Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005999.1 Hibiscus syriacus cultivar Beakdansim tig00014137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 196101
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:6172 original size:24 final size:24
Alignment explanation
Indices: 6134--6181 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
6124 ATTCGTGAAC
* * *
6134 ATTCTACGTGGCACTATTTGTGCA
1 ATTCTACGCGACACTATATGTGCA
6158 ATTCTACGCGACACTATATGTGCA
1 ATTCTACGCGACACTATATGTGCA
6182 TTGAGAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (24 bp):
ATTCTACGCGACACTATATGTGCA
Found at i:13977 original size:13 final size:13
Alignment explanation
Indices: 13959--13987 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
13949 TACAATAACC
13959 TAATTTAAATAAA
1 TAATTTAAATAAA
13972 TAATTTAAATAAA
1 TAATTTAAATAAA
13985 TAA
1 TAA
13988 ACTAGGGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATTTAAATAAA
Found at i:17747 original size:55 final size:55
Alignment explanation
Indices: 17679--18188 Score: 626
Period size: 55 Copynumber: 9.3 Consensus size: 55
17669 GGATAAGTGA
* * * * * * * *
17679 GACTTGAAAAATCTTCGGAAAACGTGTCCACTCCTTATTCTTTCAGGGAATATAA
1 GACTCGAACAATCTTCAGCAAACGTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
* * * *
17734 GACTCGAACAATCTTCAGCAAACAG-GCCCACTCCCTATTCTTTCAGTGAGTATAA
1 GACTCGAACAATCTTCAGCAAAC-GTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
* * *
17789 GACTCGAACAATCTTCAGTAAACGTGTTCGCTCCTTATTCTTTCAGGGAGTATAG
1 GACTCGAACAATCTTCAGCAAACGTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
* * * * *
17844 GACTCGAACAATCTTTAGCAAACGTGTCTGCTCCTTATTCTTTTAGAGAGTATAG
1 GACTCGAACAATCTTCAGCAAACGTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
* * * *
17899 GACTCGAATAATCTTAAGCAAACGTGACTGCTCCCTATTCTTTCAGGGAGTATAG
1 GACTCGAACAATCTTCAGCAAACGTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
* * *
17954 GACTCGAACAATCTTCAGCAAAAGTGTCTGCTCCCTATTCTTTCAGGGAGTGTAG
1 GACTCGAACAATCTTCAGCAAACGTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
* * * * * ** * * *
18009 GGCTTGAAAAATCATCAGAAAATATATCCGCTCCCTATTCTTTCAGAGATTATAG
1 GACTCGAACAATCTTCAGCAAACGTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
* ** *
18064 GACTCGAACAATCTTCAGCAAATGTGTTTGTTCCCTATTCTTTCAGGGAGTATAG
1 GACTCGAACAATCTTCAGCAAACGTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
*
18119 GACTCGAACAATCTTCAGCAAACGTGTCCTCTCCCTATTCTTTCAGGGAGTATAG
1 GACTCGAACAATCTTCAGCAAACGTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
18174 GACTCGAACAATCTT
1 GACTCGAACAATCTT
18189 TATAAAATGA
Statistics
Matches: 392, Mismatches: 61, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
54 1 0.00
55 390 0.99
56 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (55 bp):
GACTCGAACAATCTTCAGCAAACGTGTCCGCTCCCTATTCTTTCAGGGAGTATAG
Found at i:18290 original size:37 final size:36
Alignment explanation
Indices: 18236--18349 Score: 165
Period size: 37 Copynumber: 3.1 Consensus size: 36
18226 ATCATACTCG
18236 AGATTGATTTGCTTCACTACTCTTTCGTGAAGGCTTA
1 AGATT-ATTTGCTTCACTACTCTTTCGTGAAGGCTTA
* *
18273 AGATTAATTTGCCTCACTACTCTTCCGTGAAGGCTTA
1 AGATT-ATTTGCTTCACTACTCTTTCGTGAAGGCTTA
* * *
18310 AGATTATTTTCTTCACTACTCTATCGTGAAGGCTTG
1 AGATTATTTGCTTCACTACTCTTTCGTGAAGGCTTA
18346 AGAT
1 AGAT
18350 GGCCCGAAGT
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
36 30 0.43
37 39 0.57
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (36 bp):
AGATTATTTGCTTCACTACTCTTTCGTGAAGGCTTA
Found at i:20390 original size:99 final size:99
Alignment explanation
Indices: 20219--20408 Score: 281
Period size: 99 Copynumber: 1.9 Consensus size: 99
20209 TTGTAATTTT
* * *
20219 CCTTTCTCAGGCTAGCTAAATCTTATCCATAATGCCAGGGCGTTTAACCAATTGCTCTAGAGGGA
1 CCTTTATCAGGCTAGCTAAATCTTATCCATAAAGCCAGGGCGTTTAACAAATTGCTCTAGAGGGA
* * *
20284 CATCTCAATCTTAAATGTATATATATTATAATCA
66 CAACTCAAGCTTAAATGTATACATATTATAATCA
* **
20318 CCTTTATCAGGCTAGCTGAATCTTATCCATAAAGTTAGGGCGTTTAACAAATTGCTCTAGAGGGA
1 CCTTTATCAGGCTAGCTAAATCTTATCCATAAAGCCAGGGCGTTTAACAAATTGCTCTAGAGGGA
* *
20383 CAACTCAAGCTTTATTGTATACATAT
66 CAACTCAAGCTTAAATGTATACATAT
20409 AATATTATAA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 80 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (99 bp):
CCTTTATCAGGCTAGCTAAATCTTATCCATAAAGCCAGGGCGTTTAACAAATTGCTCTAGAGGGA
CAACTCAAGCTTAAATGTATACATATTATAATCA
Found at i:22711 original size:46 final size:48
Alignment explanation
Indices: 22652--22748 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 48
22642 TATCTACCCC
* * *
22652 CATGCTTTGTTTGA-ACAAAAT-ACCATAACCGCATGATATCTATTTCG
1 CATGCTTTATTTGAGA-AAAATAAACATAACCGCATGATATCTAGTTCG
*
22699 CATGC-TTATTTGAGAAAAATAAACATAACCGCATGATCTCTAGTTCG
1 CATGCTTTATTTGAGAAAAATAAACATAACCGCATGATATCTAGTTCG
