Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005989.1 Hibiscus syriacus cultivar Beakdansim tig00014083_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111264

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25442--25534
18
5.5
18
71
14
63
8
35
8
47
1.65
25443--25505
30
2.1
30
82
5
74
7
39
6
46
1.59
26894--26950
21
2.7
21
94
2
96
36
14
15
33
1.88
27828--27858
2
15.5
2
93
0
53
51
0
0
48
1.00
39142--39180
18
2.2
19
86
9
55
61
0
2
35
1.10
54390--54419
15
2.0
15
100
0
60
6
46
13
33
1.69
62342--62384
19
2.1
21
87
8
63
41
0
2
55
1.12
62504--62589
42
2.0
42
91
4
138
22
19
22
36
1.96
69203--69276
37
2.0
37
97
0
139
41
2
14
40
1.60
72724--72754
15
2.1
15
100
0
62
45
0
22
32
1.53
73405--73463
13
4.8
13
87
12
97
16
50
16
15
1.78
73403--73481
18
4.4
18
77
17
83
17
48
18
15
1.82
73403--73450
23
2.1
23
100
0
96
16
52
18
12
1.75
73423--73483
31
2.0
31
90
0
95
18
45
18
18
1.85
74778--74812
18
1.9
18
88
0
52
54
0
17
28
1.43
77902--77932
15
2.1
15
100
0
62
45
0
22
32
1.53
78603--78661
13
4.8
13
85
12
88
16
49
16
16
1.81
78603--78679
18
4.3
18
73
18
70
18
46
18
16
1.84
78603--78648
23
2.0
23
100
0
92
17
52
17
13
1.75
78623--78681
31
1.9
31
89
0
91
16
44
18
20
1.87
78677--78710
15
2.1
16
89
10
52
11
35
26
26
1.91
79992--80027
18
2.0
18
88
0
54
52
0
16
30
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90091--90125
2
17.5
2
93
0
61
48
0
2
48
1.16
90916--91017
3
34.0
3
97
0
195
0
32
0
66
0.98
97951--98022
34
2.1
34
89
0
108
40
2
8
48
1.48

Tables:   1

The End!