATTTCAAATTTCAAGTTTTGGGTTTCAAA
775722 TGTT-GGGTT
1 T-TTCGGGTT
775731 TTAAAATTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
56 53 0.93
57 4 0.07
ACGTcount: A:0.17, C:0.05, G:0.26, T:0.53
Consensus pattern (56 bp):
TTTCGGGTTATGGGTTTTGGGTTTTAGATTTCAAATTTCAAGTTTTGGGTTTCAAA
Found at i:775747 original size:36 final size:36
Alignment explanation
Indices: 775698--775767 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
775688 TTTAGATTTC
*
775698 AAATTTCAAGTTTTGGGTTTCAAATGTTGGGTTTTA
1 AAATTTCAAGTTTTGAGTTTCAAATGTTGGGTTTTA
* * ** *
775734 AAATTTTAGGTTTTGAGTTTTGAATTTTGGGTTT
1 AAATTTCAAGTTTTGAGTTTCAAATGTTGGGTTT
775768 GGGGTTTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.51
Consensus pattern (36 bp):
AAATTTCAAGTTTTGAGTTTCAAATGTTGGGTTTTA
Found at i:775774 original size:21 final size:22
Alignment explanation
Indices: 775726--775774 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
775716 TTCAAATGTT
*
775726 GGGTTTTAAAATTTTAGGTTTT
1 GGGTTTTAAAATTTTAGGTTTG
* * *
775748 GAGTTTT-GAATTTTGGGTTTG
1 GGGTTTTAAAATTTTAGGTTTG
775769 GGGTTT
1 GGGTTT
775775 AATGTTTCAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (22 bp):
GGGTTTTAAAATTTTAGGTTTG
Found at i:775814 original size:21 final size:20
Alignment explanation
Indices: 775790--775851 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 20
775780 TTCAAATTTT
775790 AGGTTATGGGTTTTGGGTTTC
1 AGGTT-TGGGTTTTGGGTTTC
* * *
775811 AGGTTTCGTGTTTCGGTTTTC
1 AGGTTT-GGGTTTTGGGTTTC
**
775832 AAATTTTGGGTTTTGGGTTT
1 -AGGTTTGGGTTTTGGGTTT
775852 TAAGTTTCAA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
20 1 0.03
21 26 0.84
22 4 0.13
ACGTcount: A:0.10, C:0.06, G:0.32, T:0.52
Consensus pattern (20 bp):
AGGTTTGGGTTTTGGGTTTC
Found at i:775816 original size:49 final size:49
Alignment explanation
Indices: 775727--775872 Score: 134
Period size: 49 Copynumber: 3.0 Consensus size: 49
775717 TCAAATGTTG
* * ** *
775727 GGTTTTAAAATTTTAGGTTTTGAGTTTTGAATTTTGGGTTTGGGGTTTA
1 GGTTTTCAAATTTTAGGTTTTGGGTTTTGAATTTCAGGTTTCGGGTTTA
* * ** * *
775776 -ATGTTTCAAATTTTAGGTTATGGGTTTTGGGTTTCAGGTTTCGTGTTTC
1 GGT-TTTCAAATTTTAGGTTTTGGGTTTTGAATTTCAGGTTTCGGGTTTA
* **
775825 GGTTTTCAAATTTTGGGTTTTGGGTTTT-AAGTTTCAAATTTCGGGTTT
1 GGTTTTCAAATTTTAGGTTTTGGGTTTTGAA-TTTCAGGTTTCGGGTTT
775873 TAAATTTCAG
Statistics
Matches: 75, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
48 1 0.01
49 73 0.97
50 1 0.01
ACGTcount: A:0.16, C:0.05, G:0.27, T:0.52
Consensus pattern (49 bp):
GGTTTTCAAATTTTAGGTTTTGGGTTTTGAATTTCAGGTTTCGGGTTTA
Found at i:775867 original size:42 final size:42
Alignment explanation
Indices: 775796--775879 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
775786 TTTTAGGTTA
* ***
775796 TGGGTTTTGGGTTTCAGGTTTCGTGTTTC-GGTTTTCAAATTT
1 TGGGTTTTGGGTTTCAAGTTTCAAATTTCGGGTTTT-AAATTT
*
775838 TGGGTTTTGGGTTTTAAGTTTCAAATTTCGGGTTTTAAATTT
1 TGGGTTTTGGGTTTCAAGTTTCAAATTTCGGGTTTTAAATTT
775880 CAGGTTTCAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 30 0.83
43 6 0.17
ACGTcount: A:0.14, C:0.07, G:0.26, T:0.52
Consensus pattern (42 bp):
TGGGTTTTGGGTTTCAAGTTTCAAATTTCGGGTTTTAAATTT
Found at i:775872 original size:14 final size:14
Alignment explanation
Indices: 775855--775971 Score: 59
Period size: 14 Copynumber: 8.9 Consensus size: 14
775845 TGGGTTTTAA
775855 GTTTCAAATTTCGG
1 GTTTCAAATTTCGG
* *
775869 GTTTTAAATTTCAG
1 GTTTCAAATTTCGG
**
775883 GTTTCAGGTTTCGG
1 GTTTCAAATTTCGG
775897 GTTTC-----T--G
1 GTTTCAAATTTCGG
* * **
775904 GTTTCGAGTTTCAA
1 GTTTCAAATTTCGG
*
775918 GTTTCACATTTCGG
1 GTTTCAAATTTCGG
* * *
775932 GTTTCGAGTTTCGA
1 GTTTCAAATTTCGG
*
775946 GTTTCAAATTTTGG
1 GTTTCAAATTTCGG
*
775960 GTTTCGAATTTC
1 GTTTCAAATTTC
775972 AAATTTCAGG
Statistics
Matches: 74, Mismatches: 22, Indels: 14
0.67 0.20 0.13
Matches are distributed among these distances:
7 6 0.08
9 1 0.01
12 1 0.01
14 66 0.89
ACGTcount: A:0.17, C:0.14, G:0.23, T:0.46
Consensus pattern (14 bp):
GTTTCAAATTTCGG
Found at i:775872 original size:21 final size:21
Alignment explanation
Indices: 775846--775943 Score: 79
Period size: 21 Copynumber: 4.7 Consensus size: 21
775836 TTTGGGTTTT
* *
775846 GGGTTTTAAGTTTCAAATTTC
1 GGGTTTCAAGTTTCAGATTTC
* * *
775867 GGGTTTTAAATTTCAGGTTTC
1 GGGTTTCAAGTTTCAGATTTC
* ** * *
775888 AGGTTTCGGGTTTCTGGTTTC
1 GGGTTTCAAGTTTCAGATTTC
* *
775909 GAGTTTCAAGTTTCACATTTC
1 GGGTTTCAAGTTTCAGATTTC
*
775930 GGGTTTCGAGTTTC
1 GGGTTTCAAGTTTC
775944 GAGTTTCAAA
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.16, C:0.13, G:0.24, T:0.46
Consensus pattern (21 bp):
GGGTTTCAAGTTTCAGATTTC
Found at i:775889 original size:7 final size:7
Alignment explanation
Indices: 775877--775923 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
775867 GGGTTTTAAA
775877 TTTCAGG
1 TTTCAGG
775884 TTTCAGG
1 TTTCAGG
*
775891 TTTCGGG
1 TTTCAGG
*
775898 TTTCTGG
1 TTTCAGG
775905 TTTC-GAG
1 TTTCAG-G
*
775912 TTTCAAG
1 TTTCAGG
775919 TTTCA
1 TTTCA
775924 CATTTCGGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
6 1 0.03
7 34 0.97
ACGTcount: A:0.13, C:0.15, G:0.26, T:0.47
Consensus pattern (7 bp):
TTTCAGG
Found at i:775936 original size:7 final size:7
Alignment explanation
Indices: 775890--775950 Score: 54
Period size: 7 Copynumber: 8.7 Consensus size: 7
775880 CAGGTTTCAG
*
775890 GTTTCGG
1 GTTTCGA
775897 GTTTCTG-
1 GTTTC-GA
775904 GTTTCGA
1 GTTTCGA
*
775911 GTTTCAA
1 GTTTCGA
775918 GTTTC-A
1 GTTTCGA
* *
775924 CATTTCGG
1 -GTTTCGA
775932 GTTTCGA
1 GTTTCGA
775939 GTTTCGA
1 GTTTCGA
775946 GTTTC
1 GTTTC
775951 AAATTTTGGG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
6 2 0.04
7 42 0.93
8 1 0.02
ACGTcount: A:0.11, C:0.16, G:0.26, T:0.46
Consensus pattern (7 bp):
GTTTCGA
Found at i:775963 original size:21 final size:21
Alignment explanation
Indices: 775939--775992 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
775929 CGGGTTTCGA
**
775939 GTTTCGAGTTTCAAATTTTGG
1 GTTTCGAGTTTCAAATTTCAG
*
775960 GTTTCGAATTTCAAATTTCAG
1 GTTTCGAGTTTCAAATTTCAG
*
775981 GTTTCGGGTTTC
1 GTTTCGAGTTTC
775993 TTGTTTCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.19, C:0.13, G:0.22, T:0.46
Consensus pattern (21 bp):
GTTTCGAGTTTCAAATTTCAG
Found at i:775992 original size:28 final size:28
Alignment explanation
Indices: 775807--776005 Score: 132
Period size: 28 Copynumber: 7.1 Consensus size: 28
775797 GGGTTTTGGG
*
775807 TTTCAGGTTTCGTGTTTCG-GTTTTCAAA
1 TTTCAGGTTTCGGGTTTCGAG-TTTCAAA
** * **
775835 TTTTGGGTTTTGGGTTTTAAGTTTCAAA
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
* **** **
775863 TTTCGGGTTTTAAATTTC-AGGTTTCAGG
1 TTTCAGGTTTCGGGTTTCGA-GTTTCAAA
* * *
775891 TTTCGGGTTTCTGGTTTCGAGTTTCAAG
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
** * *
775919 TTTCACATTTCGGGTTTCGAGTTTCGAG
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
** * *
775947 TTTCAAATTTTGGGTTTCGAATTTCAAA
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
**
775975 TTTCAGGTTTCGGGTTTCTTGTTTCAAA
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
776003 TTT
1 TTT
776006 TGAGTTTTTG
Statistics
Matches: 134, Mismatches: 34, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
27 1 0.01
28 131 0.98
29 2 0.01
ACGTcount: A:0.17, C:0.12, G:0.23, T:0.49
Consensus pattern (28 bp):
TTTCAGGTTTCGGGTTTCGAGTTTCAAA
Found at i:776076 original size:7 final size:7
Alignment explanation
Indices: 776066--776146 Score: 56
Period size: 7 Copynumber: 11.6 Consensus size: 7
776056 GGGTTCCAAA
*
776066 TTTCTGG
1 TTTCAGG
776073 TTTCAGG
1 TTTCAGG
**
776080 TTTCAAA
1 TTTCAGG
**
776087 TTTTGGG
1 TTTCAGG
*
776094 TTTCAGT
1 TTTCAGG
776101 TTTCAGG
1 TTTCAGG
776108 TTTCTA-G
1 TTTC-AGG
776115 TTTCAGG
1 TTTCAGG
**
776122 TTTCAAA
1 TTTCAGG
*
776129 TTTCGGG
1 TTTCAGG
*
776136 TTTCGGG
1 TTTCAGG
776143 TTTC
1 TTTC
776147 GACTTTCAAA
Statistics
Matches: 56, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
6 1 0.02
7 54 0.96
8 1 0.02
ACGTcount: A:0.14, C:0.14, G:0.23, T:0.49
Consensus pattern (7 bp):
TTTCAGG
Found at i:776083 original size:14 final size:14
Alignment explanation
Indices: 776072--776139 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 14
776062 CAAATTTCTG