22746 CAT
1 CAT
22749 ATATTTATTC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
46 12 0.27
47 32 0.73
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (48 bp):
CATGCTTTATTTGAGAAAAATAAACATAACCGCATGATATCTAGTTCG
Found at i:22765 original size:47 final size:48
Alignment explanation
Indices: 22675--22773 Score: 107
Period size: 47 Copynumber: 2.1 Consensus size: 48
22665 AACAAAATAC
* * *
22675 CATAACCGCATGATATCTATTTCGCATGCTTATTTGAGAAAAAT-AAA
1 CATAACCGCATGATATCTAGTTCGCATACTTATTCGAGAAAAATGAAA
* *
22722 CATAACCGCATGATCTCTAGTTCGCATATATTTATTCG-G-AAAATGAAA
1 CATAACCGCATGATATCTAGTTCGC--ATACTTATTCGAGAAAAATGAAA
22770 -ATAA
1 CATAA
22774 ATGACTCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
47 32 0.73
48 4 0.09
49 8 0.18
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.31
Consensus pattern (48 bp):
CATAACCGCATGATATCTAGTTCGCATACTTATTCGAGAAAAATGAAA
Found at i:28169 original size:60 final size:61
Alignment explanation
Indices: 28099--28212 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
28089 ATTGAATTGT
* * *
28099 AAACTTTTAAATATTTT-AATTTC-TTCTCTAAACTATGAAT-ATCATTCTAAATTAGTCATC
1 AAACTATTAAACATTTTGAATTTCATCCTC-AAACTATG-ATCATCATTCTAAATTAGTCATC
* *
28159 AAACTATTAAACATTTTGATTTTCATCCTCAAACTATGATCTTCATTCTAAATT
1 AAACTATTAAACATTTTGAATTTCATCCTCAAACTATGATCATCATTCTAAATT
28213 GGTCCCCGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
60 17 0.37
61 25 0.54
62 4 0.09
ACGTcount: A:0.36, C:0.17, G:0.04, T:0.44
Consensus pattern (61 bp):
AAACTATTAAACATTTTGAATTTCATCCTCAAACTATGATCATCATTCTAAATTAGTCATC
Found at i:32836 original size:22 final size:22
Alignment explanation
Indices: 32806--32847 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
32796 TATTTTTTTA
*
32806 TGAATAGTGATGAACAGTACCG
1 TGAACAGTGATGAACAGTACCG
32828 TGAACAGTGATGAACAGTAC
1 TGAACAGTGATGAACAGTAC
32848 AATACAACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.21
Consensus pattern (22 bp):
TGAACAGTGATGAACAGTACCG
Found at i:39938 original size:28 final size:26
Alignment explanation
Indices: 39889--39950 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 26
39879 TTTTTCTTAT
*
39889 TTATTTTGAATTTGGCATTTGTTTTGG
1 TTATTTTGAATTTGGCACTTGTTTT-G
*
39916 TCTATTTT-AATTTAGTCACTTGTTTTG
1 T-TATTTTGAATTT-GGCACTTGTTTTG
39943 TTATTTTG
1 TTATTTTG
39951 TTTGTTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
26 6 0.20
27 8 0.27
28 16 0.53
ACGTcount: A:0.16, C:0.06, G:0.16, T:0.61
Consensus pattern (26 bp):
TTATTTTGAATTTGGCACTTGTTTTG
Found at i:43151 original size:17 final size:17
Alignment explanation
Indices: 43129--43184 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
43119 TTATATATTA
43129 TTTTAATTAATTAAATT
1 TTTTAATTAATTAAATT
* * *
43146 TTTTAATTAGTGAAA-A
1 TTTTAATTAATTAAATT
*
43162 TTTTAAATAATT--ATT
1 TTTTAATTAATTAAATT
43177 TTTTAATT
1 TTTTAATT
43185 TTCTCATATT
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
14 1 0.03
15 7 0.23
16 9 0.30
17 13 0.43
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (17 bp):
TTTTAATTAATTAAATT
Found at i:44848 original size:12 final size:12
Alignment explanation
Indices: 44833--44864 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
44823 TTGTTCTAAT
44833 CTTGTTTCTTAC
1 CTTGTTTCTTAC
44845 CTTGTTTCTTAC
1 CTTGTTTCTTAC
44857 CTTGTTTC
1 CTTGTTTC
44865 CAGCACATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.25, G:0.09, T:0.59
Consensus pattern (12 bp):
CTTGTTTCTTAC
Found at i:45251 original size:10 final size:10
Alignment explanation
Indices: 45228--45262 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
45218 AAAGAAAAAT
*
45228 CAAAAAGCCA
1 CAAAAAGTCA
45238 -AAAAAGTCA
1 CAAAAAGTCA
45247 CAAAAAGTCA
1 CAAAAAGTCA
45257 CAAAAA
1 CAAAAA
45263 TTGAAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.66, C:0.20, G:0.09, T:0.06
Consensus pattern (10 bp):
CAAAAAGTCA
Found at i:51769 original size:360 final size:361
Alignment explanation
Indices: 51100--51820 Score: 1266
Period size: 360 Copynumber: 2.0 Consensus size: 361
51090 TAGGCCATTT
*
51100 ACCTCGAACCACTCCTCAAGAGCAACATCAACTATTAACTTAGGCAAACCATCATCTAATTTCTT
1 ACCTCGAACCACTCCTCAAGAGCAACATCAACTACTAACTTAGGCAAACCATCATCTAATTTCTT
*
51165 TGGCACTCAAACTATCTATGGAGCCTTAACATGCTCACAAAACTTCTCCCCATTCCTAAAAACAC
66 GGGCACTCAAACTATCTATGGAGCCTTAACATGCTCACAAAACTTCTCCCCATTCCTAAAAACAC
* *
51230 AATAGTATGGGCATCAAGGAGGGAACCATGGAAATTTAACAATAACTGATGCCAGGGAACCATCC
131 AATAGTATGAGCATCAAGGAGGGAACCATGGAAATTTAACAATAACTGATGCCAAGGAACCATCC
* *
51295 TTGAGTTGAACATTGATAAATTAAGGCACCTTCAAAGTGGAAGATACCTCAACACAAACATTGGA
196 TTGAGTGGAACATTGATAAATTAAGGCACCTTCAAAGTGGAAGACACCTCAACACAAACATTGGA
* *
51360 AAATGTTGGTTTTTGCCCTACTCAAGTGCATCCACACAAGTAATTTATTCAGACTGAAACTCAAA
