genome.fa.s5984.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005984.1 Hibiscus syriacus cultivar Beakdansim tig00014065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92282

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843--2421	83	7.0	83	74	9	425	42	11	30	16	1.83
1988--2331	162	2.1	164	81	6	387	42	12	29	15	1.83
1903--2422	245	2.1	248	88	3	784	42	12	30	15	1.84
8751--8955	35	5.9	35	79	11	226	46	2	5	44	1.42
8732--8962	72	3.3	72	86	8	302	45	2	5	45	1.40
8933--8993	26	2.3	26	85	0	86	44	1	4	49	1.33
8911--9035	65	2.0	62	84	7	162	43	2	6	48	1.41
9038--9109	25	3.0	24	80	11	67	19	1	4	75	1.05
9038--9102	11	5.9	10	72	24	51	21	1	3	73	1.05
9035--9102	20	3.2	20	79	20	68	20	1	2	75	1.02
10227--10293	16	4.1	16	71	21	50	20	5	0	73	1.04
11728--11771	21	2.1	21	91	0	70	31	22	22	22	1.98
11792--11833	21	2.0	21	85	0	57	26	23	26	23	2.00
11861--11904	19	2.3	19	92	0	70	38	13	9	38	1.77
21399--21484	3	29.3	3	88	4	131	34	2	0	62	1.08
28799--28849	20	2.5	20	100	0	102	39	31	15	13	1.87
31845--31904	29	2.1	29	83	0	75	65	8	13	13	1.48
33473--33558	3	28.7	3	82	13	106	62	0	1	36	1.03
33711--34086	129	2.9	129	96	0	680	24	19	30	25	1.98
33750--34092	46	7.9	45	76	13	306	23	20	30	25	1.98
34105--34167	28	2.2	28	86	5	83	44	12	14	28	1.82
34125--34200	28	2.6	28	82	14	93	46	11	15	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34202--34391	66	2.9	65	70	11	154	38	14	17	29	1.89
34426--34585	63	2.5	65	77	8	159	42	12	15	30	1.83
34588--34631	15	2.9	15	93	0	70	43	4	20	31	1.72
34727--34806	40	2.0	40	87	4	117	37	11	20	31	1.87
34788--34912	64	2.0	63	87	3	180	43	12	14	30	1.82
35080--35302	67	3.5	64	83	7	247	46	13	11	29	1.77
35154--35270	37	3.4	37	66	16	104	46	11	11	30	1.76
35258--35314	27	2.1	27	93	0	96	45	15	7	31	1.73
35301--35403	52	2.0	53	90	1	163	34	16	13	34	1.88
35399--35492	27	3.5	25	79	12	89	48	14	9	26	1.75
35735--35853	36	3.4	36	79	9	113	35	12	21	30	1.91
35769--35853	36	2.4	36	86	4	118	35	11	22	30	1.90
35805--36044	105	2.3	104	85	5	317	39	11	19	29	1.87
36011--36147	36	3.8	36	82	5	170	35	13	19	31	1.90
36011--36145	71	1.9	72	87	4	202	34	13	20	31	1.91
38431--38501	20	3.0	24	69	22	78	40	11	23	23	1.87
38418--38492	20	3.5	20	70	20	62	37	10	25	26	1.89
38428--38507	26	3.3	26	68	20	82	42	10	23	23	1.84
38416--38509	46	2.1	45	91	2	152	38	9	25	26	1.87
42902--42961	29	2.1	29	83	0	75	65	8	13	13	1.48
44532--44617	3	28.7	3	82	13	106	62	0	1	36	1.03
54633--54764	58	2.3	59	81	9	162	30	12	18	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57911--57949	20	2.0	21	85	10	55	28	0	30	41	1.57
59735--59779	13	3.6	12	82	8	54	53	2	26	17	1.56
62480--62520	22	2.0	20	90	9	64	29	4	0	65	1.13
62480--62526	6	7.2	6	82	17	58	29	4	0	65	1.11
62480--62530	28	1.9	26	88	11	77	31	3	0	64	1.11
62846--62890	22	2.0	22	100	0	90	40	24	4	31	1.75
68698--68737	18	2.2	18	95	0	71	40	30	5	25	1.77
73859--73986	58	2.2	58	79	5	141	31	16	17	35	1.92
74427--74474	24	2.0	24	88	8	71	43	6	12	37	1.68
74945--75003	25	2.5	24	78	15	68	38	22	16	22	1.93
75046--75085	16	2.5	16	83	0	53	50	15	12	22	1.77
75587--75659	29	2.5	29	84	4	94	42	21	17	17	1.89
75644--75723	29	2.8	29	82	3	90	36	15	22	26	1.93
76015--76091	30	2.5	30	85	2	100	49	5	14	31	1.65
81497--81521	13	1.9	13	100	0	50	60	16	0	24	1.36
90502--90781	135	2.1	134	85	4	377	30	17	23	28	1.97
90689--91305	111	5.6	111	84	7	772	31	17	24	27	1.97
90689--91305	332	1.9	333	85	6	876	31	17	24	27	1.97

Tables:   1

The End!