776072 GTTTCAGGTTTCAA
1 GTTTCAGGTTTCAA
* **
776086 ATTTTGGGTTTC-A
1 GTTTCAGGTTTCAA
*
776099 GTTTTCAGGTTTCTA
1 G-TTTCAGGTTTCAA
776114 GTTTCAGGTTTCAA
1 GTTTCAGGTTTCAA
* *
776128 ATTTCGGGTTTC
1 GTTTCAGGTTTC
776140 GGGTTTCGAC
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
13 1 0.02
14 40 0.93
15 2 0.05
ACGTcount: A:0.16, C:0.13, G:0.22, T:0.49
Consensus pattern (14 bp):
GTTTCAGGTTTCAA
Found at i:776145 original size:28 final size:29
Alignment explanation
Indices: 776114--776175 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
776104 CAGGTTTCTA
*
776114 GTTTCAG-GTTTCAAATTTCGGGTTTCGG
1 GTTTCAGACTTTCAAATTTCGGGTTTCGG
*
776142 GTTTC-GACTTTCAAATTTTGGGTTTCGG
1 GTTTCAGACTTTCAAATTTCGGGTTTCGG
776170 GTTTCA
1 GTTTCA
776176 AATTTTGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 1 0.03
28 29 0.97
ACGTcount: A:0.15, C:0.15, G:0.26, T:0.45
Consensus pattern (29 bp):
GTTTCAGACTTTCAAATTTCGGGTTTCGG
Found at i:776153 original size:21 final size:21
Alignment explanation
Indices: 776057--776146 Score: 99
Period size: 21 Copynumber: 4.3 Consensus size: 21
776047 TTAGGTTTTG
* *
776057 GGTTCCAAATTTCTGGTTTCA
1 GGTTTCAAATTTCGGGTTTCA
*
776078 GGTTTCAAATTTTGGGTTTCA
1 GGTTTCAAATTTCGGGTTTCA
* ** **
776099 GTTTTCAGGTTTCTAGTTTCA
1 GGTTTCAAATTTCGGGTTTCA
*
776120 GGTTTCAAATTTCGGGTTTCG
1 GGTTTCAAATTTCGGGTTTCA
776141 GGTTTC
1 GGTTTC
776147 GACTTTCAAA
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.16, C:0.14, G:0.23, T:0.47
Consensus pattern (21 bp):
GGTTTCAAATTTCGGGTTTCA
Found at i:776164 original size:21 final size:20
Alignment explanation
Indices: 776140--776242 Score: 71
Period size: 21 Copynumber: 4.9 Consensus size: 20
776130 TTCGGGTTTC
776140 GGGTTTCGACTTTCAAATTTT
1 GGGTTTCGA-TTTCAAATTTT
*
776161 GGGTTTCGGGTTTCAAATTTT
1 GGGTTTC-GATTTCAAATTTT
** * *
776182 GATTTTCTGATTTCGAGTTTT
1 GGGTTTC-GATTTCAAATTTT
* ** *
776203 GGGTTTCTGGTTTTGAATTTA
1 GGGTTTC-GATTTCAAATTTT
*
776224 GGGTTTCTAGTTTCAAATT
1 GGGTTTCGA-TTTCAAATT
776243 ACAAATTTCA
Statistics
Matches: 63, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
21 62 0.98
22 1 0.02
ACGTcount: A:0.17, C:0.10, G:0.23, T:0.50
Consensus pattern (20 bp):
GGGTTTCGATTTCAAATTTT
Found at i:776167 original size:14 final size:14
Alignment explanation
Indices: 776073--776167 Score: 64
Period size: 14 Copynumber: 6.8 Consensus size: 14
776063 AAATTTCTGG
*
776073 TTTCAGGTTTCAAA
1 TTTCGGGTTTCAAA
* **
776087 TTTTGGGTTTCAGT
1 TTTCGGGTTTCAAA
* * *
776101 TTTCAGGTTTCTAG
1 TTTCGGGTTTCAAA
*
776115 TTTCAGGTTTCAAA
1 TTTCGGGTTTCAAA
***
776129 TTTCGGGTTTCGGG
1 TTTCGGGTTTCAAA
**
776143 TTTCGACTTTCAAA
1 TTTCGGGTTTCAAA
*
776157 TTTTGGGTTTC
1 TTTCGGGTTTC
776168 GGGTTTCAAA
Statistics
Matches: 58, Mismatches: 23, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
14 58 1.00
ACGTcount: A:0.16, C:0.14, G:0.22, T:0.48
Consensus pattern (14 bp):
TTTCGGGTTTCAAA
Found at i:776231 original size:42 final size:43
Alignment explanation
Indices: 776140--776242 Score: 104
Period size: 42 Copynumber: 2.5 Consensus size: 43
776130 TTCGGGTTTC
*
776140 GGGTTTC-GACTTTCAAATTTTGGGTTTCGGGTTTCAAATTTT
1 GGGTTTCTGACTTTCAAATTTTGGGTTTCGGGTTTCAAATTTA
** * * * **
776182 GATTTTCTGA-TTTCGAGTTTTGGGTTTCTGGTTTTGAATTTA
1 GGGTTTCTGACTTTCAAATTTTGGGTTTCGGGTTTCAAATTTA
*
776224 GGGTTTCT-AGTTTCAAATT
1 GGGTTTCTGACTTTCAAATT
776243 ACAAATTTCA
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
41 1 0.02
42 44 0.94
43 2 0.04
ACGTcount: A:0.17, C:0.10, G:0.23, T:0.50
Consensus pattern (43 bp):
GGGTTTCTGACTTTCAAATTTTGGGTTTCGGGTTTCAAATTTA
Found at i:776333 original size:35 final size:35
Alignment explanation
Indices: 776255--776368 Score: 101
Period size: 35 Copynumber: 3.3 Consensus size: 35
776245 AAATTTCAGT
* * * *
776255 TTTTGGGTTTCG-GTTT-TAGGTTTCAAAATTTAGG
1 TTTTGGGTTTTGAGTTTCT-GGGTTCAAATTTTGGG
* *
776289 -TTTGAGGTTTTTA-TTTTTGGGTTCTAAATTTTGGG
1 TTTTG-GGTTTTGAGTTTCTGGGTTC-AAATTTTGGG
*
776324 TTTTGGGTTTTGAGTTTCTGGTTTCAAATTTTGGG
1 TTTTGGGTTTTGAGTTTCTGGGTTCAAATTTTGGG
*
776359 TTTCGGGTTT
1 TTTTGGGTTT
776369 CAGTTTTCAA
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
33 4 0.06
34 13 0.20
35 35 0.54
36 13 0.20
ACGTcount: A:0.13, C:0.05, G:0.27, T:0.54
Consensus pattern (35 bp):
TTTTGGGTTTTGAGTTTCTGGGTTCAAATTTTGGG
Found at i:776355 original size:21 final size:21
Alignment explanation
Indices: 776331--776370 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
776321 GGGTTTTGGG
*
776331 TTTTGAGTTTCTGGTTTCAAA
1 TTTTGAGTTTCGGGTTTCAAA
*
776352 TTTTGGGTTTCGGGTTTCA
1 TTTTGAGTTTCGGGTTTCA
776371 GTTTTCAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.10, G:0.25, T:0.53
Consensus pattern (21 bp):
TTTTGAGTTTCGGGTTTCAAA
Found at i:776382 original size:21 final size:21
Alignment explanation
Indices: 776358--776397 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
776348 CAAATTTTGG
*
776358 GTTTCGGGTTTCAGTTTTCAA
1 GTTTCGGGTTTCAGGTTTCAA
*
776379 GTTTTGGGTTTCAGGTTTC
1 GTTTCGGGTTTCAGGTTTC
776398 GATTTTTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.12, G:0.28, T:0.50
Consensus pattern (21 bp):
GTTTCGGGTTTCAGGTTTCAA
Found at i:776395 original size:28 final size:28
Alignment explanation
Indices: 776323--776585 Score: 100
Period size: 28 Copynumber: 9.1 Consensus size: 28
776313 TAAATTTTGG
* *
776323 GTTTTGGGTTT-TGAGTTTCTGGTTTCAA
1 GTTTTGGGTTTCAG-GTTTCAGGTTTCAA
* * *
776351 ATTTTGGGTTTCGGGTTTCAGTTTTCAA
1 GTTTTGGGTTTCAGGTTTCAGGTTTCAA
776379 GTTTTGGGTTTCAGGTTTCGATTTTTAGGTTTCAA
1 GTTTTGGGTTTCAGGTTTC-------AGGTTTCAA
* * * * **
776414 ATTTTAGGTTTTAGGTTTTAGGTTTTGA
1 GTTTTGGGTTTCAGGTTTCAGGTTTCAA
* * **
776442 TTTTTGGGTTTTATGGTTT-AGGTTTTGA
1 GTTTTGGGTTTCA-GGTTTCAGGTTTCAA
**
776470 GTTTTGGGGTTT-AGGTTTTGGGTTTCAA
1 GTTTT-GGGTTTCAGGTTTCAGGTTTCAA
*** ** ***
776498 GTTTTAAATTTCAGGTTTCAATTTTTGG
1 GTTTTGGGTTTCAGGTTTCAGGTTTCAA
* ** **
776526 GTTTTAGGTTTCAAATTTCAGGTTTCGG
1 GTTTTGGGTTTCAGGTTTCAGGTTTCAA
* ** * *
776554 GTTTCGGGTTTCAAATTTTAGGTTTCAG
1 GTTTTGGGTTTCAGGTTTCAGGTTTCAA
776582 GTTT
1 GTTT
776586 CTGTTTTCGG
Statistics
Matches: 183, Mismatches: 40, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
27 8 0.04
28 140 0.77
29 12 0.07
35 23 0.13
ACGTcount: A:0.15, C:0.06, G:0.26, T:0.52
Consensus pattern (28 bp):
GTTTTGGGTTTCAGGTTTCAGGTTTCAA
Found at i:776409 original size:21 final size:21
Alignment explanation
Indices: 776364--776586 Score: 76
Period size: 21 Copynumber: 10.6 Consensus size: 21
776354 TTGGGTTTCG
* * *
776364 GGTTTCAGTTTTCAAGTTTTG
1 GGTTTCAGGTTTCGAGTTTTA
*
776385 GGTTTCAGGTTTCGATTTTTA
1 GGTTTCAGGTTTCGAGTTTTA
** *
776406 GGTTTCAAATTT-TAGGTTTTA
1 GGTTTCAGGTTTCGA-GTTTTA
* * * *
776427 GGTTTTAGGTTTTGATTTTTG
1 GGTTTCAGGTTTCGAGTTTTA
* *
776448 GGTTTTATGGTTTAG-GTTTTGA
1 GGTTTCA-GGTTTCGAGTTTT-A
* ** * *
776470 GTTTTGGGGTTTAG-GTTTTG
1 GGTTTCAGGTTTCGAGTTTTA
* ** * *
776490 GGTTTCAAGTTTTAAATTTCA
1 GGTTTCAGGTTTCGAGTTTTA
** * *
776511 GGTTTCAATTTTTGGGTTTTA
1 GGTTTCAGGTTTCGAGTTTTA
** **
776532 GGTTTCAAATTTC-AGGTTTCG
1 GGTTTCAGGTTTCGA-GTTTTA
* * *
776553 GGTTTCGGGTTTCAAATTTTA
1 GGTTTCAGGTTTCGAGTTTTA
776574 GGTTTCAGGTTTC
1 GGTTTCAGGTTTC
776587 TGTTTTCGGG
Statistics
Matches: 148, Mismatches: 47, Indels: 14
0.71 0.22 0.07
Matches are distributed among these distances:
20 9 0.06
21 127 0.86
22 12 0.08
ACGTcount: A:0.16, C:0.07, G:0.26, T:0.52
Consensus pattern (21 bp):
GGTTTCAGGTTTCGAGTTTTA
Found at i:776501 original size:14 final size:14
Alignment explanation
Indices: 776401--776503 Score: 80
Period size: 14 Copynumber: 7.4 Consensus size: 14
776391 AGGTTTCGAT
* *
776401 TTTTAGGTTTCAAA
1 TTTTAGGTTTTAAG
*
776415 TTTTAGGTTTTAGG
1 TTTTAGGTTTTAAG
* *
776429 TTTTAGGTTTTGAT
1 TTTTAGGTTTTAAG
* *
776443 TTTTGGGTTTTATG
1 TTTTAGGTTTTAAG
* *
776457 GTTTAGGTTTTGAG
1 TTTTAGGTTTTAAG
* * *
776471 TTTTGGGGTTTAGG
1 TTTTAGGTTTTAAG
* *
776485 TTTTGGGTTTCAAG
1 TTTTAGGTTTTAAG
776499 TTTTA
1 TTTTA
776504 AATTTCAGGT
Statistics
Matches: 66, Mismatches: 23, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
14 66 1.00
ACGTcount: A:0.15, C:0.02, G:0.27, T:0.56
Consensus pattern (14 bp):
TTTTAGGTTTTAAG