261 AAACGCTGGTTTTTGCCCTACTCAAGTGCATCCACACAAGTAATTTATTCAGACTGAAACTCAAA
*
51425 GAATTCATATTAGGTTCCTATTTCCTAAAACTAATC
326 GAATTCATATTAGGTTCCTATTTCCTAAAAATAATC
* * *
51461 ACCTCGGACCACTCCTCAGGAGCAACATCAACTGCTAACTTAGGCAAACCATCATCTAATTTCTT
1 ACCTCGAACCACTCCTCAAGAGCAACATCAACTACTAACTTAGGCAAACCATCATCTAATTTCTT
51526 GGGCACTCAAACTATCTATGGAGCCTTAACATGCTCACAAAACTTCT-CCCATTCCTAAAAACAC
66 GGGCACTCAAACTATCTATGGAGCCTTAACATGCTCACAAAACTTCTCCCCATTCCTAAAAACAC
51590 AATAGTATGAGCATCAAGGAGGGAACCATGGAAATTTAACAATAACTGATGCCAAGGAACCATCC
131 AATAGTATGAGCATCAAGGAGGGAACCATGGAAATTTAACAATAACTGATGCCAAGGAACCATCC
* *
51655 TTGAGTGGAACATTGATAAATTAAGGCACCTTCAAAGTGGTAGACACCTCAACACAAACCTT-GA
196 TTGAGTGGAACATTGATAAATTAAGGCACCTTCAAAGTGGAAGACACCTCAACACAAACATTGGA
* *
51719 CAAACGCTGGTTTTTGCCCTACTCAAGTGCATCCACACAAGTAATTTATTCAGATTGAACCTCAA
261 -AAACGCTGGTTTTTGCCCTACTCAAGTGCATCCACACAAGTAATTTATTCAGACTGAAACTCAA
*
51784 AGAATTCATATTAGGTTCCTATTTTCTAAAAATAATC
325 AGAATTCATATTAGGTTCCTATTTCCTAAAAATAATC
51821 CCCTTATTCT
Statistics
Matches: 342, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
359 2 0.01
360 233 0.68
361 107 0.31
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (361 bp):
ACCTCGAACCACTCCTCAAGAGCAACATCAACTACTAACTTAGGCAAACCATCATCTAATTTCTT
GGGCACTCAAACTATCTATGGAGCCTTAACATGCTCACAAAACTTCTCCCCATTCCTAAAAACAC
AATAGTATGAGCATCAAGGAGGGAACCATGGAAATTTAACAATAACTGATGCCAAGGAACCATCC
TTGAGTGGAACATTGATAAATTAAGGCACCTTCAAAGTGGAAGACACCTCAACACAAACATTGGA
AAACGCTGGTTTTTGCCCTACTCAAGTGCATCCACACAAGTAATTTATTCAGACTGAAACTCAAA
GAATTCATATTAGGTTCCTATTTCCTAAAAATAATC
Found at i:53976 original size:2 final size:2
Alignment explanation
Indices: 53969--54000 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
53959 ATTATTATTA
53969 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
54001 GTATTTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:54017 original size:10 final size:10
Alignment explanation
Indices: 54004--54096 Score: 63
Period size: 10 Copynumber: 9.3 Consensus size: 10
53994 TATATATGTA
54004 TTTATTTATT
1 TTTATTTATT
54014 TTTA-TTATT
1 TTTATTTATT
54023 TTTA-TTATT
1 TTTATTTATT
*
54032 TTTATTCATT
1 TTTATTTATT
54042 TTT-TTACTATT
1 TTTATT--TATT
*
54053 TTCT-TTAATT
1 TT-TATTTATT
*
54063 TTTGGTTT-TT
1 TTT-ATTTATT
54073 TATTA-TTATT
1 T-TTATTTATT
54083 TATTATTTATT
1 T-TTATTTATT
54094 TTT
1 TTT
54097 CTTTCTTTTA
Statistics
Matches: 69, Mismatches: 5, Indels: 18
0.75 0.05 0.20
Matches are distributed among these distances:
9 23 0.33
10 28 0.41
11 15 0.22
12 3 0.04
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.75
Consensus pattern (10 bp):
TTTATTTATT
Found at i:54023 original size:9 final size:9
Alignment explanation
Indices: 54004--54090 Score: 70
Period size: 9 Copynumber: 9.1 Consensus size: 9
53994 TATATATGTA
54004 TTTATTTATT
1 TTTA-TTATT
54014 TTTATTATT
1 TTTATTATT
54023 TTTATTATT
1 TTTATTATT
54032 TTTATTCATT
1 TTTATT-ATT
54042 TTT-TTACTAT
1 TTTATTA-T-T
*
54052 TTTCTTTAATT
1 TTT-ATT-ATT
**
54063 TTTGGT-TT
1 TTTATTATT
54071 TTTATTATT
1 TTTATTATT
54080 ATTTATTATT
1 -TTTATTATT
54090 T
1 T
54091 ATTTTTCTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 17
0.76 0.05 0.20
Matches are distributed among these distances:
8 7 0.11
9 26 0.40
10 24 0.37
11 4 0.06
12 3 0.05
13 1 0.02
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTATTATT
Found at i:54053 original size:30 final size:28
Alignment explanation
Indices: 54012--54114 Score: 84
Period size: 30 Copynumber: 3.5 Consensus size: 28
54002 TATTTATTTA
*
54012 TTTTTATTATTTTTATTATTTTTATTCATT
1 TTTTTACTATTTTTATTATTTTT-TTC-TT
* **
54042 TTTTTACTATTTTCT-TTA-ATTTTTGGT
1 TTTTTACTATTTT-TATTATTTTTTTCTT
*
54069 TTTTTATTATTATTTATTATTTATTTTTCTT
1 TTTTTACTATT-TTTATTA-TT-TTTTTCTT
54100 TCTTTTACTATTTTT
1 T-TTTTACTATTTTT
54115 TCTATTGTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
27 12 0.21
28 7 0.12
29 3 0.05
30 15 0.26
31 11 0.19
32 9 0.16
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (28 bp):
TTTTTACTATTTTTATTATTTTTTTCTT
Found at i:54063 original size:21 final size:21
Alignment explanation
Indices: 54010--54065 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
54000 TGTATTTATT
*
54010 TATTTTTATT-A--TTTTTAT
1 TATTTTTATTAATTTTTTTAC
*
54028 TATTTTTATTCATTTTTTTAC
1 TATTTTTATTAATTTTTTTAC
54049 TATTTTCT-TTAATTTTT
1 TATTTT-TATTAATTTTT
54066 GGTTTTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 10 0.31
19 1 0.03
21 20 0.62
22 1 0.03
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (21 bp):
TATTTTTATTAATTTTTTTAC
Found at i:54203 original size:12 final size:12
Alignment explanation
Indices: 54186--54304 Score: 57
Period size: 12 Copynumber: 9.3 Consensus size: 12
54176 TATATATGTA
54186 TTTTATTATATT
1 TTTTATTATATT
54198 TTTTATTAT-TGT
1 TTTTATTATAT-T
