genome.fa.s5991.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005991.1 Hibiscus syriacus cultivar Beakdansim tig00014096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153408

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10525--10585	31	2.0	31	93	0	104	24	26	16	32	1.96
20280--20330	21	2.4	22	93	3	86	21	21	11	45	1.84
24250--24292	12	3.4	12	78	12	50	39	0	6	53	1.28
24245--24326	26	3.2	25	78	1	83	37	2	6	53	1.39
45780--45818	2	19.5	2	100	0	78	51	0	0	48	1.00
46047--46119	20	3.6	20	71	10	67	15	21	23	39	1.91
46026--46136	21	5.4	21	69	8	93	20	18	24	36	1.95
46022--46136	41	2.8	41	94	2	196	20	19	23	36	1.95
46921--47010	20	4.4	21	73	5	85	38	20	21	20	1.93
46921--47011	41	2.2	42	84	5	123	38	20	20	19	1.94
47833--47897	33	2.0	33	87	0	94	41	6	10	41	1.65
49638--49686	24	2.0	24	88	0	71	26	20	20	32	1.97
52138--52199	26	2.3	27	83	8	74	37	1	3	58	1.24
62821--62889	32	2.2	32	89	0	102	42	15	4	37	1.68
63167--63228	30	2.1	30	87	0	88	40	8	16	35	1.78
65026--65061	2	18.0	2	100	0	72	50	0	0	50	1.00
68400--68449	26	1.9	26	100	0	100	32	8	28	32	1.86
77805--78125	162	2.0	160	98	1	617	32	24	19	24	1.98
79317--79349	17	1.9	17	100	0	66	18	33	24	24	1.97
87966--88121	77	2.0	77	96	0	285	37	28	14	19	1.91
90208--90245	19	2.0	20	89	5	60	73	2	0	23	0.95
90221--90472	127	2.0	127	96	0	459	45	8	3	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90362--90423	27	2.2	28	75	13	65	45	6	0	48	1.28
93512--93565	18	3.0	18	76	10	65	18	5	51	24	1.67
93560--93595	12	3.0	12	83	0	54	0	8	50	41	1.33
100393--100418	5	5.2	5	100	0	52	0	0	23	76	0.78
107690--107726	14	2.6	14	86	0	56	37	10	27	24	1.88
111405--111460	23	2.4	24	85	5	71	37	1	0	60	1.07
116265--116996	367	2.0	367	99	0	1455	32	18	16	32	1.93
123459--123587	59	2.2	60	84	1	170	30	18	6	44	1.76
123459--123604	60	2.4	58	84	5	184	30	17	7	43	1.77
143045--143153	29	3.8	29	90	0	182	22	23	33	19	1.97
143048--143175	58	2.2	58	98	0	247	23	24	32	19	1.97
143047--143175	29	4.4	29	87	0	177	23	24	32	19	1.97
146967--147061	27	3.5	27	98	1	181	18	7	10	63	1.49
147035--147110	35	2.2	35	100	0	152	15	11	14	57	1.65

Tables:   1

The End!