Found at i:776551 original size:7 final size:7
Alignment explanation
Indices: 776506--776615 Score: 58
Period size: 7 Copynumber: 15.7 Consensus size: 7
776496 AAGTTTTAAA
776506 TTTCAGG
1 TTTCAGG
**
776513 TTTCAAT
1 TTTCAGG
**
776520 TTTTGGG
1 TTTCAGG
*
776527 TTTTAGG
1 TTTCAGG
**
776534 TTTCAAA
1 TTTCAGG
776541 TTTCAGG
1 TTTCAGG
*
776548 TTTCGGG
1 TTTCAGG
*
776555 TTTCGGG
1 TTTCAGG
**
776562 TTTCAAA
1 TTTCAGG
*
776569 TTTTAGG
1 TTTCAGG
776576 TTTCAGG
1 TTTCAGG
* *
776583 TTTCTGT
1 TTTCAGG
*
776590 TTTCGGG
1 TTTCAGG
**
776597 TTTTGGG
1 TTTCAGG
*
776604 TTTCATG
1 TTTCAGG
776611 TTTCA
1 TTTCA
776616 AATTTTGGGT
Statistics
Matches: 75, Mismatches: 28, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
7 75 1.00
ACGTcount: A:0.14, C:0.11, G:0.25, T:0.51
Consensus pattern (7 bp):
TTTCAGG
Found at i:776598 original size:21 final size:22
Alignment explanation
Indices: 776548--776613 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 22
776538 AAATTTCAGG
**
776548 TTTCGGGTTTCGGGTTTCAAAT
1 TTTCGGGTTTCGGGTTTCATGT
* *
776570 TTT-AGGTTTCAGGTTTC-TGT
1 TTTCGGGTTTCGGGTTTCATGT
*
776590 TTTCGGGTTTTGGGTTTCATGT
1 TTTCGGGTTTCGGGTTTCATGT
776612 TT
1 TT
776614 CAAATTTTGG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
20 4 0.11
21 23 0.66
22 8 0.23
ACGTcount: A:0.09, C:0.11, G:0.27, T:0.53
Consensus pattern (22 bp):
TTTCGGGTTTCGGGTTTCATGT
Found at i:776599 original size:49 final size:49
Alignment explanation
Indices: 776506--776754 Score: 209
Period size: 49 Copynumber: 5.1 Consensus size: 49
776496 AAGTTTTAAA
* * * ** *
776506 TTTCAGGTTTCAATTTTTGGGTTTTAGGTTTCAAATTTCAGGTTTCGGG
1 TTTCAGGTTTCAAATTTTAGGTTTCAGGTTTCAGTTTTCGGGTTTCGGG
* * *
776555 TTTCGGGTTTCAAATTTTAGGTTTCAGGTTTCTGTTTTCGGGTTTTGGG
1 TTTCAGGTTTCAAATTTTAGGTTTCAGGTTTCAGTTTTCGGGTTTCGGG
* * ** * *
776604 TTTCATGTTTCAAATTTTGGGTTTTTGGTTTC-GATTTTTGGGTTTCGTG
1 TTTCAGGTTTCAAATTTTAGGTTTCAGGTTTCAG-TTTTCGGGTTTCGGG
* * **
776653 TTTCAGGTTTAAAATTTTAGGTTTCATGTTTCGAGTTTT-GGGTTTCCAG
1 TTTCAGGTTTCAAATTTTAGGTTTCAGGTTTC-AGTTTTCGGGTTTCGGG
* * * ** * *
776702 TTTTAGGTTTCGAGTTTTAAATTTAAGGTTT-AGGTTTT-GGTTTTCGGG
1 TTTCAGGTTTCAAATTTTAGGTTTCAGGTTTCA-GTTTTCGGGTTTCGGG
776750 TTTCA
1 TTTCA
776755 AATTTTGTGT
Statistics
Matches: 159, Mismatches: 37, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
47 1 0.01
48 17 0.11
49 136 0.86
50 4 0.03
51 1 0.01
ACGTcount: A:0.14, C:0.09, G:0.25, T:0.52
Consensus pattern (49 bp):
TTTCAGGTTTCAAATTTTAGGTTTCAGGTTTCAGTTTTCGGGTTTCGGG
Found at i:776614 original size:21 final size:21
Alignment explanation
Indices: 776541--776662 Score: 70
Period size: 21 Copynumber: 5.8 Consensus size: 21
776531 AGGTTTCAAA
* * *
776541 TTTCAGGTTTCGGGTTTCGGG
1 TTTCATGTTTCAGGTTTTGGG
** * **
776562 TTTCAAATTTTAGGTTTCAGG
1 TTTCATGTTTCAGGTTTTGGG
*
776583 TTTC-TGTTTTCGGGTTTTGGG
1 TTTCATG-TTTCAGGTTTTGGG
**
776604 TTTCATGTTTCAAATTTTGGG
1 TTTCATGTTTCAGGTTTTGGG
* *
776625 TTT-TTGGTTTC-GATTTTTGGG
1 TTTCAT-GTTTCAG-GTTTTGGG
*
776646 TTTCGTGTTTCAGGTTT
1 TTTCATGTTTCAGGTTT
776663 AAAATTTTAG
Statistics
Matches: 76, Mismatches: 19, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
20 1 0.01
21 71 0.93
22 4 0.05
ACGTcount: A:0.10, C:0.10, G:0.27, T:0.53
Consensus pattern (21 bp):
TTTCATGTTTCAGGTTTTGGG
Found at i:776690 original size:14 final size:14
Alignment explanation
Indices: 776364--776720 Score: 78
Period size: 14 Copynumber: 26.0 Consensus size: 14
776354 TTGGGTTTCG
776364 GGTTTC-AGTTTTCA
1 GGTTTCGAGTTTT-A
* * * *
776378 AGTTTTGGGTTTCA
1 GGTTTCGAGTTTTA
*
776392 GGTTTCGATTTTTA
1 GGTTTCGAGTTTTA
* *
776406 GGTTTCAAATTTTA
1 GGTTTCGAGTTTTA
*
776420 GGTTT-TAGGTTTTA
1 GGTTTCGA-GTTTTA
* * *
776434 GGTTTTGATTTTTG
1 GGTTTCGAGTTTTA
* *
776448 GGTTT-TATGGTTTA
1 GGTTTCGA-GTTTTA
* *
776462 GGTTTTGAGTTTTGG
1 GGTTTCGAGTTTT-A
* *
776477 GGTTTAG-GTTTTG
1 GGTTTCGAGTTTTA
*
776490 GGTTTCAAGTTTTA
1 GGTTTCGAGTTTTA
** *
776504 AATTTC-AGGTTTCA
1 GGTTTCGA-GTTTTA
** * *
776518 ATTTTTGGGTTTTA
1 GGTTTCGAGTTTTA
* * *
776532 GGTTTCAAATTTCA
1 GGTTTCGAGTTTTA
* **
776546 GGTTTCGGGTTTCG
1 GGTTTCGAGTTTTA
* *
776560 GGTTTCAAATTTTA
1 GGTTTCGAGTTTTA
776574 GGTTTC-AGGTTTCT-
1 GGTTTCGA-GTTT-TA
* * *
776588 GTTTTCGGGTTTTG
1 GGTTTCGAGTTTTA
*
776602 GGTTTC-ATGTTTCA
1 GGTTTCGA-GTTTTA
** * * *
776616 AATTTTGGGTTTTT
1 GGTTTCGAGTTTTA
* *
776630 GGTTTCGATTTTTG
1 GGTTTCGAGTTTTA
* *
776644 GGTTTCGTGTTTCA
1 GGTTTCGAGTTTTA
** *
776658 GGTTTAAAATTTTA
1 GGTTTCGAGTTTTA
776672 GGTTTC-A----T-
1 GGTTTCGAGTTTTA
*
776680 -GTTTCGAGTTTTG
1 GGTTTCGAGTTTTA
*
776693 GGTTTCCAGTTTTA
1 GGTTTCGAGTTTTA
776707 GGTTTCGAGTTTTA
1 GGTTTCGAGTTTTA
776721 AATTTAAGGT
Statistics
Matches: 239, Mismatches: 82, Indels: 44
0.65 0.22 0.12
Matches are distributed among these distances:
7 5 0.02
8 1 0.00
9 1 0.00
12 1 0.00
13 12 0.05
14 206 0.86
15 13 0.05
ACGTcount: A:0.15, C:0.07, G:0.25, T:0.53
Consensus pattern (14 bp):
GGTTTCGAGTTTTA
Found at i:776816 original size:28 final size:29
Alignment explanation
Indices: 776785--776845 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
776775 GAGTTCCAGG
* *
776785 TTTCAAATTTTGGGTTTTGGGTTAT-AGT
1 TTTCAAATTTCGGGTTTCGGGTTATAAGT
* *
776813 TTTCAAGTTTCGGGTTTCGGGTTTTAAGT
1 TTTCAAATTTCGGGTTTCGGGTTATAAGT
776842 TTTC
1 TTTC
776846 GACTTTCTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 21 0.75
29 7 0.25
ACGTcount: A:0.15, C:0.08, G:0.25, T:0.52
Consensus pattern (29 bp):
TTTCAAATTTCGGGTTTCGGGTTATAAGT
Found at i:776852 original size:29 final size:28
Alignment explanation
Indices: 776785--776852 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
776775 GAGTTCCAGG
* * *
776785 TTTCAAATTTTGGGTTTTGGGTTATAGT
1 TTTCAACTTTCGGGTTTCGGGTTATAGT
* *
776813 TTTCAAGTTTCGGGTTTCGGGTTTTAAGT
1 TTTCAACTTTCGGGTTTCGGGTTAT-AGT
*
776842 TTTCGACTTTC
1 TTTCAACTTTC
776853 TATTTCGGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 21 0.64
29 12 0.36
ACGTcount: A:0.15, C:0.10, G:0.24, T:0.51
Consensus pattern (28 bp):
TTTCAACTTTCGGGTTTCGGGTTATAGT
Found at i:776881 original size:7 final size:7
Alignment explanation
Indices: 776871--776902 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
776861 GTTTCAAATT
776871 TCGGGGC
1 TCGGGGC
776878 TCGGGGC
1 TCGGGGC
776885 TCGGGGC
1 TCGGGGC
776892 TCGGGGC
1 TCGGGGC
776899 TCGG
1 TCGG
776903 CTCGGGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.00, C:0.28, G:0.56, T:0.16
Consensus pattern (7 bp):
TCGGGGC
Found at i:776969 original size:26 final size:27
Alignment explanation
Indices: 776927--777004 Score: 124
Period size: 26 Copynumber: 2.9 Consensus size: 27
776917 TTAGGGTTTA
776927 GGGTTCGGGGTTCGGGGTTCGGGGTTC-
1 GGGTTC-GGGTTCGGGGTTCGGGGTTCG
776954 GGGTTCGGGTTCGGGGTTCGGGGTTCG
1 GGGTTCGGGTTCGGGGTTCGGGGTTCG
*
776981 GGGTTCGGGTTC-GGGTTAGGGGTT
1 GGGTTCGGGTTCGGGGTTCGGGGTT
777005 TAGGGTTTAG
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
26 31 0.63
27 18 0.37
ACGTcount: A:0.01, C:0.13, G:0.55, T:0.31
Consensus pattern (27 bp):
GGGTTCGGGTTCGGGGTTCGGGGTTCG
Found at i:776969 original size:33 final size:33
Alignment explanation
Indices: 776927--777004 Score: 147
Period size: 33 Copynumber: 2.4 Consensus size: 33
776917 TTAGGGTTTA
776927 GGGTTCGGGGTTCGGGGTTCGGGGTTCGGGTTC
1 GGGTTCGGGGTTCGGGGTTCGGGGTTCGGGTTC
776960 GGGTTCGGGGTTCGGGGTTCGGGGTTCGGGTTC
1 GGGTTCGGGGTTCGGGGTTCGGGGTTCGGGTTC
*
776993 GGGTTAGGGGTT
1 GGGTTCGGGGTT
777005 TAGGGTTTAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.01, C:0.13, G:0.55, T:0.31
Consensus pattern (33 bp):
GGGTTCGGGGTTCGGGGTTCGGGGTTCGGGTTC
Found at i:778934 original size:7 final size:7
Alignment explanation
Indices: 776906--778933 Score: 2917
Period size: 7 Copynumber: 296.7 Consensus size: 7
776896 GGCTCGGCTC
*
776906 GGGTTTA
1 GGGTTCA
*
776913 GGGTTTA
1 GGGTTCA
*
776920 GGGTTTA
1 GGGTTCA
*
776927 GGGTTCG
1 GGGTTCA
*
776934 GGGTTCG
1 GGGTTCA
*
776941 GGGTTCG
1 GGGTTCA
776948 GGGTTC-
1 GGGTTCA
776954 GGGTTC-
1 GGGTTCA
*
776960 GGGTTCG
1 GGGTTCA
*
776967 GGGTTCG
1 GGGTTCA
*
776974 GGGTTCG
1 GGGTTCA
776981 GGGTTC-
1 GGGTTCA
776987 GGGTTC-
1 GGGTTCA
776993 GGGTT-A
1 GGGTTCA
*
776999 GGGGTTTA
1 -GGGTTCA
*