54210 TCTTTATT-TATT
1 T-TTTATTATATT
54222 TATTTATT-TATT
1 T-TTTATTATATT
*
54234 TATTTATT-TGTT
1 T-TTTATTATATT
*** *
54246 AAATACTATATT
1 TTTTATTATATT
54258 TTATTATATATATAT
1 TT-TTAT-TATAT-T
*
54273 TACTTTATTATTTT
1 T--TTTATTATATT
54287 TTATTATTACTATT
1 TT-TTATTA-TATT
54301 TTTT
1 TTTT
54305 TGTTTGTTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 21
0.71 0.11 0.18
Matches are distributed among these distances:
11 4 0.05
12 39 0.47
13 17 0.20
14 12 0.14
15 6 0.07
16 4 0.05
17 1 0.01
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTTATTATATT
Found at i:54221 original size:4 final size:4
Alignment explanation
Indices: 54212--54242 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
54202 ATTATTGTTC
54212 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
54243 GTTAAATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:54586 original size:9 final size:9
Alignment explanation
Indices: 54547--54588 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
54537 TTTTTCTTCT
54547 TTATTATTA
1 TTATTATTA
54556 TTA-TAGTTA
1 TTATTA-TTA
54565 TTATATATATA
1 TTAT-TAT-TA
54576 TTATTATTA
1 TTATTATTA
54585 TTAT
1 TTAT
54589 ATGTTCTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
8 2 0.07
9 15 0.52
10 4 0.14
11 8 0.28
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (9 bp):
TTATTATTA
Found at i:54781 original size:25 final size:25
Alignment explanation
Indices: 54739--54799 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
54729 CGTATGTATT
*
54739 TTTTTCTTTTTTTCTCTTGATTTTA
1 TTTTTATTTTTTTCTCTTGATTTTA
*
54764 TTTTTATTTCTTTT-TCTTTATTTTA
1 TTTTTATTT-TTTTCTCTTGATTTTA
*
54789 TTTGT-TTTTTT
1 TTTTTATTTTTT
54800 ATTTTATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 3 0.09
24 3 0.09
25 22 0.69
26 4 0.12
ACGTcount: A:0.08, C:0.08, G:0.03, T:0.80
Consensus pattern (25 bp):
TTTTTATTTTTTTCTCTTGATTTTA
Found at i:54798 original size:20 final size:20
Alignment explanation
Indices: 54760--54797 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
54750 TTCTCTTGAT
54760 TTTATTTTTATTTCTTTTTC
1 TTTATTTTTATTTCTTTTTC
*
54780 TTTA-TTTTATTTGTTTTT
1 TTTATTTTTATTTCTTTTT
54798 TTATTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.11, C:0.05, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTATTTTTATTTCTTTTTC
Found at i:54802 original size:17 final size:18
Alignment explanation
Indices: 54759--54807 Score: 64
Period size: 17 Copynumber: 2.7 Consensus size: 18
54749 TTTCTCTTGA
*
54759 TTTTATTTTTATTTCTTTT
1 TTTTA-TTTTATTTCGTTT
54778 TCTTTATTTTATTT-GTTT
1 T-TTTATTTTATTTCGTTT
54796 TTTTATTTTATT
1 TTTTATTTTATT
54808 CATTTTCACT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 11 0.39
18 4 0.14
19 9 0.32
20 4 0.14
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.82
Consensus pattern (18 bp):
TTTTATTTTATTTCGTTT
Found at i:54813 original size:17 final size:17
Alignment explanation
Indices: 54759--54813 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
54749 TTTCTCTTGA
*
54759 TTTTATTTTTATTTCTTTT
1 TTTTA-TTTTA-TTCATTT
**
54778 TCTTTATTTTATTTGTTT
1 T-TTTATTTTATTCATTT
54796 TTTTATTTTATTCATTT
1 TTTTATTTTATTCATTT
54813 T
1 T
54814 CACTTTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 15 0.48
18 6 0.19
19 6 0.19
20 4 0.13
ACGTcount: A:0.13, C:0.05, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTATTTTATTCATTT
Found at i:58994 original size:98 final size:95
Alignment explanation
Indices: 58734--58994 Score: 289
Period size: 95 Copynumber: 2.7 Consensus size: 95
58724 ATATTATAAT
* ** * * *
58734 ATTAT-ATATACAATAAAGCTTAAACTGTCCCTCTAAAGCAATTGGTTAAATGCCCTAGCTTTAT
1 ATTATAATATACAATAAAACTCGAATTGTCCCTCTAGAGCAATTGGTTAAATGCCCGAGCTTTAT
58798 GGATAAGATTCAACTAGCATGATAAAGGTG
66 GGATAAGATTCAACTAGCATGATAAAGGTG
* * *
58828 ATTATAATATACAATAAAACTCGAATTGTCCCTCTAGAGCAATTGGTTAAACGCCTTG-GTTTTA
1 ATTATAATATACAATAAAACTCGAATTGTCCCTCTAGAGCAATTGGTTAAATGCC-CGAGCTTTA
* * *
58892 TGGATAATATTCAGCTAGCCTGATAAAGGTG
65 TGGATAAGATTCAACTAGCATGATAAAGGTG
* * *
58923 ATTATAATAT-CTATACAA-T-GATATTGAGCTATCCCTCTAGAGTAATTGGTTAAATGCCCGAG
1 ATTATAATATACAATAAAACTCGA-ATT--G---TCCCTCTAGAGCAATTGGTTAAATGCCCGAG
58985 CTTTATGGAT
60 CTTTATGGAT
58995 CCAACTAGCC
Statistics
Matches: 140, Mismatches: 18, Indels: 14
0.81 0.10 0.08
Matches are distributed among these distances:
92 2 0.01
93 4 0.03
94 11 0.08
95 87 0.62
97 1 0.01
98 35 0.25
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (95 bp):
ATTATAATATACAATAAAACTCGAATTGTCCCTCTAGAGCAATTGGTTAAATGCCCGAGCTTTAT
GGATAAGATTCAACTAGCATGATAAAGGTG
Found at i:60047 original size:80 final size:80
Alignment explanation
Indices: 59857--61047 Score: 1177
Period size: 80 Copynumber: 14.5 Consensus size: 80
59847 TGACCTGTTA
* * * * * * *
