genome.fa.s5998.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005998.1 Hibiscus syriacus cultivar Beakdansim tig00014135_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73921

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4773--4821	21	2.3	22	89	7	82	48	4	24	22	1.67
5785--5897	39	2.9	39	85	6	149	41	28	4	25	1.74
6772--6823	21	2.5	21	81	3	61	38	19	25	17	1.93
6812--6865	20	2.7	20	97	0	99	31	24	18	25	1.97
6791--6905	61	1.9	61	81	3	142	34	22	20	22	1.96
7459--7537	19	4.1	19	88	3	113	13	22	16	46	1.82
7459--7537	39	2.1	38	87	2	113	13	22	16	46	1.82
9650--9823	42	4.1	42	77	2	163	22	35	18	23	1.96
9617--9792	84	2.1	84	94	0	307	21	36	16	25	1.94
9617--9823	84	2.5	84	89	1	272	22	35	17	24	1.95
11178--11212	14	2.6	14	95	4	63	31	0	25	42	1.55
11337--11393	14	3.7	14	75	20	60	43	22	24	8	1.81
11319--11408	33	2.7	33	92	0	144	43	20	22	14	1.87
11319--11379	19	3.5	19	74	21	69	44	21	22	11	1.84
11404--11554	19	8.7	19	63	21	71	15	21	20	42	1.89
11408--11534	33	3.9	32	85	8	184	14	22	19	43	1.88
11401--11533	66	2.0	66	95	0	239	16	21	19	42	1.89
13825--13861	12	3.1	12	100	0	74	0	27	0	72	0.84
14036--14089	24	2.2	24	90	0	81	40	20	16	22	1.91
14891--15002	20	5.5	20	74	5	73	38	19	18	23	1.93
15215--15282	20	3.4	20	72	8	75	39	23	20	16	1.91
15314--15367	14	3.5	14	75	22	54	12	18	20	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15311--15375	33	2.0	33	87	0	94	15	20	20	44	1.86
15494--15530	14	2.6	14	86	0	56	48	21	0	29	1.50
17389--17456	20	3.5	20	79	2	75	38	23	22	16	1.93
17445--17535	14	5.9	14	74	20	83	48	23	17	10	1.79
17433--17540	33	3.3	33	97	1	200	48	22	18	11	1.79
17547--17662	19	6.6	19	74	17	92	13	20	21	43	1.86
17569--17626	14	3.9	14	79	16	71	10	17	24	48	1.78
17552--17642	32	2.8	33	94	3	166	12	18	21	47	1.81
17627--17670	20	2.3	19	92	4	70	20	22	18	38	1.93
18157--18201	18	2.5	18	88	0	72	13	15	44	26	1.83
19520--19578	20	3.0	20	87	0	73	42	22	18	16	1.89
19831--19879	22	2.3	21	80	10	55	24	14	40	20	1.89
19838--19881	22	2.0	22	90	0	70	20	15	43	20	1.88
20070--20121	20	2.6	20	93	0	86	25	21	28	25	1.99
20132--20183	20	2.5	20	81	3	59	17	25	19	38	1.93
21919--22371	182	2.5	182	94	0	789	26	16	14	43	1.86
22242--22703	112	4.1	112	92	1	775	24	15	14	45	1.84
24919--25000	43	1.9	43	87	0	119	31	10	23	34	1.89
24969--25087	43	2.8	43	81	7	134	21	19	26	32	1.97
24988--25171	43	4.3	43	73	5	140	23	19	23	34	1.97
24983--25216	128	1.8	128	80	7	278	24	17	24	32	1.97
25147--25258	43	2.6	43	80	5	127	26	10	27	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25247--25361	41	2.8	41	80	8	124	28	19	20	32	1.96
25713--25759	21	2.2	21	88	0	67	6	40	17	36	1.75
34124--34639	42	12.5	42	72	9	228	33	17	18	30	1.94
34167--34649	164	2.9	164	82	4	580	33	16	18	30	1.94
34417--34508	40	2.3	40	84	0	121	40	17	13	29	1.87
34515--34598	43	2.0	42	92	2	141	29	14	25	30	1.95
37301--37343	13	3.2	13	80	6	50	32	2	2	62	1.20
40312--40343	2	16.0	2	100	0	64	50	0	0	50	1.00
54702--55339	135	4.7	135	86	2	836	35	15	19	28	1.93
54702--55339	270	2.4	270	88	2	960	35	15	19	28	1.93
55690--55737	24	2.0	23	88	4	69	31	41	20	6	1.77
56010--56120	35	3.2	35	80	10	111	22	17	9	51	1.73
56764--56790	2	13.5	2	100	0	54	48	0	0	51	1.00
56973--57026	15	3.7	14	80	11	56	22	5	0	72	1.05
57214--57247	2	17.0	2	100	0	68	50	0	0	50	1.00
59275--59341	26	2.9	23	72	22	59	71	0	2	25	1.00
59515--59646	28	4.6	28	67	22	78	62	3	3	31	1.28
59592--59634	18	2.5	17	85	7	61	67	2	4	25	1.22
60786--61130	105	3.3	105	90	3	511	21	18	27	31	1.97
61696--61891	68	2.9	65	79	7	196	37	8	20	33	1.83
61870--62128	36	7.3	36	76	11	221	41	13	18	27	1.87
61878--61970	37	2.6	36	85	1	114	41	16	19	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61818--62177	138	2.6	137	85	1	470	39	12	18	29	1.87
63083--63126	22	2.0	22	91	8	72	27	11	22	38	1.88
63713--63766	24	2.3	24	81	12	67	0	12	7	79	0.92
63724--63775	13	4.2	12	80	5	59	0	9	5	84	0.77
63724--63781	7	7.4	8	79	12	59	0	10	5	84	0.77
63730--63781	9	5.3	9	74	17	50	0	9	5	84	0.77
63714--63790	31	2.5	31	78	6	93	0	15	6	77	0.95
63724--63783	16	3.8	16	75	20	63	0	11	6	81	0.86
64948--64993	8	6.0	8	87	5	60	58	13	17	10	1.62
64948--64986	14	2.6	15	84	12	53	61	12	15	10	1.56
64948--64993	15	3.1	14	87	9	56	58	13	17	10	1.62
68091--68126	18	2.1	18	89	5	56	66	2	5	25	1.27
68623--68854	105	2.1	109	78	8	242	20	15	13	50	1.77
73880--73918	21	1.9	20	89	5	60	20	20	10	48	1.78

Tables:   1

The End!