777007 GGGTTTA
1 GGGTTCA
*
777014 GGGTTTA
1 GGGTTCA
*
777021 GGGTTTA
1 GGGTTCA
*
777028 GGGTTTA
1 GGGTTCA
*
777035 GGGTTTA
1 GGGTTCA
*
777042 GGGTTTA
1 GGGTTCA
*
777049 GGGTTTA
1 GGGTTCA
*
777056 GGGTTTA
1 GGGTTCA
*
777063 GGGTTTA
1 GGGTTCA
*
777070 GGGTTTA
1 GGGTTCA
*
777077 GGGTTTA
1 GGGTTCA
*
777084 GGGTTTA
1 GGGTTCA
*
777091 GGGTTTA
1 GGGTTCA
*
777098 GGGTTTA
1 GGGTTCA
*
777105 GGGTTTA
1 GGGTTCA
*
777112 GGGTTTA
1 GGGTTCA
*
777119 -GGTT-T
1 GGGTTCA
*
777124 GGGTTTA
1 GGGTTCA
*
777131 GGGTTTA
1 GGGTTCA
*
777138 GGGTTTA
1 GGGTTCA
*
777145 GGGTTTA
1 GGGTTCA
*
777152 GGGTTTA
1 GGGTTCA
*
777159 GGGTTTA
1 GGGTTCA
*
777166 GGGTTTA
1 GGGTTCA
*
777173 GGGTTTA
1 GGGTTCA
*
777180 GGGTTTA
1 GGGTTCA
*
777187 -GGTTTA
1 GGGTTCA
*
777193 GGGTTTA
1 GGGTTCA
*
777200 GGGTTTA
1 GGGTTCA
*
777207 GGGTTTA
1 GGGTTCA
*
777214 GGGTTTA
1 GGGTTCA
*
777221 GGGTTTA
1 GGGTTCA
*
777228 GGGTTTA
1 GGGTTCA
*
777235 GGGTTTA
1 GGGTTCA
*
777242 -GGTTTA
1 GGGTTCA
*
777248 GGGTTTA
1 GGGTTCA
*
777255 GGGTTTA
1 GGGTTCA
*
777262 -GGTTTA
1 GGGTTCA
*
777268 GGGTTTA
1 GGGTTCA
*
777275 GGGTTTA
1 GGGTTCA
*
777282 -GGTTTA
1 GGGTTCA
*
777288 GGGTTTA
1 GGGTTCA
*
777295 GGGTTTA
1 GGGTTCA
*
777302 GGGTTTA
1 GGGTTCA
*
777309 GGGTTTA
1 GGGTTCA
777316 GGGTT-A
1 GGGTTCA
*
777322 GGGTTTA
1 GGGTTCA
*
777329 GGGTTTA
1 GGGTTCA
*
777336 GGGTTTA
1 GGGTTCA
*
777343 GGGTTTA
1 GGGTTCA
*
777350 GGGTTTA
1 GGGTTCA
*
777357 GGGTTTA
1 GGGTTCA
777364 GGGTTCA
1 GGGTTCA
777371 GGGTTCA
1 GGGTTCA
777378 GGGTTC-
1 GGGTTCA
777384 GGGTTCA
1 GGGTTCA
777391 GGGTTCA
1 GGGTTCA
777398 -GGTTCA
1 GGGTTCA
777404 -GGTTCA
1 GGGTTCA
777410 GGGTTCA
1 GGGTTCA
777417 GGGTTCA
1 GGGTTCA
777424 GGGTTCA
1 GGGTTCA
777431 GGGTTCA
1 GGGTTCA
777438 GGGTTCA
1 GGGTTCA
777445 GGGTTCA
1 GGGTTCA
777452 -GGTTCA
1 GGGTTCA
777458 GGGTTCA
1 GGGTTCA
777465 GGGTTCA
1 GGGTTCA
777472 -GGTTCA
1 GGGTTCA
777478 -GGTTCA
1 GGGTTCA
777484 GGGTTCA
1 GGGTTCA
777491 -GGTTCA
1 GGGTTCA
777497 GGGTTCA
1 GGGTTCA
777504 GGGTTCA
1 GGGTTCA
777511 GGGTTCA
1 GGGTTCA
777518 GGGTTCA
1 GGGTTCA
777525 GGGTTCA
1 GGGTTCA
777532 GGGTTCA
1 GGGTTCA
777539 GGGTTCA
1 GGGTTCA
777546 GGGTTCA
1 GGGTTCA
777553 --GTTCA
1 GGGTTCA
777558 GGGTTCA
1 GGGTTCA
777565 -GGTTCA
1 GGGTTCA
777571 GGGTTCA
1 GGGTTCA
777578 GGGTTCA
1 GGGTTCA
777585 GGGTTCA
1 GGGTTCA
777592 -GGTTCA
1 GGGTTCA
777598 GGGTTCA
1 GGGTTCA
777605 GGGTTCA
1 GGGTTCA
777612 GGGTTCA
1 GGGTTCA
777619 -GGTTCA
1 GGGTTCA
777625 GGGTTCA
1 GGGTTCA
777632 GGGTTCA
1 GGGTTCA
777639 GGGTTCA
1 GGGTTCA
777646 GGGTTCA
1 GGGTTCA
777653 GGGTTCA
1 GGGTTCA
777660 GGGTTCA
1 GGGTTCA
777667 GGGTTCA
1 GGGTTCA
777674 GGGTTC-
1 GGGTTCA
777680 GGGTTCA
1 GGGTTCA
777687 GGGTTCA
1 GGGTTCA
777694 GGGTTCA
1 GGGTTCA
777701 -GGTTCA
1 GGGTTCA
777707 GGGTTCA
1 GGGTTCA
777714 GGGTTCA
1 GGGTTCA
777721 GGGTTCA
1 GGGTTCA
777728 GGGTTCA
1 GGGTTCA
777735 GGGTTCA
1 GGGTTCA
777742 GGGTTCA
1 GGGTTCA
777749 GGGTTCA
1 GGGTTCA
777756 GGGTTCA
1 GGGTTCA
777763 GGGTTCA
1 GGGTTCA
777770 -GGTTCA
1 GGGTTCA
777776 -GGTTCA
1 GGGTTCA
777782 GGGTTCA
1 GGGTTCA
777789 GGGTTCA
1 GGGTTCA
777796 GGGTTCA
1 GGGTTCA
777803 GGGTTCA
1 GGGTTCA
777810 -GGTTCA
1 GGGTTCA
777816 -GGTTCA
1 GGGTTCA
777822 GGGTTCA
1 GGGTTCA
777829 GGGTTCA
1 GGGTTCA
777836 GGGTTCA
1 GGGTTCA
777843 GGGTTCA
1 GGGTTCA
777850 GGGTTCA
1 GGGTTCA
777857 GGGTTCA
1 GGGTTCA
777864 GGGTTCA
1 GGGTTCA
777871 GGGTTCA
1 GGGTTCA
777878 GGGTTCA
1 GGGTTCA
777885 GGGTTCA
1 GGGTTCA
777892 -GGTTCA
1 GGGTTCA
777898 GGGTTCA
1 GGGTTCA
777905 GGGTTCA
1 GGGTTCA
777912 GGGTTCA
1 GGGTTCA
777919 GGGTTCA
1 GGGTTCA
777926 GGGTTCA
1 GGGTTCA
777933 GGGTTCA
1 GGGTTCA
777940 GGGTTCA
1 GGGTTCA
777947 GGGTTCA
1 GGGTTCA
777954 GGGTTCA
1 GGGTTCA
777961 GGGTTCA
1 GGGTTCA
777968 GGGTTCA
1 GGGTTCA
777975 -GGTTCA
1 GGGTTCA
777981 -GGTTCA
1 GGGTTCA
777987 GGGTTCA
1 GGGTTCA
777994 GGGTTCA
1 GGGTTCA
778001 -GGTTCA
1 GGGTTCA
778007 GGGTTCA
1 GGGTTCA
778014 GGGTTCA
1 GGGTTCA
778021 GGGTTCA
1 GGGTTCA
778028 GGGTTCA
1 GGGTTCA
778035 GGGTTCA
1 GGGTTCA
778042 GGGTTCA
1 GGGTTCA
778049 -GGTTCA
1 GGGTTCA
778055 GGGTTCA
1 GGGTTCA
778062 GGGTTCA
1 GGGTTCA
778069 GGGGTTCA
1 -GGGTTCA
778077 GGGTTCA
1 GGGTTCA
778084 GGGTTCA
1 GGGTTCA
778091 GGGTTCA
1 GGGTTCA
778098 GGGTTCA
1 GGGTTCA
778105 GGGTTCA
1 GGGTTCA
778112 -GGTTCA
1 GGGTTCA
778118 GGGTTCA
1 GGGTTCA
778125 GGGTTCA
1 GGGTTCA
778132 GGGTTCA
1 GGGTTCA
778139 GGGTTCA
1 GGGTTCA
778146 GGGTTCA
1 GGGTTCA
*
778153 GGGTTCC
1 GGGTTCA
778160 GGGTTCA
1 GGGTTCA
778167 GGGTTCA
1 GGGTTCA
778174 -GGTTCA
1 GGGTTCA
778180 GGGTTCA
1 GGGTTCA
778187 -GGTTCA
1 GGGTTCA
778193 -GGTTCA
1 GGGTTCA
778199 GGGTTTCA
1 GGG-TTCA
778207 GGGTTCA
1 GGGTTCA
778214 GGGTTCA
1 GGGTTCA
778221 GGGTTCA
1 GGGTTCA
778228 GGGTTCA
1 GGGTTCA
778235 -GGTTCA
1 GGGTTCA
778241 GGGTTCA
1 GGGTTCA
778248 GGGTTCA
1 GGGTTCA
778255 GGGTTCA
1 GGGTTCA
778262 GGGTTCA
1 GGGTTCA
778269 GGGTTCA
1 GGGTTCA
778276 GGGTTCA
1 GGGTTCA
778283 GGGTTCA
1 GGGTTCA
778290 GGGTTCA
1 GGGTTCA
778297 -GGTTCA
1 GGGTTCA
778303 GGGTTCA
1 GGGTTCA
778310 -GGTTCA
1 GGGTTCA
778316 GGGTTCA
1 GGGTTCA
778323 GGGTTCA
1 GGGTTCA
778330 GGGTTCA
1 GGGTTCA
778337 GGGTTCA
1 GGGTTCA
778344 -GGTTCA
1 GGGTTCA
778350 GGGTTCA
1 GGGTTCA
778357 GGGTTTCA
1 GGG-TTCA
778365 GGGTTCA
1 GGGTTCA
778372 GGGTTCA
1 GGGTTCA
778379 GGGTTCA
1 GGGTTCA
778386 GGGTTCA
1 GGGTTCA
778393 GGGTTCA
1 GGGTTCA
778400 -GGTTCA
1 GGGTTCA
778406 GGGTTCA
1 GGGTTCA
778413 -GGTTCA
1 GGGTTCA
778419 GGGTTCA
1 GGGTTCA
778426 -GGTTCA
1 GGGTTCA
778432 GGGTTCA
1 GGGTTCA
778439 -GGTTCA
1 GGGTTCA
778445 GGGTTCA
1 GGGTTCA
778452 GGGTTCA
1 GGGTTCA
778459 GGGTTCA
1 GGGTTCA
778466 GGGTTCA
1 GGGTTCA
778473 GGGTTCA
1 GGGTTCA
778480 GGGTTCA
1 GGGTTCA
778487 GGGTTCA
1 GGGTTCA
778494 GGGTTCA
1 GGGTTCA
778501 GGGTTCA
1 GGGTTCA
778508 GGGTTCA
1 GGGTTCA
778515 GGGTTCA
1 GGGTTCA
778522 GGGTTCA
1 GGGTTCA
778529 GGGTTCA
1 GGGTTCA
778536 GGGTTCA
1 GGGTTCA
778543 GGGTTCA
1 GGGTTCA
778550 GGGTTCA
1 GGGTTCA
778557 GGGTTCA
1 GGGTTCA
778564 GGGTTCA
1 GGGTTCA
*
778571 GGTTTCA
1 GGGTTCA
778578 -GGTTCA
1 GGGTTCA
778584 GGGTTCA
1 GGGTTCA
778591 GGGTTCA
1 GGGTTCA
778598 GGGTTCA
1 GGGTTCA
778605 GGGTTCA
1 GGGTTCA
778612 GGGTTCA
1 GGGTTCA
778619 -GGTTCA
1 GGGTTCA
778625 GGGTTCA
1 GGGTTCA
778632 -GGTTCA
1 GGGTTCA
778638 GGGTTCA
1 GGGTTCA
778645 -GGTTCA
1 GGGTTCA
778651 GGGTTCA
1 GGGTTCA
778658 GGGTTTCA
1 GGG-TTCA
778666 GGGTTCA
1 GGGTTCA
778673 GGGTTCA
1 GGGTTCA
778680 GGGTTCA
1 GGGTTCA
778687 --GTTCA
1 GGGTTCA
778692 GGGTTCA
1 GGGTTCA
778699 GGGTTCA
1 GGGTTCA
778706 GGGTTCA
1 GGGTTCA
778713 GGGTTCA
1 GGGTTCA
778720 GGGTTCA
1 GGGTTCA
778727 GGGTTCA
1 GGGTTCA
778734 -GGTTCA
1 GGGTTCA
778740 GGGTTCA
1 GGGTTCA
778747 GGGTTCA
1 GGGTTCA
778754 GGGTTCA
1 GGGTTCA
778761 GGGTTCA
1 GGGTTCA
778768 GGGTTTCA
1 GGG-TTCA
778776 GGGTTCA
1 GGGTTCA
778783 GGGTTCA
1 GGGTTCA
778790 GGGGTTCA
1 -GGGTTCA
778798 -GGTTCA
1 GGGTTCA
778804 GGGTTCA
1 GGGTTCA
778811 GGGTTCA
1 GGGTTCA
778818 -GGTTCA
1 GGGTTCA
778824 GGGTTCA
1 GGGTTCA
778831 GGGTTCA
1 GGGTTCA
*
778838 GGGTTTA
1 GGGTTCA
*
778845 GGGTTTA
1 GGGTTCA
*
778852 GGGTTTA
1 GGGTTCA
*
778859 GGGTTTA
1 GGGTTCA
*
778866 GGGTTTA
1 GGGTTCA
*
778873 GGGTTTA
1 GGGTTCA
*
778880 GGGTTTA
1 GGGTTCA
*
778887 GGGTTTA
1 GGGTTCA
*
778894 GGGTTTA
1 GGGTTCA
*
778901 GGGTTTA
1 GGGTTCA
*
778908 GGGTTTA
1 GGGTTCA
*
778915 GGGTTTA
1 GGGTTCA
*
778922 GGGTTTA
1 GGGTTCA
778929 GGGTT
1 GGGTT
778934 TTGGGTTTTA
Statistics
Matches: 1956, Mismatches: 10, Indels: 110
0.94 0.00 0.05
Matches are distributed among these distances:
5 10 0.01
6 300 0.15
7 1603 0.82
8 43 0.02
ACGTcount: A:0.14, C:0.11, G:0.42, T:0.33
Consensus pattern (7 bp):
GGGTTCA
Found at i:778984 original size:21 final size:21
Alignment explanation
Indices: 778960--779046 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 21
778950 GGGTTTAGGG
*
778960 TTTTAGGTTTCAAATTTTAGT
1 TTTTAGGTTTCAAATTTTAGA
* * * *
778981 TTTTGGGTTTAAAATTTTGGG
1 TTTTAGGTTTCAAATTTTAGA
* * *
779002 TTATGGGTTTCAAGTTTTAGA
1 TTTTAGGTTTCAAATTTTAGA
* * * *
779023 TTTCAGATTTCAGATTTCAGA
1 TTTTAGGTTTCAAATTTTAGA
779044 TTT
1 TTT
779047 CAAATTTTGA