59857 AAAGACCTTTGAGTTCGATTACACTCAACTCAAAGGAATATCCAATTGATAGCATAACTCAAGGC
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-CATTTG-CAGCATAACTCAAGGT
*
59922 GAGAAGGGTTATCTGTCAAC
64 AAGAAGGGTTATCTG-C--C
* * * * * * *
59942 CAAGACCTTCAAGTTCAATTACACTCAGCTCAAAGGCACATTATTTGTAGCATAACTAAATGTAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGTAA
*
60007 GAAGGGTTACCTGCC
66 GAAGGGTTATCTGCC
* * * * *
60022 AAAGACCCTCGAGTTTGATTACACTCAGCTCAAAGGCACATCATTTGCAGAATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGTAA
* *
60087 GAAGGGATATCTACCAAC
66 GAAGGGTTATCT-GC--C
* ** * * *
60105 AAAACACCTTCTCGGTCGATTACACTCAGCTTAAAGGCATATCATTTGCAGCATAACTCAA-GTC
1 -AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGT-
*
60169 AAGATGGGTTATCTGCC
64 AAGAAGGGTTATCTGCC
* * * *
60186 AAAGACCTTTGAGTTCAATTACACTCAGCTCAAAGGCACATCATTTGCAACATAACTCAAGGAAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGTAA
* * * *
60251 AAAAGGCTATCTTCCAAC
66 GAAGGGTTATC-TGC--C
* * * ** * *
60269 AAAAAACCTTCGAGTTCGATTACACTCAGCTCAAACGCACGTCATTTGCATTATAGCTCAAGGCA
1 -AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGTA
* *
60334 AGAAGTGCTATCTGCC
65 AGAAGGGTTATCTGCC
* * * * *
60350 GAAGACCTTTGAGTTTGATTACACTCAGCTCAAAGGCACATCATTTACAACATAACTCAAGGCT-
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGG-TA
60414 AGAAGGGTTATCTGTCAAC
65 AGAAGGGTTATCTG-C--C
* * * ** *
60433 AAAGACCTTCGAGTTCAATTACACTCAGCTTAAAGGCACATTATTTGCAATATAGCTCAAGGTAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGTAA
* * *
60498 GGAGCGCTATCTGCC
66 GAAGGGTTATCTGCC
* * * *
60513 AAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAATTTAAGGGT-
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA-GGTA
* *
60577 AGAAAGGTTATTTGTCAAC
65 AGAAGGGTTATCTG-C--C
* * * * *
60596 AAATACCTTCTAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTTAAGGCAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGTAA
*
60661 GAAGGGTTATCTACC
66 GAAGGGTTATCTGCC
* **
60676 AAAGACCTCCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTATAGCATAACTCAAGGCT-
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGG-TA
60740 AGAAGGGTTATCTGTCAAC
65 AGAAGGGTTATCTG-C--C
* *
60759 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGTAA
* *
60824 GAAGGGCTATCTGCT
66 GAAGGGTTATCTGCC
* * *
60839 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATATCATTTACAGCATAACTCAA-GTCT
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGT-A
*
60903 AGAAGGGTTATCTGTCAAT
65 AGAAGGGTTATCTG-C--C
* * * *
60922 AAAGACTTTCAAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCTGCATAGCTCAAGGTAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGTAA
* * *
60987 GGAGGGCTACCTGTCATC
66 GAAGGGTTATCTG-C--C
* ** * * *
61005 AAATACCTTCGAGTTTAATTACATTCAGCTTAAAGGCATATCA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCA
61048 AATTTATAAC
Statistics
Matches: 913, Mismatches: 163, Indels: 62
0.80 0.14 0.05
Matches are distributed among these distances:
79 1 0.00
80 387 0.42
81 13 0.01
82 7 0.01
83 339 0.37
84 132 0.14
85 34 0.04
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (80 bp):
AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGTAA
GAAGGGTTATCTGCC
Found at i:60529 original size:163 final size:163
Alignment explanation
Indices: 59857--61047 Score: 1459
Period size: 163 Copynumber: 7.3 Consensus size: 163
59847 TGACCTGTTA
* * * * * *
59857 AAAGACCTTTGAGTTCGATTACACTCAACTCAAAGGAATATCCAATTGATAGCATAACTCAAGGC
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-C-ATTTACAGCATAACTCAAGGC
* * * * *
59922 GAGAAGGGTTATCTGTCAACCAAGACCTTCAAGTTCAATTACACTCAGCTCAAAGGCACATTATT
64 TAGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATT
* * * * * *
59987 TGTAGCATAACTAAATGTAAGAAGGGTTACCTGCC
129 TGCAGCATAGCTCAAGGTAAGAAGGGCTATCTGCC
* * * * * *
60022 AAAGACCCTCGAGTTTGATTACACTCAGCTCAAAGGCACATCATTTGCAGAATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTA
* ** * ** * * *
60087 GAAGGGATATCTACCAACAAAACACCTTCTCGGTCGATTACACTCAGCTTAAAGGCATATCATTT
66 GAAGGGTTATCTGTCAAC-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTT
* * *
60152 GCAGCATAACTCAA-GTCAAGATGGGTTATCTGCC
130 GCAGCATAGCTCAAGGT-AAGAAGGGCTATCTGCC
* * * * **
60186 AAAGACCTTTGAGTTCAATTACACTCAGCTCAAAGGCACATCATTTGCAACATAACTCAAGGAAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTA
* * * * * *
60251 AAAAGGCTATCT-TCCAACAAAAAACCTTCGAGTTCGATTACACTCAGCTCAAACGCACGTCATT
66 GAAGGGTTATCTGT-CAAC-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATT
** * *
60315 TGCATTATAGCTCAAGGCAAGAAGTGCTATCTGCC
129 TGCAGCATAGCTCAAGGTAAGAAGGGCTATCTGCC
* * * *
60350 GAAGACCTTTGAGTTTGATTACACTCAGCTCAAAGGCACATCATTTACAACATAACTCAAGGCTA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTA
* * *
60415 GAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCAATTACACTCAGCTTAAAGGCACATTATTTG
