Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005990.1 Hibiscus syriacus cultivar Beakdansim tig00014086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106411

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3888--3926
13
3.2
13
78
14
55
15
15
10
58
1.62
4868--5008
20
7.1
20
81
4
151
35
22
19
21
1.96
5565--5643
20
3.9
21
86
5
94
51
17
18
11
1.75
5668--5758
33
2.8
33
96
0
164
13
20
20
45
1.85
5668--5807
19
7.8
19
69
18
84
14
20
19
45
1.85
5724--5798
20
3.8
20
77
10
73
16
21
18
44
1.87
7445--7612
33
4.9
33
80
9
192
14
22
19
44
1.86
7467--7599
20
7.4
19
72
19
115
15
21
18
44
1.87
7498--7632
20
7.5
19
67
19
65
16
21
20
42
1.89
10137--10190
24
2.2
24
93
0
90
40
20
18
20
1.91
11527--11565
19
2.1
19
95
0
69
61
0
0
38
0.96
11548--11572
12
2.1
12
100
0
50
52
0
0
48
1.00
11544--11607
32
2.1
29
83
13
76
48
1
1
48
1.20
11745--11778
13
2.5
13
90
9
50
58
0
2
38
1.13
13188--13264
20
3.9
21
78
10
81
36
25
16
20
1.94
18991--19045
28
1.9
29
85
3
76
60
5
0
34
1.20
20389--20426
19
2.1
19
85
9
53
63
2
0
34
1.09
24076--24111
14
2.5
15
90
4
56
38
36
8
16
1.79
28875--28947
2
36.5
2
100
0
146
49
0
0
50
1.00
29083--29115
17
1.9
17
100
0
66
21
6
6
66
1.35
31400--31438
19
2.1
19
85
0
51
48
2
5
43
1.38
32648--32689
20
2.2
20
86
4
59
52
9
19
19
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32899--32940
22
1.9
22
85
0
57
71
0
7
21
1.09
53494--53627
24
5.6
24
81
1
135
42
18
11
26
1.85
56077--56107
13
2.4
13
94
0
53
19
22
41
16
1.89
63168--63218
25
2.0
25
100
0
102
25
27
3
43
1.72
67032--67081
14
3.9
13
78
21
61
10
14
26
50
1.73
67030--67091
24
2.6
24
92
0
97
11
12
24
51
1.72
67049--67104
24
2.3
24
87
0
76
14
10
17
57
1.65
68179--68237
16
3.8
16
77
8
77
11
13
18
55
1.68
68181--68245
30
2.2
30
85
0
85
13
10
15
60
1.60
68306--68338
16
2.1
16
100
0
66
6
12
24
57
1.57
71779--71851
29
2.5
29
84
0
83
19
38
27
15
1.91
72561--72658
47
2.1
46
81
7
108
27
20
24
27
1.99
78483--78531
8
5.8
9
72
13
50
63
2
2
32
1.17
78480--78531
16
3.1
17
83
10
63
65
1
1
30
1.14
83333--83399
2
33.5
2
100
0
134
49
0
0
50
1.00
83967--84015
21
2.3
21
75
6
55
48
16
10
24
1.76
88039--88101
26
2.4
26
100
0
126
55
12
3
28
1.52
90863--90913
22
2.3
23
90
6
79
27
5
13
52
1.63
94635--94681
22
2.1
22
92
0
76
38
10
0
51
1.37
103002--103120
61
2.0
61
85
6
161
23
21
18
36
1.95

Tables:   1

The End!