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.23, C:0.06, G:0.20, T:0.52
Consensus pattern (21 bp):
TTTTAGGTTTCAAATTTTAGA
Found at i:779030 original size:7 final size:7
Alignment explanation
Indices: 779020--779053 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
779010 TTCAAGTTTT
779020 AGATTTC
1 AGATTTC
779027 AGATTTC
1 AGATTTC
779034 AGATTTC
1 AGATTTC
779041 AGATTTC
1 AGATTTC
*
779048 AAATTT
1 AGATTT
779054 TGAATTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (7 bp):
AGATTTC
Found at i:779087 original size:21 final size:21
Alignment explanation
Indices: 779009--779102 Score: 64
Period size: 21 Copynumber: 4.5 Consensus size: 21
778999 GGGTTATGGG
* * *
779009 TTTCAAGTTTTAGATTTCAGA
1 TTTCAGGTTTCAGATTTCAAA
*
779030 TTTCAGATTTCAGATTTCAAA
1 TTTCAGGTTTCAGATTTCAAA
* * ** *
779051 TTT-TGAATTTTGGGTTTCAAA
1 TTTCAG-GTTTCAGATTTCAAA
* **
779072 TTTCAGGTTTCAGGTTTTGAA
1 TTTCAGGTTTCAGATTTCAAA
779093 TTTCAGGTTT
1 TTTCAGGTTT
779103 GGGATTTCGT
Statistics
Matches: 57, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
20 1 0.02
21 55 0.96
22 1 0.02
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (21 bp):
TTTCAGGTTTCAGATTTCAAA
Found at i:779151 original size:14 final size:14
Alignment explanation
Indices: 779134--779243 Score: 76
Period size: 14 Copynumber: 7.9 Consensus size: 14
779124 TAGGTTTTGA
779134 GTTTTGGGTTTCAG
1 GTTTTGGGTTTCAG
* *
779148 GTTTTGGTTTTCAA
1 GTTTTGGGTTTCAG
* *
779162 ATTTCGGGTTTCAG
1 GTTTTGGGTTTCAG
*** *
779176 GTTTCAAGTTTCAA
1 GTTTTGGGTTTCAG
* *
779190 ATTTTAGGTTTCAG
1 GTTTTGGGTTTCAG
* *
779204 GTTTCGGGTTTCAA
1 GTTTTGGGTTTCAG
* * *
779218 ATTTTAGGTTTTAG
1 GTTTTGGGTTTCAG
*
779232 GTTTTTGGTTTC
1 GTTTTGGGTTTC
779244 GAGTTTCAAG
Statistics
Matches: 70, Mismatches: 26, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
14 70 1.00
ACGTcount: A:0.15, C:0.09, G:0.25, T:0.51
Consensus pattern (14 bp):
GTTTTGGGTTTCAG
Found at i:779152 original size:28 final size:28
Alignment explanation
Indices: 779140--779525 Score: 167
Period size: 28 Copynumber: 13.3 Consensus size: 28
779130 TTGAGTTTTG
* *
779140 GGTTTCAGGTTT-TGGTTTTCAAATTTCG
1 GGTTTCAGGTTTCAGG-TTTCAAATTTCA
* *
779168 GGTTTCAGGTTTCAAGTTTCAAATTTTA
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
* *
779196 GGTTTCAGGTTTCGGGTTTCAAATTTTA
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
* ** * *
779224 GGTTTTAGGTTTTTGGTTTCGAGTTTCA
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
* * ** * *
779252 AGTTTC-GAGTTTCGGGTTTTGAGTTTCG
1 GGTTTCAG-GTTTCAGGTTTCAAATTTCA
* *
779280 GGTTTCAAATTTCGGGTTTC-GAATTTCAAATTTTA
1 GGTTTC--A-----GGTTTCAG-GTTTCAAATTTCA
* **
779315 GGTTTCAGGTTTCGGGTTT-GGATATTCA
1 GGTTTCAGGTTTCAGGTTTCAAAT-TTCA
** *
779343 GGTTTTGGGTTTCTGGTTTCAAATTTTTGGTTTCA
1 GGTTTCAGGTTTCAGGTTTCAAA-------TTTCA
* * *
779378 GGTTTCAGGATTCGGGTTTCAAATTTCG
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
779406 GGTTTC-GAGTTTCAGGTTTCAAATTTC-
1 GGTTTCAG-GTTTCAGGTTTCAAATTTCA
* * * **
779433 GAGTTTCTGGTTTTAGGTTTTAAATTTTGG
1 G-GTTTCAGGTTTCAGGTTTCAAA-TTTCA
* *
779463 GGTTT-AGGATTT-AGGTTCCAAATTTTA
1 GGTTTCAGG-TTTCAGGTTTCAAATTTCA
* * * *
779490 GGTTTCGGGTTTCATGTTTAAAATTTCG
1 GGTTTCAGGTTTCAGGTTTCAAATTTCA
779518 GGTTTCAG
1 GGTTTCAG
779526 TTTTTGGTGA
Statistics
Matches: 273, Mismatches: 56, Indels: 58
0.71 0.14 0.15
Matches are distributed among these distances:
27 16 0.06
28 197 0.72
29 14 0.05
30 1 0.00
33 1 0.00
34 1 0.00
35 41 0.15
36 2 0.01
ACGTcount: A:0.17, C:0.10, G:0.25, T:0.47
Consensus pattern (28 bp):
GGTTTCAGGTTTCAGGTTTCAAATTTCA
Found at i:779166 original size:21 final size:22
Alignment explanation
Indices: 779114--779172 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 22
779104 GGATTTCGTG
*
779114 TTTCAAATTTTAGGTTTTGAGT
1 TTTCAAATTTCAGGTTTTGAGT
***
779136 TTT-GGGTTTCAGGTTTTG-GT
1 TTTCAAATTTCAGGTTTTGAGT
*
779156 TTTCAAATTTCGGGTTT
1 TTTCAAATTTCAGGTTT
779173 CAGGTTTCAA
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
20 5 0.18
21 20 0.71
22 3 0.11
ACGTcount: A:0.15, C:0.07, G:0.24, T:0.54
Consensus pattern (22 bp):
TTTCAAATTTCAGGTTTTGAGT
Found at i:779173 original size:7 final size:7
Alignment explanation
Indices: 779163--779426 Score: 92
Period size: 7 Copynumber: 37.7 Consensus size: 7
779153 GGTTTTCAAA
*
779163 TTTCGGG
1 TTTCAGG
779170 TTTCAGG
1 TTTCAGG
*
779177 TTTCAAG
1 TTTCAGG
**
779184 TTTCAAA
1 TTTCAGG
*
779191 TTTTAGG
1 TTTCAGG
779198 TTTCAGG
1 TTTCAGG
*
779205 TTTCGGG
1 TTTCAGG
**
779212 TTTCAAA
1 TTTCAGG
*
779219 TTTTAGG
1 TTTCAGG
*
779226 TTTTAGG
1 TTTCAGG
**
779233 TTTTTGG
1 TTTCAGG
779240 TTTC-GAG
1 TTTCAG-G
*
779247 TTTCAAG
1 TTTCAGG
779254 TTTC-GAG
1 TTTCAG-G
*
779261 TTTCGGG
1 TTTCAGG
*
779268 TTT-TGAG
1 TTTCAG-G
*
779275 TTTCGGG
1 TTTCAGG
**
779282 TTTCAAA
1 TTTCAGG
*
779289 TTTCGGG
1 TTTCAGG
*
779296 TTTC-GAA
1 TTTCAG-G
**
779303 TTTCAAA
1 TTTCAGG
*
779310 TTTTAGG
1 TTTCAGG
779317 TTTCAGG
1 TTTCAGG
*
779324 TTTCGGG
1 TTTCAGG
779331 TTT--GG
1 TTTCAGG
779336 ATATTCAGG
1 -T-TTCAGG
**
779345 TTTTGGG
1 TTTCAGG
*
779352 TTTCTGG
1 TTTCAGG
**
779359 TTTCAAA
1 TTTCAGG
**
779366 TTTTTGG
1 TTTCAGG
779373 TTTCAGG
1 TTTCAGG
779380 TTTCAGG
1 TTTCAGG
* *
779387 ATTCGGG
1 TTTCAGG
**
779394 TTTCAAA
1 TTTCAGG
*
779401 TTTCGGG
1 TTTCAGG
779408 TTTC-GAG
1 TTTCAG-G
779415 TTTCAGG
1 TTTCAGG
779422 TTTCA
1 TTTCA
779427 AATTTCGAGT
Statistics
Matches: 188, Mismatches: 55, Indels: 28
0.69 0.20 0.10
Matches are distributed among these distances:
5 2 0.01
6 5 0.03
7 175 0.93
8 4 0.02
9 2 0.01
ACGTcount: A:0.16, C:0.11, G:0.26, T:0.47
Consensus pattern (7 bp):
TTTCAGG
Found at i:779207 original size:35 final size:35
Alignment explanation
Indices: 779163--779452 Score: 117
Period size: 35 Copynumber: 8.3 Consensus size: 35
779153 GGTTTTCAAA
* *
779163 TTTCGGGTTTCAGGTTTCAAGTTTCAAATTTTAGG
1 TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
* * * *
779198 TTTCAGGTTTCGGGTTTCAAATTTTAGGTTTTAGG
1 TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
** * **
779233 TTTTTGGTTTC-GAGTTTCAAGTTTCGAGTTTCGGG
1 TTTCAGGTTTCAG-GTTTCAAGTTTCAAGTTTTAGG
* * * * * * *
779268 TTT-TGAGTTTCGGGTTTCAAATTTC-GGGTTTCGAA
1 TTTCAG-GTTTCAGGTTTCAAGTTTCAAGTTTTAG-G
** * * * *
779303 TTTCAAATTTTAGGTTTCAGGTTTC-GGGTTT-GG
1 TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
** ** * *
779336 ATATTCAGGTTTTGGGTTTCTGGTTTCAAATTTTTGG
1 -T-TTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
* ** * **
779373 TTTCAGGTTTCAGGATTCGGGTTTCAAATTTCGGG
1 TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
* *
779408 TTTC-GAGTTTCAGGTTTCAAATTTCGAGTTTCT-GG
1 TTTCAG-GTTTCAGGTTTCAAGTTTCAAGTTT-TAGG
*
779443 TTTTAGGTTT
1 TTTCAGGTTT
779453 TAAATTTTGG
Statistics
Matches: 194, Mismatches: 49, Indels: 24
0.73 0.18 0.09
Matches are distributed among these distances:
34 10 0.05
35 176 0.91
36 6 0.03
37 2 0.01
ACGTcount: A:0.16, C:0.11, G:0.26, T:0.48
Consensus pattern (35 bp):
TTTCAGGTTTCAGGTTTCAAGTTTCAAGTTTTAGG
Found at i:779228 original size:56 final size:56
Alignment explanation
Indices: 779135--779525 Score: 229
Period size: 56 Copynumber: 6.7 Consensus size: 56
779125 AGGTTTTGAG
* * * *
779135 TTTTGGGTTTCAGGTTTTGGTTTTCAAATTTCGGGTTTCAGGTTTCAAGTTTCAAA
1 TTTTAGGTTTCAGGTTTCGGGTTTCAAATTTCGGGTTTCAGGTTTCAGGTTTCAAA
** * ** * *
779191 TTTTAGGTTTCAGGTTTCGGGTTTCAAATTTTAGGTTTTAGGTTTTTGGTTTCGAG
1 TTTTAGGTTTCAGGTTTCGGGTTTCAAATTTCGGGTTTCAGGTTTCAGGTTTCAAA
* * ** * *
779247 TTTCAAGTTTC-GAGTTTCGGGTTTTGAGTTTCGGGTTTCAAATTTCGGGTTTC-GAATTTCAAA
1 TTTTAGGTTTCAG-GTTTCGGGTTTCAAATTTCGGGTTTC--A-----GGTTTCAG-GTTTCAAA
** * ** *
779310 TTTTAGGTTTCAGGTTTCGGGTTT-GGATATTCAGGTTTTGGGTTTCTGGTTTCAAA
1 TTTTAGGTTTCAGGTTTCGGGTTTCAAAT-TTCGGGTTTCAGGTTTCAGGTTTCAAA
*
779366 TTTTTGGTTTCAGGTTTCAGGATTCGGGTTTCAAATTTCGGGTTTC-GAGTTTCAGGTTTCAAA
1 ----T--TTT-AGGTTTCAGGTTTCGGGTTTCAAATTTCGGGTTTCAG-GTTTCAGGTTTCAAA
* * ** * * *
779429 -TTTCGAGTTTCTGGTTTTAGGTTTTAAATTTTGGGGTTT-AGGATTT-AGGTTCCAAA
1 TTTTAG-GTTTCAGGTTTCGGGTTTCAAA-TTTCGGGTTTCAGG-TTTCAGGTTTCAAA
* ** *
779485 TTTTAGGTTTCGGGTTTCATGTTTAAAATTTCGGGTTTCAG
1 TTTTAGGTTTCAGGTTTCGGGTTTCAAATTTCGGGTTTCAG
779526 TTTTTGGTGA