66 GAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTG
** * *
60480 CAATATAGCTCAAGGTAAGGAGCGCTATCTGCC
131 CAGCATAGCTCAAGGTAAGAAGGGCTATCTGCC
* * * *
60513 AAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAATTTAAGGGTA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTA
* * * *
60578 GAAAGGTTATTTGTCAACAAATACCTTCTAGTTCGATTACACTCAGCTCAAAGGCACATCATTTG
66 GAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTG
* * * *
60643 CAGCATAGCTTAAGGCAAGAAGGGTTATCTACC
131 CAGCATAGCTCAAGGTAAGAAGGGCTATCTGCC
* *
60676 AAAGACCTCCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTATAGCATAACTCAAGGCTA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTA
60741 GAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTG
66 GAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTG
* *
60806 CAGCATAGCTCAAGGCAAGAAGGGCTATCTGCT
131 CAGCATAGCTCAAGGTAAGAAGGGCTATCTGCC
* *
60839 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATATCATTTACAGCATAACTCAAGTCTA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTA
* * *
60904 GAAGGGTTATCTGTCAATAAAGACTTTCAAGTTCGATTACACTCAGCTCAAAGGCACATCATTTG
66 GAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTG
* * *
60969 CTGCATAGCTCAAGGTAAGGAGGGCTACCTGTCATC
131 CAGCATAGCTCAAGGTAAGAAGGGCTATCTG-C--C
* ** * * *
61005 AAATACCTTCGAGTTTAATTACATTCAGCTTAAAGGCATATCA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCA
61048 AATTTATAAC
Statistics
Matches: 892, Mismatches: 126, Indels: 15
0.86 0.12 0.01
Matches are distributed among these distances:
163 545 0.61
164 272 0.30
165 37 0.04
166 38 0.04
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (163 bp):
AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAACTCAAGGCTA
GAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTG
CAGCATAGCTCAAGGTAAGAAGGGCTATCTGCC
Found at i:63029 original size:17 final size:17
Alignment explanation
Indices: 63004--63038 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
62994 TAAATTCTTT
63004 AATTCGGAATGAATCAA
1 AATTCGGAATGAATCAA
*
63021 AATTTGGAATGAATCAA
1 AATTCGGAATGAATCAA
63038 A
1 A
63039 TCTCCTCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (17 bp):
AATTCGGAATGAATCAA
Found at i:70807 original size:13 final size:13
Alignment explanation
Indices: 70786--70820 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
70776 TGTATCTTCA
70786 TTTCACTTTTTAC
1 TTTCACTTTTTAC
*
70799 TTTCTCTTTTTAC
1 TTTCACTTTTTAC
*
70812 TTTAACTTT
1 TTTCACTTT
70821 CTTTCATCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.14, C:0.20, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTCACTTTTTAC
Found at i:79233 original size:14 final size:14
Alignment explanation
Indices: 79214--79241 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79204 ATCTAATACT
79214 AATAGAATAGAAAA
1 AATAGAATAGAAAA
79228 AATAGAATAGAAAA
1 AATAGAATAGAAAA
79242 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:79277 original size:23 final size:22
Alignment explanation
Indices: 79228--79283 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
79218 GAATAGAAAA
*
79228 AATAGAATAGAAAATACTAATAT
1 AATAGAA-AGAAAATACTAATAG
79251 AATAGAAAGAATAATA-TAATAGG
1 AATAGAAAGAA-AATACTAATA-G
79274 AATA-AAAGAA
1 AATAGAAAGAA
79284 CTGTCTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 15 0.50
23 15 0.50
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.21
Consensus pattern (22 bp):
AATAGAAAGAAAATACTAATAG
Found at i:79752 original size:36 final size:40
Alignment explanation
Indices: 79699--79771 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 40
79689 GAATGATGGA
*
79699 AGGGAATAAAATAAAATAA-AAA-A-G-AAATAAAAAAAG
1 AGGGAAAAAAATAAAATAATAAATAGGTAAATAAAAAAAG
79735 AGGGAAAAATAAT-AAATAATAAATAGGTAAATAAAAA
1 AGGGAAAAA-AATAAAATAATAAATAGGTAAATAAAAA
79772 TGAAGTAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
36 14 0.45
37 6 0.19
38 1 0.03
39 1 0.03
40 9 0.29
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.15
Consensus pattern (40 bp):
AGGGAAAAAAATAAAATAATAAATAGGTAAATAAAAAAAG
Found at i:83908 original size:18 final size:18
Alignment explanation
Indices: 83885--83922 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
83875 ATTTGCAAAT
83885 TTTGAATTAGTCGATTTA
1 TTTGAATTAGTCGATTTA
83903 TTTGAATTAGTCGATTTA
1 TTTGAATTAGTCGATTTA
83921 TT
1 TT
83923 AGATTTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.53
Consensus pattern (18 bp):
TTTGAATTAGTCGATTTA
Found at i:85155 original size:19 final size:20
Alignment explanation
Indices: 85114--85157 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
85104 TATTTGTTTC
* * *
85114 TTTTTATTATTTTTTATTCA
1 TTTTTACTATTTTCTATTAA
85134 TTTTTACTATTTTCT-TTAA
1 TTTTTACTATTTTCTATTAA
85153 TTTTT
1 TTTTT
