genome.fa.s5996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005996.1 Hibiscus syriacus cultivar Beakdansim tig00014120_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69187

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8760--8847	12	8.2	11	87	8	62	60	0	0	39	0.97
8772--8849	3	26.0	3	94	0	138	64	0	0	35	0.94
9087--9981	113	8.0	113	92	1	1295	28	17	14	38	1.90
9084--9981	340	2.7	339	90	2	1330	28	18	14	38	1.90
10683--11561	83	10.6	83	95	0	1514	36	22	14	27	1.92
12271--12323	16	3.1	16	81	8	61	49	3	9	37	1.53
12643--12708	1	66.0	1	84	0	87	0	7	0	92	0.39
12642--12708	28	2.4	28	92	7	111	0	8	0	91	0.43
24505--24580	3	25.0	3	89	2	116	63	0	0	36	0.95
24857--25825	113	8.6	113	93	1	1518	28	18	14	38	1.90
26552--27434	83	10.6	83	95	0	1534	36	22	14	27	1.93
28144--28196	16	3.1	16	81	8	61	49	5	9	35	1.59
28517--28595	1	79.0	1	74	0	59	0	13	0	86	0.58
28517--28593	8	9.6	8	85	5	93	0	14	0	85	0.59
28517--28602	8	12.1	7	83	12	81	0	15	0	84	0.61
28517--28599	9	9.0	9	80	16	73	0	14	0	85	0.60
28514--28605	40	2.3	40	84	1	121	0	17	0	82	0.67
30231--30281	26	2.1	24	85	10	68	60	1	1	35	1.19
30694--30772	41	1.9	42	82	7	99	48	6	0	45	1.28
32313--32381	3	23.0	3	87	0	102	60	0	0	39	0.97
32573--32637	32	2.0	32	93	0	112	29	21	33	15	1.94
32997--33057	26	2.3	26	91	0	95	31	32	11	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33094--33125	6	5.3	6	100	0	64	53	15	31	0	1.43
33289--33337	21	2.3	21	82	10	64	32	0	16	51	1.45
33314--33376	28	2.2	30	91	5	103	31	0	12	55	1.37
33845--33901	17	3.4	17	83	9	80	43	0	10	45	1.38
37245--37547	49	6.1	49	91	5	420	42	0	11	46	1.39
37754--38074	11	26.3	11	71	21	141	43	1	9	45	1.47
37758--37849	19	5.2	18	71	24	79	35	0	11	52	1.39
37764--37860	16	5.9	15	71	24	63	36	0	12	51	1.40
37764--37832	8	8.2	8	77	16	61	34	0	13	52	1.40
37755--37856	35	3.0	35	95	2	181	35	0	12	51	1.40
37761--37963	64	3.3	63	80	13	228	40	1	9	48	1.45
37850--38063	26	8.5	26	77	10	196	46	2	7	42	1.47
37799--37990	90	2.2	88	88	8	284	42	2	8	46	1.45
38159--38279	59	2.1	56	90	4	188	38	4	7	49	1.50
38191--38235	24	1.9	24	86	4	65	40	2	4	53	1.33
38202--38243	17	2.5	17	80	0	57	40	0	2	57	1.12
39154--39198	23	2.0	23	86	0	63	55	2	2	40	1.24
40495--40598	30	3.4	30	86	6	140	47	12	0	39	1.48
40779--40818	21	1.9	21	94	0	71	57	12	0	30	1.36
40846--40900	18	3.4	18	65	31	52	52	9	0	38	1.33
40907--40966	30	2.1	28	81	12	68	43	10	0	46	1.37
41030--41094	28	2.3	29	82	10	82	46	15	1	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40536--41215	370	1.8	364	84	8	917	47	12	1	39	1.49
41149--41188	21	1.9	21	94	0	71	60	15	0	25	1.35
41176--41260	39	2.2	39	95	0	152	41	16	3	38	1.66
41176--41284	39	2.8	40	86	8	145	44	16	2	36	1.62
41337--41381	23	2.0	22	83	12	56	0	44	2	53	1.13
45902--45932	2	15.5	2	100	0	62	51	0	0	48	1.00
48823--48848	13	2.0	13	100	0	52	30	7	23	38	1.83
49160--49243	21	3.9	21	76	17	91	21	15	28	34	1.94
49171--49256	44	2.0	44	90	0	136	22	16	27	33	1.95
52088--52323	29	8.2	29	87	2	296	43	13	2	39	1.59
52113--52323	57	3.7	57	90	0	305	44	13	2	39	1.59
52094--52310	86	2.5	85	84	2	281	44	13	2	40	1.56
52315--52410	29	3.3	29	86	0	138	40	14	4	40	1.65
52933--52991	20	3.0	20	85	9	77	27	8	8	55	1.58
56472--56707	28	8.3	29	89	3	331	44	15	2	37	1.58
56472--56707	57	4.2	57	89	3	334	44	15	2	37	1.58
56699--56794	29	3.3	29	85	0	102	40	13	3	42	1.60
57330--57388	20	3.0	20	90	9	86	27	6	10	55	1.58
63076--63109	17	1.9	18	88	5	52	14	11	0	73	1.10
65774--65816	14	3.0	14	80	16	52	13	2	4	79	1.00
65778--65821	23	1.9	23	81	9	54	18	2	2	77	0.98
67934--68003	31	2.3	31	94	0	122	21	18	18	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67933--68026	31	3.0	31	85	3	91	21	15	22	40	1.91

Tables:   1

The End!