Statistics
Matches: 257, Mismatches: 51, Indels: 54
0.71 0.14 0.15
Matches are distributed among these distances:
55 11 0.04
56 137 0.53
57 18 0.07
58 1 0.00
60 1 0.00
62 7 0.03
63 79 0.31
64 3 0.01
ACGTcount: A:0.17, C:0.10, G:0.25, T:0.48
Consensus pattern (56 bp):
TTTTAGGTTTCAGGTTTCGGGTTTCAAATTTCGGGTTTCAGGTTTCAGGTTTCAAA
Found at i:779332 original size:14 final size:14
Alignment explanation
Indices: 779260--779445 Score: 65
Period size: 14 Copynumber: 13.3 Consensus size: 14
779250 CAAGTTTCGA
*
779260 GTTTCGGGTTT-TG
1 GTTTCGGGTTTCAG
*
779273 AGTTTCGGGTTTCAA
1 -GTTTCGGGTTTCAG
*
779288 ATTTCGGGTTTC-G
1 GTTTCGGGTTTCAG
* *** *
779301 AATTTCAAATTTTAG
1 -GTTTCGGGTTTCAG
* *
779316 GTTTCAGGTTTCGG
1 GTTTCGGGTTTCAG
*
779330 GTTT-GGATATTCAG
1 GTTTCGGGT-TTCAG
* *
779344 GTTTTGGGTTTCTG
1 GTTTCGGGTTTCAG
*** **
779358 GTTTCAAATTTTTG
1 GTTTCGGGTTTCAG
*
779372 GTTTCAGGTTTCAG
1 GTTTCGGGTTTCAG
* *
779386 GATTCGGGTTTCAA
1 GTTTCGGGTTTCAG
*
779400 ATTTCGGGTTTC-G
1 GTTTCGGGTTTCAG
* *
779413 AGTTTCAGGTTTCAA
1 -GTTTCGGGTTTCAG
* * *
779428 ATTTCGAGTTTCTG
1 GTTTCGGGTTTCAG
779442 GTTT
1 GTTT
779446 TAGGTTTTAA
Statistics
Matches: 123, Mismatches: 42, Indels: 14
0.69 0.23 0.08
Matches are distributed among these distances:
13 2 0.02
14 117 0.95
15 4 0.03
ACGTcount: A:0.16, C:0.11, G:0.26, T:0.47
Consensus pattern (14 bp):
GTTTCGGGTTTCAG
Found at i:779554 original size:14 final size:14
Alignment explanation
Indices: 779537--779697 Score: 97
Period size: 14 Copynumber: 11.0 Consensus size: 14
779527 TTTTGGTGAC
*
779537 GGGTTTTAGGTTTT
1 GGGTTTTAAGTTTT
*
779551 GGGTTTCAAGTTTT
1 GGGTTTTAAGTTTT
779565 GGGTTTTAAGTTTT
1 GGGTTTTAAGTTTT
* *
779579 GGGTTTCAAATTTAT
1 GGGTTTTAAGTTT-T
*
779594 GGTTTTTAGTTTCGAGTTTT
1 GGGTTTTA------AGTTTT
* *
779614 GGGTTTCAAATTTT
1 GGGTTTTAAGTTTT
* * *
779628 TGGTTTTAGGTTTG
1 GGGTTTTAAGTTTT
779642 GGGTTTTAAGTTTT
1 GGGTTTTAAGTTTT
*** *
779656 AAATTTTAGGTTTT
1 GGGTTTTAAGTTTT
* * *
779670 AGGTTTTAGGTTTC
1 GGGTTTTAAGTTTT
*
779684 GGGTTTCAAGTTTT
1 GGGTTTTAAGTTTT
779698 AATTTTCGGG
Statistics
Matches: 110, Mismatches: 30, Indels: 14
0.71 0.19 0.09
Matches are distributed among these distances:
14 92 0.84
15 7 0.06
20 7 0.06
21 4 0.04
ACGTcount: A:0.16, C:0.04, G:0.27, T:0.54
Consensus pattern (14 bp):
GGGTTTTAAGTTTT
Found at i:779578 original size:35 final size:34
Alignment explanation
Indices: 779539--779697 Score: 116
Period size: 35 Copynumber: 4.8 Consensus size: 34
779529 TTGGTGACGG
*
779539 GTTTTAGGTTTTGGGTTTCAAGTTTTGG------
1 GTTTTAGGTTTTGGGTTTCAAATTTTGGTTTTAA
* *
779567 GTTTTAAGTTTTGGGTTTCAAATTTATGGTTTTTA
1 GTTTTAGGTTTTGGGTTTCAAATTT-TGGTTTTAA
* *
779602 G-TTTCGAGTTTTGGGTTTCAAATTTTTGGTTTTAG
1 GTTTTAG-GTTTTGGGTTTCAAA-TTTTGGTTTTAA
** ** * *
779637 GTTTGGGGTTTTAAGTTTTAAATTTTAGGTTTTAG
1 GTTTTAGGTTTTGGGTTTCAAATTTT-GGTTTTAA
* *
779672 GTTTTAGGTTTCGGGTTTCAAGTTTT
1 GTTTTAGGTTTTGGGTTTCAAATTTT
779698 AATTTTCGGG
Statistics
Matches: 102, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
28 23 0.23
29 3 0.03
34 7 0.07
35 63 0.62
36 6 0.06
ACGTcount: A:0.16, C:0.04, G:0.26, T:0.55
Consensus pattern (34 bp):
GTTTTAGGTTTTGGGTTTCAAATTTTGGTTTTAA
Found at i:779634 original size:7 final size:7
Alignment explanation
Indices: 779624--779682 Score: 64
Period size: 7 Copynumber: 8.4 Consensus size: 7
779614 GGGTTTCAAA
*
779624 TTTTTGG
1 TTTTAGG
779631 TTTTAGG
1 TTTTAGG
**
779638 TTTGGGG
1 TTTTAGG
*
779645 TTTTAAG
1 TTTTAGG
**
779652 TTTTAAA
1 TTTTAGG
779659 TTTTAGG
1 TTTTAGG
779666 TTTTAGG
1 TTTTAGG
779673 TTTTAGG
1 TTTTAGG
779680 TTT
1 TTT
779683 CGGGTTTCAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.15, C:0.00, G:0.25, T:0.59
Consensus pattern (7 bp):
TTTTAGG
Found at i:779648 original size:21 final size:21
Alignment explanation
Indices: 779624--779710 Score: 75
Period size: 21 Copynumber: 4.1 Consensus size: 21
779614 GGGTTTCAAA
* *
779624 TTTTTGGTTTTAGGTTTGGGG
1 TTTTAGGTTTTAGGTTTCGGG
* ** **
779645 TTTTAAGTTTTAAATTTTAGG
1 TTTTAGGTTTTAGGTTTCGGG
779666 TTTTAGGTTTTAGGTTTCGGG
1 TTTTAGGTTTTAGGTTTCGGG
* * **
779687 TTTCAAGTTTTAATTTTCGGG
1 TTTTAGGTTTTAGGTTTCGGG
779708 TTT
1 TTT
779711 AAAATTTTGA
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.15, C:0.03, G:0.25, T:0.56
Consensus pattern (21 bp):
TTTTAGGTTTTAGGTTTCGGG
Found at i:779698 original size:35 final size:35
Alignment explanation
Indices: 779560--779698 Score: 131
Period size: 35 Copynumber: 4.0 Consensus size: 35
779550 TGGGTTTCAA
* *
779560 GTTTTGGGTTTTAAGTTTTGGGTTTCAAA-TTTATG
1 GTTTTAGGTTTTAGGTTTTGGGTTTCAAATTTTA-G
* *
779595 GTTTTTA-G-TTTCGAGTTTTGGGTTTCAAATTTTTG
1 G-TTTTAGGTTTTAG-GTTTTGGGTTTCAAATTTTAG
** ** *
779630 GTTTTAGGTTTGGGGTTTTAAGTTTTAAATTTTAG
1 GTTTTAGGTTTTAGGTTTTGGGTTTCAAATTTTAG
* *
779665 GTTTTAGGTTTTAGGTTTCGGGTTTCAAGTTTTA
1 GTTTTAGGTTTTAGGTTTTGGGTTTCAAATTTTA
779699 ATTTTCGGGT
Statistics
Matches: 82, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
34 8 0.10
35 64 0.78
36 10 0.12
ACGTcount: A:0.17, C:0.04, G:0.25, T:0.55
Consensus pattern (35 bp):
GTTTTAGGTTTTAGGTTTTGGGTTTCAAATTTTAG
Found at i:779810 original size:28 final size:28
Alignment explanation
Indices: 779779--779851 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
779769 GACTTTTAAT
*
779779 TTTTGGGTTTTTGGTTTAAGGTTTCAAA
1 TTTTGGGTTTTTGGTTTAAGGATTCAAA
* **
779807 TTTT-AGTTTTCTGGTTTCGGGATTCAAA
1 TTTTGGGTTTT-TGGTTTAAGGATTCAAA
* *
779835 TTTTGGATTTTGGGTTT
1 TTTTGGGTTTTTGGTTT
779852 TGAGTTTTGG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
27 5 0.14
28 27 0.75
29 4 0.11
ACGTcount: A:0.15, C:0.05, G:0.25, T:0.55
Consensus pattern (28 bp):
TTTTGGGTTTTTGGTTTAAGGATTCAAA
Found at i:779859 original size:21 final size:20
Alignment explanation
Indices: 779835--779903 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
779825 GGGATTCAAA
*
779835 TTTTGGATTTTGGGTTTTGAG
1 TTTTGGATTTAGGGTTTT-AG
* * *
779856 TTTTGG-TTTCGGGTTTCAAA
1 TTTTGGATTTAGGGTTT-TAG
*
779876 TTTTGGGTTTAGGGTTTTAGG
1 TTTTGGATTTAGGGTTTTA-G
779897 TTTTGGA
1 TTTTGGA
779904 CTTCAAATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
20 17 0.45
21 21 0.55
ACGTcount: A:0.12, C:0.03, G:0.32, T:0.54
Consensus pattern (20 bp):
TTTTGGATTTAGGGTTTTAG
Found at i:779909 original size:35 final size:34
Alignment explanation
Indices: 779841--779937 Score: 115
Period size: 35 Copynumber: 2.8 Consensus size: 34
779831 CAAATTTTGG
* * * **
779841 ATTTTGGGTTTTGAGTTTTGGTTTCGGGTTTCAA
1 ATTTTGGGTTTAGGGTTTTGGTTTTGGACTTCAA
779875 ATTTTGGGTTTAGGGTTTTAGGTTTTGGACTTCAA
1 ATTTTGGGTTTAGGGTTTT-GGTTTTGGACTTCAA
779910 ATTTTGGGTTTCA-GGTTTTGGGTTTTGG
1 ATTTTGGGTTT-AGGGTTTT-GGTTTTGG
779938 GTTTTAGGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
34 17 0.31
35 37 0.67
36 1 0.02
ACGTcount: A:0.12, C:0.05, G:0.31, T:0.52
Consensus pattern (34 bp):
ATTTTGGGTTTAGGGTTTTGGTTTTGGACTTCAA
Found at i:779940 original size:14 final size:14
Alignment explanation
Indices: 779835--779948 Score: 59
Period size: 14 Copynumber: 8.2 Consensus size: 14
779825 GGGATTCAAA
*
779835 TTTTGGATTTTGGG
1 TTTTGGGTTTTGGG
*
779849 TTTTGAGTTTT-GG
1 TTTTGGGTTTTGGG
* ****
779862 TTTCGGGTTTCAAA
1 TTTTGGGTTTTGGG
*
779876 TTTTGGGTTTAGGG
1 TTTTGGGTTTTGGG
* *
779890 TTTTAGGTTTTGGA
1 TTTTGGGTTTTGGG
* ****
779904 CTTCAAATTTTGGG
1 TTTTGGGTTTTGGG
**
779918 TTTCAGGTTTTGGG
1 TTTTGGGTTTTGGG
*
779932 TTTTGGGTTTTAGG
1 TTTTGGGTTTTGGG
779946 TTT
1 TTT
779949 CAAATTTTAG
Statistics
Matches: 73, Mismatches: 26, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
13 10 0.14
14 63 0.86
ACGTcount: A:0.11, C:0.04, G:0.31, T:0.54
Consensus pattern (14 bp):
TTTTGGGTTTTGGG
Found at i:779947 original size:28 final size:28
Alignment explanation
Indices: 779918--780006 Score: 97
Period size: 28 Copynumber: 3.2 Consensus size: 28
779908 AAATTTTGGG
*
779918 TTTCAGGTTTTGGGTTTTGGGTTTTAGG
1 TTTCAGGTTTTGGGTTTTGGGTTTTAGA
** * * *
779946 TTTCAAATTTTAGTTTTTGGGTTTTAAA
1 TTTCAGGTTTTGGGTTTTGGGTTTTAGA
* * *
779974 TTTCGGGTTATGGGTTTTGTGTTTTAGA
1 TTTCAGGTTTTGGGTTTTGGGTTTTAGA
780002 TTTCA
1 TTTCA
780007 AATTTCAAGT
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.15, C:0.04, G:0.26, T:0.55
