Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005988.1 Hibiscus syriacus cultivar Beakdansim tig00014081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54821

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4399--4448
18
2.7
19
84
6
66
42
12
0
46
1.41
5183--5231
11
4.5
11
100
0
98
36
18
26
18
1.94
6490--6669
90
2.0
90
90
3
283
40
15
14
30
1.86
6663--6868
72
2.8
73
84
7
292
42
9
15
32
1.79
6663--6870
75
2.8
75
86
5
282
42
9
14
32
1.79
6789--6970
100
1.8
99
90
1
292
45
11
12
30
1.78
6730--7045
175
1.8
174
86
2
463
43
10
13
32
1.78
6580--7219
250
2.6
251
91
2
1021
42
11
13
32
1.80
6888--7121
76
3.1
76
86
1
353
44
11
13
30
1.79
7039--7332
98
3.0
100
88
2
439
43
11
12
32
1.78
10835--10923
3
29.7
3
93
0
151
34
2
0
62
1.07
11208--11268
30
2.0
30
93
0
104
32
27
18
21
1.96
16369--16429
30
2.0
30
90
6
97
29
22
19
27
1.98
27262--27316
26
2.1
26
96
0
101
38
3
9
49
1.52
27288--27472
74
2.5
75
82
8
209
43
5
9
41
1.61
27288--27471
37
4.9
37
78
13
175
43
5
9
41
1.61
27496--27551
26
2.2
25
90
3
85
37
3
8
50
1.51
27534--27645
17
6.8
16
75
16
88
34
0
0
64
1.00
27556--27645
10
9.0
11
71
17
54
35
0
0
64
0.94
27549--27635
30
3.0
30
78
11
108
34
0
0
65
0.93
27564--27637
25
2.8
28
72
13
77
32
0
0
67
0.91
28530--28585
19
2.9
19
85
12
78
16
21
28
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28530--28578
10
4.8
11
83
16
70
16
20
26
36
1.93
28531--28585
9
5.6
10
83
12
78
14
21
29
34
1.93
28598--28652
13
3.8
13
76
21
56
16
47
20
16
1.83
28606--28646
18
2.3
18
100
0
82
17
51
21
9
1.74
28660--28725
29
2.3
29
89
0
96
21
10
27
40
1.86
35288--35346
24
2.4
23
78
10
55
27
8
0
64
1.22
35273--35370
32
3.2
30
76
19
89
25
8
0
66
1.19
35368--35398
10
3.2
10
95
4
55
29
6
0
64
1.18
35407--35492
37
2.4
38
77
18
94
20
8
1
69
1.20
36544--36608
30
2.2
30
97
0
121
23
12
30
33
1.91
37382--37425
12
3.8
12
81
6
54
20
4
4
70
1.23
38201--38537
139
2.4
139
77
8
353
27
12
15
44
1.83
43751--43985
114
2.1
114
91
0
389
46
8
14
31
1.73

Tables:   1

The End!