genome.fa.s5992.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005992.1 Hibiscus syriacus cultivar Beakdansim tig00014097_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73904

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330--400	31	2.3	31	90	2	108	39	7	15	38	1.75
500--538	21	1.9	20	89	5	60	28	17	15	38	1.91
5595--5741	62	2.4	62	80	8	174	30	22	14	31	1.94
5795--6143	137	2.6	136	85	0	464	33	26	15	24	1.95
5815--6198	137	2.8	135	81	5	450	32	27	14	26	1.95
6226--6629	73	5.5	73	83	3	499	36	16	20	26	1.93
6570--6654	42	2.0	41	88	6	127	36	18	20	24	1.95
8203--8238	6	6.0	6	87	12	56	30	0	2	66	1.06
10306--10348	22	2.0	22	86	9	61	44	2	0	53	1.13
10289--10359	30	2.4	30	77	13	76	49	1	1	47	1.18
10378--10447	30	2.4	30	80	7	81	51	2	0	45	1.16
10389--10447	30	2.0	29	86	6	82	49	3	0	47	1.18
10925--10967	18	2.4	18	80	0	50	58	2	2	37	1.24
15147--15476	44	7.5	44	71	13	230	22	20	16	40	1.91
15122--15476	89	4.0	89	86	2	473	23	20	16	40	1.91
15130--15476	176	2.0	178	86	2	493	23	20	16	40	1.91
16166--16230	22	2.9	22	86	2	94	41	12	10	35	1.78
16299--16464	57	2.9	56	90	1	260	31	25	7	34	1.85
21755--21790	16	2.3	16	90	4	56	80	2	0	16	0.83
22244--22289	24	1.9	24	82	8	58	47	6	2	43	1.41
24996--25088	34	2.7	34	96	0	168	32	25	26	15	1.95
24996--25115	34	3.6	32	86	4	125	30	26	25	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24996--25134	66	2.1	67	79	5	147	33	25	24	17	1.96
26231--26282	25	2.0	26	85	3	70	17	7	25	50	1.72
29095--29338	131	1.9	131	83	3	321	36	7	13	42	1.73
35443--37577	134	16.0	134	80	4	1945	32	21	15	29	1.94
38781--38822	19	2.3	19	88	8	61	28	4	7	59	1.44
39750--40056	130	2.4	129	81	4	334	33	10	12	42	1.78
39813--40055	130	1.9	127	86	2	342	35	10	12	41	1.78
42104--42154	21	2.3	23	78	18	56	49	3	1	45	1.32
42145--42203	21	2.8	21	70	10	57	38	0	1	59	1.08
42146--42203	13	4.2	13	77	12	62	37	0	1	60	1.07
42215--42306	37	2.7	35	83	14	113	42	3	1	53	1.24
46229--46294	3	22.0	3	89	6	98	36	1	0	62	1.05
55810--56330	133	3.9	134	83	1	636	30	21	17	30	1.96
56219--56422	92	2.2	92	87	1	293	31	19	19	30	1.96
56086--56555	225	2.1	225	86	2	649	30	21	17	31	1.96
56311--57804	133	11.2	133	81	2	1557	31	20	16	31	1.95
55953--56688	358	2.1	357	83	4	928	30	20	17	31	1.96
56311--57804	400	3.7	397	80	4	1633	31	20	16	31	1.95
71831--71911	38	2.2	38	86	6	114	25	4	38	30	1.77

Tables:   1

The End!