Consensus pattern (28 bp):
TTTCAGGTTTTGGGTTTTGGGTTTTAGA
Found at i:779956 original size:21 final size:21
Alignment explanation
Indices: 779905--779982 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 21
779895 GGTTTTGGAC
*
779905 TTCAAATTTTGGGTTTCAGGT
1 TTCAAATTTTGGGTTTTAGGT
****
779926 TTTGGGTTTTGGGTTTTAGGT
1 TTCAAATTTTGGGTTTTAGGT
* * *
779947 TTCAAATTTTAGTTTTTGGGT
1 TTCAAATTTTGGGTTTTAGGT
* *
779968 TTTAAATTTCGGGTT
1 TTCAAATTTTGGGTT
779983 ATGGGTTTTG
Statistics
Matches: 41, Mismatches: 16, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.15, C:0.05, G:0.26, T:0.54
Consensus pattern (21 bp):
TTCAAATTTTGGGTTTTAGGT
Found at i:779982 original size:49 final size:49
Alignment explanation
Indices: 779866--780040 Score: 143
Period size: 49 Copynumber: 3.4 Consensus size: 49
779856 TTTTGGTTTC
* ***
779866 GGGTTTCAAATTTTGGGTTTAGGGTTTTAGGTTTTGGACTTCAAATTTT
1 GGGTTTCAAATTTTGGGTTTTGGGTTTTAGGTTTCAAACTTCAAATTTT
** * * **
779915 GGGTTTCAGGTTTTGGGTTTTGGGTTTTAGGTTTCAAATTTTAGTTTTT
1 GGGTTTCAAATTTTGGGTTTTGGGTTTTAGGTTTCAAACTTCAAATTTT
* * * * *
779964 GGGTTTTAAATTTCGGGTTATGGGTTTTGTGTTTTAGATTTCAAATTTCAAGTTTT
1 GGGTTTCAAA--T----TT-TGGGTTTTGGGTTTTAGGTTTCAAACTTCAAATTTT
*
780020 GGGTTTCAAATGTTGGGTTTT
1 GGGTTTCAAATTTTGGGTTTT
780041 AAAATTTTAG
Statistics
Matches: 99, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
49 54 0.55
50 1 0.01
51 1 0.01
54 1 0.01
55 2 0.02
56 40 0.40
ACGTcount: A:0.17, C:0.05, G:0.27, T:0.51
Consensus pattern (49 bp):
GGGTTTCAAATTTTGGGTTTTGGGTTTTAGGTTTCAAACTTCAAATTTT
Found at i:779988 original size:56 final size:56
Alignment explanation
Indices: 779918--780038 Score: 156
Period size: 56 Copynumber: 2.2 Consensus size: 56
779908 AAATTTTGGG
* * * * *
779918 TTTCAGGTTTTGGGTTTTGGGTTTTAGGTTTCAAATTT-TAGTTTTTGGGTTTTAAA
1 TTTCGGGTTATGGGTTTTGGGTTTTAGATTTCAAATTTCAAG-TTTTGGGTTTCAAA
*
779974 TTTCGGGTTATGGGTTTTGTGTTTTAGATTTCAAATTTCAAGTTTTGGGTTTCAAA
1 TTTCGGGTTATGGGTTTTGGGTTTTAGATTTCAAATTTCAAGTTTTGGGTTTCAAA
780030 TGTT-GGGTT
1 T-TTCGGGTT
780039 TTAAAATTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
56 53 0.93
57 4 0.07
ACGTcount: A:0.17, C:0.05, G:0.26, T:0.53
Consensus pattern (56 bp):
TTTCGGGTTATGGGTTTTGGGTTTTAGATTTCAAATTTCAAGTTTTGGGTTTCAAA
Found at i:780055 original size:36 final size:36
Alignment explanation
Indices: 780006--780075 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
779996 TTTAGATTTC
*
780006 AAATTTCAAGTTTTGGGTTTCAAATGTTGGGTTTTA
1 AAATTTCAAGTTTTGAGTTTCAAATGTTGGGTTTTA
* * ** *
780042 AAATTTTAGGTTTTGAGTTTTGAATTTTGGGTTT
1 AAATTTCAAGTTTTGAGTTTCAAATGTTGGGTTT
780076 GGGGTTTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.51
Consensus pattern (36 bp):
AAATTTCAAGTTTTGAGTTTCAAATGTTGGGTTTTA
Found at i:780082 original size:21 final size:22
Alignment explanation
Indices: 780034--780082 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
780024 TTCAAATGTT
*
780034 GGGTTTTAAAATTTTAGGTTTT
1 GGGTTTTAAAATTTTAGGTTTG
* * *
780056 GAGTTTT-GAATTTTGGGTTTG
1 GGGTTTTAAAATTTTAGGTTTG
780077 GGGTTT
1 GGGTTT
780083 AATGTTTCAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (22 bp):
GGGTTTTAAAATTTTAGGTTTG
Found at i:780122 original size:21 final size:20
Alignment explanation
Indices: 780098--780159 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 20
780088 TTCAAATTTT
780098 AGGTTATGGGTTTTGGGTTTC
1 AGGTT-TGGGTTTTGGGTTTC
* * *
780119 AGGTTTCGTGTTTCGGTTTTC
1 AGGTTT-GGGTTTTGGGTTTC
**
780140 AAATTTTGGGTTTTGGGTTT
1 -AGGTTTGGGTTTTGGGTTT
780160 TAAGTTTCAA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
20 1 0.03
21 26 0.84
22 4 0.13
ACGTcount: A:0.10, C:0.06, G:0.32, T:0.52
Consensus pattern (20 bp):
AGGTTTGGGTTTTGGGTTTC
Found at i:780124 original size:49 final size:49
Alignment explanation
Indices: 780035--780180 Score: 134
Period size: 49 Copynumber: 3.0 Consensus size: 49
780025 TCAAATGTTG
* * ** *
780035 GGTTTTAAAATTTTAGGTTTTGAGTTTTGAATTTTGGGTTTGGGGTTTA
1 GGTTTTCAAATTTTAGGTTTTGGGTTTTGAATTTCAGGTTTCGGGTTTA
* * ** * *
780084 -ATGTTTCAAATTTTAGGTTATGGGTTTTGGGTTTCAGGTTTCGTGTTTC
1 GGT-TTTCAAATTTTAGGTTTTGGGTTTTGAATTTCAGGTTTCGGGTTTA
* **
780133 GGTTTTCAAATTTTGGGTTTTGGGTTTT-AAGTTTCAAATTTCGGGTTT
1 GGTTTTCAAATTTTAGGTTTTGGGTTTTGAA-TTTCAGGTTTCGGGTTT
780181 TAAATTTCAG
Statistics
Matches: 75, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
48 1 0.01
49 73 0.97
50 1 0.01
ACGTcount: A:0.16, C:0.05, G:0.27, T:0.52
Consensus pattern (49 bp):
GGTTTTCAAATTTTAGGTTTTGGGTTTTGAATTTCAGGTTTCGGGTTTA
Found at i:780175 original size:42 final size:42
Alignment explanation
Indices: 780104--780187 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
780094 TTTTAGGTTA
* ***
780104 TGGGTTTTGGGTTTCAGGTTTCGTGTTTC-GGTTTTCAAATTT
1 TGGGTTTTGGGTTTCAAGTTTCAAATTTCGGGTTTT-AAATTT
*
780146 TGGGTTTTGGGTTTTAAGTTTCAAATTTCGGGTTTTAAATTT
1 TGGGTTTTGGGTTTCAAGTTTCAAATTTCGGGTTTTAAATTT
780188 CAGGTTTCAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 30 0.83
43 6 0.17
ACGTcount: A:0.14, C:0.07, G:0.26, T:0.52
Consensus pattern (42 bp):
TGGGTTTTGGGTTTCAAGTTTCAAATTTCGGGTTTTAAATTT
Found at i:780180 original size:14 final size:14
Alignment explanation
Indices: 780163--780279 Score: 59
Period size: 14 Copynumber: 8.9 Consensus size: 14
780153 TGGGTTTTAA
780163 GTTTCAAATTTCGG
1 GTTTCAAATTTCGG
* *
780177 GTTTTAAATTTCAG
1 GTTTCAAATTTCGG
**
780191 GTTTCAGGTTTCGG
1 GTTTCAAATTTCGG
780205 GTTTC-----T--G
1 GTTTCAAATTTCGG
* * **
780212 GTTTCGAGTTTCAA
1 GTTTCAAATTTCGG
*
780226 GTTTCACATTTCGG
1 GTTTCAAATTTCGG
* * *
780240 GTTTCGAGTTTCGA
1 GTTTCAAATTTCGG
*
780254 GTTTCAAATTTTGG
1 GTTTCAAATTTCGG
*
780268 GTTTCGAATTTC
1 GTTTCAAATTTC
780280 AAATTTCAGG
Statistics
Matches: 74, Mismatches: 22, Indels: 14
0.67 0.20 0.13
Matches are distributed among these distances:
7 6 0.08
9 1 0.01
12 1 0.01
14 66 0.89
ACGTcount: A:0.17, C:0.14, G:0.23, T:0.46
Consensus pattern (14 bp):
GTTTCAAATTTCGG
Found at i:780180 original size:21 final size:21
Alignment explanation
Indices: 780154--780251 Score: 79
Period size: 21 Copynumber: 4.7 Consensus size: 21
780144 TTTGGGTTTT
* *
780154 GGGTTTTAAGTTTCAAATTTC
1 GGGTTTCAAGTTTCAGATTTC
* * *
780175 GGGTTTTAAATTTCAGGTTTC
1 GGGTTTCAAGTTTCAGATTTC
* ** * *
780196 AGGTTTCGGGTTTCTGGTTTC
1 GGGTTTCAAGTTTCAGATTTC
* *
780217 GAGTTTCAAGTTTCACATTTC
1 GGGTTTCAAGTTTCAGATTTC
*
780238 GGGTTTCGAGTTTC
1 GGGTTTCAAGTTTC
780252 GAGTTTCAAA
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.16, C:0.13, G:0.24, T:0.46
Consensus pattern (21 bp):
GGGTTTCAAGTTTCAGATTTC
Found at i:780197 original size:7 final size:7
Alignment explanation
Indices: 780185--780231 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
780175 GGGTTTTAAA
780185 TTTCAGG
1 TTTCAGG
780192 TTTCAGG
1 TTTCAGG
*
780199 TTTCGGG
1 TTTCAGG
*
780206 TTTCTGG
1 TTTCAGG
780213 TTTC-GAG
1 TTTCAG-G
*
780220 TTTCAAG
1 TTTCAGG
780227 TTTCA
1 TTTCA
780232 CATTTCGGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
6 1 0.03
7 34 0.97
ACGTcount: A:0.13, C:0.15, G:0.26, T:0.47
Consensus pattern (7 bp):
TTTCAGG
Found at i:780244 original size:7 final size:7
Alignment explanation
Indices: 780198--780258 Score: 54
Period size: 7 Copynumber: 8.7 Consensus size: 7
780188 CAGGTTTCAG
*
780198 GTTTCGG
1 GTTTCGA
780205 GTTTCTG-
1 GTTTC-GA
780212 GTTTCGA
1 GTTTCGA
*
780219 GTTTCAA
1 GTTTCGA
780226 GTTTC-A
1 GTTTCGA
* *
780232 CATTTCGG
1 -GTTTCGA
780240 GTTTCGA
1 GTTTCGA
780247 GTTTCGA
1 GTTTCGA
780254 GTTTC
1 GTTTC
780259 AAATTTTGGG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
6 2 0.04
7 42 0.93
8 1 0.02
ACGTcount: A:0.11, C:0.16, G:0.26, T:0.46
Consensus pattern (7 bp):
GTTTCGA
Found at i:780271 original size:21 final size:21
Alignment explanation
Indices: 780247--780300 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
780237 CGGGTTTCGA
**
780247 GTTTCGAGTTTCAAATTTTGG
1 GTTTCGAGTTTCAAATTTCAG
*
780268 GTTTCGAATTTCAAATTTCAG
1 GTTTCGAGTTTCAAATTTCAG
*
780289 GTTTCGGGTTTC
1 GTTTCGAGTTTC
780301 TTGTTTCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.19, C:0.13, G:0.22, T:0.46
Consensus pattern (21 bp):