85158 GGTTTTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTTACTATTTTCTATTAA
Found at i:85186 original size:20 final size:18
Alignment explanation
Indices: 85163--85201 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
85153 TTTTTGGTTT
*
85163 TTTATTATTATTTATTTTTC
1 TTTATT-TTACTT-TTTTTC
85183 TTTATTTTACTTTTTTTC
1 TTTATTTTACTTTTTTTC
85201 T
1 T
85202 ATTGTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 5 0.28
20 6 0.33
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTATTTTACTTTTTTTC
Found at i:85261 original size:3 final size:3
Alignment explanation
Indices: 85253--85324 Score: 51
Period size: 3 Copynumber: 23.7 Consensus size: 3
85243 TATTTTACCT
* * *
85253 TTA TTA TTA TTA TTA TTA TTA TTT TTA CCTA ATA TTA -TA TATA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA T-TA T-TA
*
85300 TT- TTA TTA TCT- TTT TTA TTA TTA TT
1 TTA TTA TTA T-TA TTA TTA TTA TTA TT
85325 GTTCTTTATT
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
2 5 0.09
3 42 0.75
4 9 0.16
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:85841 original size:9 final size:9
Alignment explanation
Indices: 85827--85941 Score: 76
Period size: 9 Copynumber: 13.1 Consensus size: 9
85817 GTCATTACTA
85827 TCTTTATTT
1 TCTTTATTT
*
85836 TCTTTATCT
1 TCTTTATTT
* *
85845 TATGTATTT
1 TCTTTATTT
**
85854 T-TTTCCTT
1 TCTTTATTT
85862 T-TTTATTT
1 TCTTTATTT
**
85870 TCTTGGTTT
1 TCTTTATTT
*
85879 TCTTGATTT
1 TCTTTATTT
*
85888 TATTT-TTT
1 TCTTTATTT
* *
85896 TATTTCTTT
1 TCTTTATTT
85905 TGCTTTATTT
1 T-CTTTATTT
* *
85915 TATTTGTTT
1 TCTTTATTT
85924 T-TTTATTT
1 TCTTTATTT
85932 TCTTTATTT
1 TCTTTATTT
85941 T
1 T
85942 ATTCATTTTT
Statistics
Matches: 83, Mismatches: 19, Indels: 8
0.75 0.17 0.07
Matches are distributed among these distances:
8 26 0.31
9 50 0.60
10 7 0.08
ACGTcount: A:0.10, C:0.09, G:0.05, T:0.76
Consensus pattern (9 bp):
TCTTTATTT
Found at i:85898 original size:31 final size:30
Alignment explanation
Indices: 85860--85935 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
85850 ATTTTTTTCC
*
85860 TTTTTTATTTTCTTGGTTT-TCTTGATTTTAT
1 TTTTTTATTTTCTTGCTTTAT-TTGA-TTTAT
* * *
85891 TTTTTTATTTCTTTTGCTTTATTTTATTTGT
1 TTTTTTATTT-TCTTGCTTTATTTGATTTAT
85922 TTTTTTATTTTCTT
1 TTTTTTATTTTCTT
85936 TATTTTATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
30 3 0.08
31 24 0.63
32 10 0.26
33 1 0.03
ACGTcount: A:0.09, C:0.07, G:0.07, T:0.78
Consensus pattern (30 bp):
TTTTTTATTTTCTTGCTTTATTTGATTTAT
Found at i:85905 original size:26 final size:26
Alignment explanation
Indices: 85876--85944 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
85866 ATTTTCTTGG
* *
85876 TTTTCTTGATTTTATTT-TTTTATTTC
1 TTTTCTTTATTTTATTTGTTTT-TTTA
85902 TTTTGCTTTATTTTATTTGTTTTTTTA
1 TTTT-CTTTATTTTATTTGTTTTTTTA
85929 TTTTCTTTATTTTATT
1 TTTTCTTTATTTTATT
85945 CATTTTTCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 16 0.41
27 19 0.49
28 4 0.10
ACGTcount: A:0.12, C:0.06, G:0.04, T:0.78
Consensus pattern (26 bp):
TTTTCTTTATTTTATTTGTTTTTTTA
Found at i:85917 original size:19 final size:17
Alignment explanation
Indices: 85893--85932 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
85883 GATTTTATTT
85893 TTTTATTTCTTTTGCTTTA
1 TTTTATTTCTTTT--TTTA
*
85912 TTTTATTTGTTTTTTTA
1 TTTTATTTCTTTTTTTA
85929 TTTT
1 TTTT
85933 CTTTATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
19 12 0.60
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.80
Consensus pattern (17 bp):
TTTTATTTCTTTTTTTA
Found at i:85943 original size:31 final size:31
Alignment explanation
Indices: 85829--85944 Score: 78
Period size: 31 Copynumber: 3.6 Consensus size: 31
85819 CATTACTATC
**
85829 TTTATTTTCTTTATCTTATGTATTTT-TTTCCTTT
1 TTTATTTTCTTTA--TT-T-TATTTTATTTATTTT
** * *
85863 TTTATTTTCTTGGTTTT-CTTGATTTTATTTT
1 TTTATTTTCTTTATTTTATTTTA-TTTATTTT
*
85894 TTTA-TTTCTTT-TGCTTTATTTTATTTGTTTT
1 TTTATTTTCTTTAT--TTTATTTTATTTATTTT
85925 TTTATTTTCTTTATTTTATT
1 TTTATTTTCTTTATTTTATT
85945 CATTTTTCAC
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
29 3 0.05
30 7 0.11
31 31 0.48
32 12 0.18
33 1 0.02
34 11 0.17
ACGTcount: A:0.11, C:0.08, G:0.05, T:0.76
Consensus pattern (31 bp):
TTTATTTTCTTTATTTTATTTTATTTATTTT
Found at i:85950 original size:26 final size:25
Alignment explanation
Indices: 85876--85951 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 25
85866 ATTTTCTTGG
* * *
85876 TTTTCTTGATTTTATTTTTTTATTTC
1 TTTTCTTTATTTTATTATTTT-TTTA
*
85902 TTTTGCTTTATTTTATTTGTTTTTTTA
1 TTTT-CTTTATTTTA-TTATTTTTTTA
85929 TTTTCTTTATTTTATTCATTTTT
1 TTTTCTTTATTTTATT-ATTTTT
85952 CACTTTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.05
26 19 0.44
27 16 0.37
28 6 0.14
ACGTcount: A:0.12, C:0.07, G:0.04, T:0.78
Consensus pattern (25 bp):
TTTTCTTTATTTTATTATTTTTTTA
