genome.fa.s5993.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005993.1 Hibiscus syriacus cultivar Beakdansim tig00014105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48550

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3445--3614	80	2.1	81	93	1	288	30	19	11	38	1.87
17557--17635	42	1.9	41	84	2	104	21	20	22	35	1.96
17165--17702	256	2.1	256	88	3	780	33	15	17	34	1.91
17421--17985	287	2.0	287	87	1	828	32	16	17	33	1.92
17707--18333	259	2.4	257	87	2	873	32	14	16	36	1.89
18772--19193	38	10.7	38	79	8	355	25	17	16	40	1.90
18772--19193	80	5.4	76	77	11	325	25	17	16	40	1.90
18880--19691	45	19.0	42	76	8	418	22	17	18	41	1.90
18879--19317	161	2.7	163	78	12	457	24	17	17	40	1.91
18846--19363	132	4.2	119	82	7	422	24	17	17	40	1.91
19116--19692	45	13.0	45	78	4	517	21	17	19	41	1.90
19138--19692	135	4.2	132	84	1	615	21	17	20	41	1.91
19685--20125	132	3.3	133	83	5	559	30	18	18	32	1.95
20339--20399	12	4.8	12	74	20	52	27	1	1	68	1.08
20338--20405	21	3.4	20	76	13	77	27	1	1	69	1.06
21462--21504	13	3.3	13	80	0	50	83	0	6	9	0.80
26446--26501	26	2.2	26	90	0	85	19	41	23	16	1.90
27855--27884	5	6.0	5	92	0	51	16	20	43	20	1.88
33573--33631	30	2.0	30	83	6	75	42	13	23	20	1.88
36380--36422	18	2.4	18	88	0	59	20	9	0	69	1.15
37341--37382	22	1.9	22	95	0	75	61	7	7	23	1.47
41518--41619	47	2.2	46	87	3	150	42	4	20	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45461--45504	18	2.4	18	88	0	61	15	6	36	40	1.74

Tables:   1

The End!