genome.fa.s5985.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005985.1 Hibiscus syriacus cultivar Beakdansim tig00014073_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84406

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3384--3578	29	6.8	28	80	10	157	32	4	7	55	1.47
3383--3553	58	2.9	57	82	4	209	32	3	7	56	1.44
3384--3545	29	5.6	29	83	5	168	32	3	8	56	1.46
3384--3545	86	1.9	86	85	5	229	32	3	8	56	1.46
3413--3622	29	7.4	28	73	15	108	33	4	7	54	1.49
22896--22930	17	2.1	17	88	0	52	11	34	28	25	1.91
34948--34979	12	2.7	12	95	0	55	18	46	18	15	1.84
41033--41062	14	2.1	14	93	0	51	36	6	33	23	1.81
44119--44176	21	2.8	21	86	0	71	13	31	36	18	1.90
48007--48087	39	2.1	39	85	2	108	38	14	22	24	1.92
48019--48097	39	2.0	39	92	0	131	40	12	21	25	1.88
48977--49013	19	1.9	19	94	0	65	35	8	21	35	1.83
48990--49138	74	2.0	74	100	0	298	44	8	14	32	1.75
53498--53646	74	2.0	74	100	0	298	44	8	14	32	1.75
57688--57730	22	1.9	23	95	4	79	23	18	4	53	1.63
60438--60481	18	2.4	18	96	0	79	15	27	2	54	1.53
62897--62984	45	2.0	45	95	4	160	25	15	25	34	1.95
64456--64521	23	3.0	22	77	16	73	42	12	7	37	1.71
64506--64535	15	2.0	15	93	0	51	20	16	10	53	1.71
65393--65559	84	2.0	84	97	0	316	31	21	13	32	1.92
67624--67729	35	3.1	34	91	4	178	47	10	0	42	1.38
67733--67780	23	2.1	22	92	3	78	54	16	0	29	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68532--68651	15	6.2	20	73	18	62	32	11	13	42	1.80
68580--68624	15	3.0	15	100	0	90	20	13	13	53	1.72
68971--69031	27	2.2	27	75	18	63	22	19	1	55	1.52
74725--74780	28	2.0	28	100	0	112	35	17	25	21	1.95
83331--83406	40	1.9	40	88	0	116	27	21	13	38	1.90
83343--83480	43	3.3	41	77	14	131	29	20	11	38	1.88

Tables:   1

The End!