GTTTCGAGTTTCAAATTTCAG
Found at i:780300 original size:28 final size:28
Alignment explanation
Indices: 780115--780313 Score: 132
Period size: 28 Copynumber: 7.1 Consensus size: 28
780105 GGGTTTTGGG
*
780115 TTTCAGGTTTCGTGTTTCG-GTTTTCAAA
1 TTTCAGGTTTCGGGTTTCGAG-TTTCAAA
** * **
780143 TTTTGGGTTTTGGGTTTTAAGTTTCAAA
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
* **** **
780171 TTTCGGGTTTTAAATTTC-AGGTTTCAGG
1 TTTCAGGTTTCGGGTTTCGA-GTTTCAAA
* * *
780199 TTTCGGGTTTCTGGTTTCGAGTTTCAAG
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
** * *
780227 TTTCACATTTCGGGTTTCGAGTTTCGAG
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
** * *
780255 TTTCAAATTTTGGGTTTCGAATTTCAAA
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
**
780283 TTTCAGGTTTCGGGTTTCTTGTTTCAAA
1 TTTCAGGTTTCGGGTTTCGAGTTTCAAA
780311 TTT
1 TTT
780314 TGAGTTTTTG
Statistics
Matches: 134, Mismatches: 34, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
27 1 0.01
28 131 0.98
29 2 0.01
ACGTcount: A:0.17, C:0.12, G:0.23, T:0.49
Consensus pattern (28 bp):
TTTCAGGTTTCGGGTTTCGAGTTTCAAA
Found at i:780383 original size:7 final size:7
Alignment explanation
Indices: 780373--780453 Score: 56
Period size: 7 Copynumber: 11.6 Consensus size: 7
780363 TGGGTTCCAA
*
780373 TTTCTGG
1 TTTCAGG
780380 TTTCAGG
1 TTTCAGG
**
780387 TTTCAAA
1 TTTCAGG
**
780394 TTTTGGG
1 TTTCAGG
*
780401 TTTCAGT
1 TTTCAGG
780408 TTTCAGG
1 TTTCAGG
780415 TTTCTA-G
1 TTTC-AGG
780422 TTTCAGG
1 TTTCAGG
**
780429 TTTCAAA
1 TTTCAGG
*
780436 TTTCGGG
1 TTTCAGG
*
780443 TTTCGGG
1 TTTCAGG
780450 TTTC
1 TTTC
780454 GACTTTCAAA
Statistics
Matches: 56, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
6 1 0.02
7 54 0.96
8 1 0.02
ACGTcount: A:0.14, C:0.14, G:0.23, T:0.49
Consensus pattern (7 bp):
TTTCAGG
Found at i:780402 original size:14 final size:14
Alignment explanation
Indices: 780380--780474 Score: 64
Period size: 14 Copynumber: 6.8 Consensus size: 14
780370 CAATTTCTGG
*
780380 TTTCAGGTTTCAAA
1 TTTCGGGTTTCAAA
* **
780394 TTTTGGGTTTCAGT
1 TTTCGGGTTTCAAA
* * *
780408 TTTCAGGTTTCTAG
1 TTTCGGGTTTCAAA
*
780422 TTTCAGGTTTCAAA
1 TTTCGGGTTTCAAA
***
780436 TTTCGGGTTTCGGG
1 TTTCGGGTTTCAAA
**
780450 TTTCGACTTTCAAA
1 TTTCGGGTTTCAAA
*
780464 TTTTGGGTTTC
1 TTTCGGGTTTC
780475 GGGTTTCAAA
Statistics
Matches: 58, Mismatches: 23, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
14 58 1.00
ACGTcount: A:0.16, C:0.14, G:0.22, T:0.48
Consensus pattern (14 bp):
TTTCGGGTTTCAAA
Found at i:780402 original size:21 final size:21
Alignment explanation
Indices: 780378--780549 Score: 96
Period size: 21 Copynumber: 7.9 Consensus size: 21
780368 TCCAATTTCT
780378 GGTTTCAGGTTTCAAATTTTG
1 GGTTTCAGGTTTCAAATTTTG
* **
780399 GGTTTCAGTTTTCAGGTTTCT-
1 GGTTTCAGGTTTCAAATTT-TG
* *
780420 AGTTTCAGGTTTCAAATTTCG
1 GGTTTCAGGTTTCAAATTTTG
*
780441 GGTTTCGGGTTTCGACTTTCAAATTTTG
1 GGTTTC-AG----G--TTTCAAATTTTG
*
780469 GGTTTCGGGTTTCAAATTTTG
1 GGTTTCAGGTTTCAAATTTTG
** * * * *
780490 ATTTTCTGATTTCGAGTTTTG
1 GGTTTCAGGTTTCAAATTTTG
* ** *
780511 GGTTTCTGGTTTTGAATTTAG
1 GGTTTCAGGTTTCAAATTTTG
780532 GGTTTCTA-GTTTCAAATT
1 GGTTTC-AGGTTTCAAATT
780550 ACAAATTTCA
Statistics
Matches: 115, Mismatches: 26, Indels: 20
0.71 0.16 0.12
Matches are distributed among these distances:
21 92 0.80
22 2 0.02
23 1 0.01
26 1 0.01
27 2 0.02
28 17 0.15
ACGTcount: A:0.16, C:0.11, G:0.23, T:0.49
Consensus pattern (21 bp):
GGTTTCAGGTTTCAAATTTTG
Found at i:780452 original size:28 final size:29
Alignment explanation
Indices: 780421--780482 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
780411 CAGGTTTCTA
*
780421 GTTTCAG-GTTTCAAATTTCGGGTTTCGG
1 GTTTCAGACTTTCAAATTTCGGGTTTCGG
*
780449 GTTTC-GACTTTCAAATTTTGGGTTTCGG
1 GTTTCAGACTTTCAAATTTCGGGTTTCGG
780477 GTTTCA
1 GTTTCA
780483 AATTTTGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 1 0.03
28 29 0.97
ACGTcount: A:0.15, C:0.15, G:0.26, T:0.45
Consensus pattern (29 bp):
GTTTCAGACTTTCAAATTTCGGGTTTCGG
Found at i:780661 original size:21 final size:21
Alignment explanation
Indices: 780637--780676 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
780627 GGGTTTTGGG
*
780637 TTTTGAGTTTCTGGTTTCAAA
1 TTTTGAGTTTCGGGTTTCAAA
*
780658 TTTTGGGTTTCGGGTTTCA
1 TTTTGAGTTTCGGGTTTCA
780677 GTTTTCAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.10, G:0.25, T:0.53
Consensus pattern (21 bp):
TTTTGAGTTTCGGGTTTCAAA
Found at i:780661 original size:28 final size:28
Alignment explanation
Indices: 780630--780696 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
780620 AAATTTTGGG
*
780630 TTTTGGGTTTTGAGTTTCTGGTTTCAAA
1 TTTTGGGTTTTGAGTTTCAGGTTTCAAA
* * * *
780658 TTTTGGGTTTCGGGTTTCAGTTTTCAAG
1 TTTTGGGTTTTGAGTTTCAGGTTTCAAA
780686 TTTTGGGTTTT
1 TTTTGGGTTTT
780697 CAGGTTTCGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.10, C:0.07, G:0.27, T:0.55
Consensus pattern (28 bp):
TTTTGGGTTTTGAGTTTCAGGTTTCAAA
Found at i:780704 original size:22 final size:21
Alignment explanation
Indices: 780664--780704 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
780654 CAAATTTTGG
*
780664 GTTTCGGGTTTCAGTTTTCAA
1 GTTTCGGGTTTCAGGTTTCAA
*
780685 GTTTTGGGTTTTCAGGTTTC
1 GTTTCGGG-TTTCAGGTTTC
780705 GATTTTAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.10, C:0.12, G:0.27, T:0.51
Consensus pattern (21 bp):
GTTTCGGGTTTCAGGTTTCAA
Found at i:780710 original size:21 final size:22
Alignment explanation
Indices: 780672--780759 Score: 58
Period size: 21 Copynumber: 4.1 Consensus size: 22
780662 GGGTTTCGGG
* * *
780672 TTTCAGTTTTCAAGTTTTGGGT
1 TTTCAGGTTTCGAGTTTTAGGT
780694 TTTCAGGTTTCGA-TTTTAGG-
1 TTTCAGGTTTCGAGTTTTAGGT
** *
780714 TTTCAAATTT-TAGGTTTTAGGT
1 TTTCAGGTTTCGA-GTTTTAGGT
* * *
780736 TTT-AGGTTTTGATTTTTGGGT
1 TTTCAGGTTTCGAGTTTTAGGT
780757 TTT
1 TTT
780760 GTGGTTTAGG
Statistics
Matches: 51, Mismatches: 11, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
19 1 0.02
20 8 0.16
21 27 0.53
22 15 0.29
ACGTcount: A:0.15, C:0.06, G:0.23, T:0.57
Consensus pattern (22 bp):
TTTCAGGTTTCGAGTTTTAGGT
Found at i:780716 original size:28 final size:28
Alignment explanation
Indices: 780629--780716 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 28
780619 TAAATTTTGG
* * *
780629 GTTTTGGGTTTTGA-GTTTCTGGTTTCAA
1 GTTTTGGGTTTTCAGGTTTC-GATTTTAA
* *
780657 ATTTTGGG-TTTCGGGTTTC-AGTTTTCAA
1 GTTTTGGGTTTTCAGGTTTCGA-TTTT-AA
*
780685 GTTTTGGGTTTTCAGGTTTCGATTTTAG
1 GTTTTGGGTTTTCAGGTTTCGATTTTAA
780713 GTTT
1 GTTT
780717 CAAATTTTAG
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
27 6 0.13
28 26 0.55
29 14 0.30
30 1 0.02
ACGTcount: A:0.11, C:0.08, G:0.27, T:0.53
Consensus pattern (28 bp):
GTTTTGGGTTTTCAGGTTTCGATTTTAA
Found at i:780733 original size:7 final size:7
Alignment explanation
Indices: 780685--780793 Score: 55
Period size: 7 Copynumber: 15.6 Consensus size: 7
780675 CAGTTTTCAA
*
780685 GTTTTGG
1 GTTTTAG
780692 GTTTTCAG
1 GTTTT-AG
*
780700 G-TTTCG
1 GTTTTAG
*
780706 ATTTTAG
1 GTTTTAG
* *
780713 GTTTCAA
1 GTTTTAG
*
780720 ATTTTAG
1 GTTTTAG
780727 GTTTTAG
1 GTTTTAG
780734 GTTTTAG
1 GTTTTAG
780741 GTTTT-G
1 GTTTTAG
* *
780747 ATTTTTGG
1 -GTTTTAG
780755 GTTTT-G
1 GTTTTAG
*
780761 TGGTTTAG
1 -GTTTTAG
780769 GTTTT-G
1 GTTTTAG
*
780775 AGTTTTGG
1 -GTTTTAG
*
780783 GGTTTAG
1 GTTTTAG
780790 GTTT
1 GTTT
780794 GGGTTTCAAA
Statistics
Matches: 76, Mismatches: 18, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
6 4 0.05
7 67 0.88
8 5 0.07
ACGTcount: A:0.12, C:0.03, G:0.29, T:0.56
Consensus pattern (7 bp):
GTTTTAG
Found at i:780773 original size:21 final size:21
Alignment explanation
Indices: 780722--780799 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 21
780712 GGTTTCAAAT
* * *
780722 TTTAGGTTTTAGGTTTTAGGT
1 TTTAGGTTTTGGGTTTTGGGG
* *
780743 TTTGA-TTTTTGGGTTTTGTGG
1 TTT-AGGTTTTGGGTTTTGGGG
*
780764 TTTAGGTTTTGAGTTTTGGGG
1 TTTAGGTTTTGGGTTTTGGGG
780785 TTTAGG-TTTGGGTTT
1 TTTAGGTTTTGGGTTT
780800 CAAAGTTTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
20 9 0.20
21 36 0.78
22 1 0.02
ACGTcount: A:0.09, C:0.00, G:0.33, T:0.58
Consensus pattern (21 bp):
TTTAGGTTTTGGGTTTTGGGG
Done.