Found at i:85958 original size:26 final size:28
Alignment explanation
Indices: 85901--85958 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 28
85891 TTTTTTATTT
** *
85901 CTTTTGCTTTATTTTATTTGTTTTTTTA
1 CTTTTGCTTTATTTTATTTCATTTTTCA
85929 -TTTT-CTTTATTTTA-TTCATTTTTCA
1 CTTTTGCTTTATTTTATTTCATTTTTCA
85954 CTTTT
1 CTTTT
85959 TTTCCTTCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 8 0.31
26 14 0.54
27 4 0.15
ACGTcount: A:0.12, C:0.10, G:0.03, T:0.74
Consensus pattern (28 bp):
CTTTTGCTTTATTTTATTTCATTTTTCA
Found at i:90079 original size:95 final size:95
Alignment explanation
Indices: 89914--90169 Score: 327
Period size: 95 Copynumber: 2.7 Consensus size: 95
89904 ATAATATTTT
* * * * *
89914 ATATACAATAAAGCTTAAGCTATCCCTCTAAAGCAATTGGTTAAAC-ACCTCAACTTTATGGATA
1 ATATACAATAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCT-AGCTTTATGGATA
* *
89978 AGATTCAGCTAGCCTGGTAAAGGTGATTATA
65 AGATTCAGCTAGCCTGATAAAAGTGATTATA
* * *
90009 ATATACAATAAAGCTTGAGTTGTCCCTCTAGAGAAATTGATTAAACGCCCTAGCTTTATGGATAA
1 ATATACAATAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCTAGCTTTATGGATAA
*
90074 TATTCAGCTAGCCTGATAAAAGTGATTATA
66 GATTCAGCTAGCCTGATAAAAGTGATTATA
* * *
90104 ATAT-CTATACAACGATATTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCCAGCTTTATGG
1 ATATACAATA-AA-G--CTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCTAGCTTTATGG
90168 AT
62 AT
90170 CCAACTAGCC
Statistics
Matches: 139, Mismatches: 17, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
94 4 0.03
95 86 0.62
96 4 0.03
98 45 0.32
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (95 bp):
ATATACAATAAAGCTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCTAGCTTTATGGATAA
GATTCAGCTAGCCTGATAAAAGTGATTATA
Found at i:91211 original size:80 final size:81
Alignment explanation
Indices: 91014--92154 Score: 1047
Period size: 80 Copynumber: 13.9 Consensus size: 81
91004 TAACCTGTTG
* * *
91014 AAAGACCTTCGAGTTCGTTTACACTCAGCTCAAAGACACATCCAATTGTCAGCATAACTCAAGGC
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-CATTTG-CAGCATAACTCAAGGC
* * *
91079 GAGAAGGGTTATCTGTCAA
64 AAGAAGGGCTATCTG-CAC
* * * * * * * *
91098 ACAAGACCTTCAAGTTTGATTACACTTAACTCAAAGGCACATTATTTGTATCATAGCTCAAGGCA
1 A-AAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCA
91163 AGAAGGGCTATCTGC-C
65 AGAAGGGCTATCTGCAC
* * *
91179 AAAGACCTTCGAGTTCGATTACACTCACCTCAAAGGCACATCATTTGTAGCATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAA
* *
91244 GAAGGGATATCTACCAAC
66 GAAGGGCTATCT-GC-AC
* * * * * * *
91262 AAAAGACCTTAGAGGTCGATTACACTCATCTTAAAGGCACATCATTGGTAGCATAACTCAAGGAA
1 -AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCA
91327 AGAAGGGCTATCTGCCAAC
65 AGAAGGGCTATCTG-C-AC
* * *
91346 AAAAGACCTTCGAGTTCGATTATACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGACA
1 -AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCA
* *
91411 ATAAGGGCTATCCGC-C
65 AGAAGGGCTATCTGCAC
* * * * * * * *
91427 GAAGACCTTTGAGTTCGATTACACTTAGCTTAAAGACACATCATTTACAGTATAACTCAAGGCTA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAA
*
91492 GAAGGGTTATTTCT-CAAC
66 GAAGGGCTA--TCTGC-AC
* * * * *
91510 AAAGACCTTCGAGTTCGATTATACTCAGCTCAAAGGTACATTATTTTGCAGCATAACTTAAGGAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCA-TTTGCAGCATAACTCAAGGCA
* *
91575 AGAAGGGCTATATGC-T
65 AGAAGGGCTATCTGCAC
* * * * * ** ** ** *
91591 AATGGCCTTCTAGTTTGATTACACTCAACTTTAAGGCACATCATTTTTAATATAACTCAAGGCTA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAA
* *
91656 GAAGGGTTATCTATCAAC
66 GAAGGGCTATCT-GC-AC
* *
91674 AAAGACCTTCGAGTTC-ATTTACACTCAGCTCAAAGGCACATTATTTGCAGCATAGCTCAAGGCA
1 AAAGACCTTCGAGTTCGA-TTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCA
* *
91738 AGAATGACTATCTGC-C
65 AGAAGGGCTATCTGCAC
* * * * * * * * *
91754 AGAGACCTCCGAGTTTGATTACACTCAGTTAAAAGACACATCATTTACATCATAACTCAAGGCTA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAA
* * *
91819 GAAGAGTTATCTATCAAC
66 GAAGGGCTATCT-GC-AC
* ** *
91837 AAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACATCATTTTTAGCATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAA
*
91902 GAAGGGCTATCAGC-C
66 GAAGGGCTATCTGCAC
* * * * ***
91917 AAAGACCTTCAAGTTTGATTACACTCAGCTCAAAGGCACATCATTTACAACATAACTCAAGATTA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAA
*
91982 GAAGGGTTATCTGTCAAC
66 GAAGGGCTATCTG-C-AC
* * **
92000 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGTATAGCTCAAAGAAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTC-AAGGCA
* * * *
92065 AGAGGGGGTACCTTTCATC
65 AGAAGGGCTATC-TGCA-C
* * * * *
92084 AAATACCTTCGAGTTCGATTACATTCAGCTCGAAA-GCATATCAAATTTACAACATAACTCAAGG
1 AAAGACCTTCGAGTTCGATTACACTCAGCTC-AAAGGCACATC--ATTTGCAGCATAACTCAAGG
*
92148 CTAGAAG
63 CAAGAAG
92155 AGTTATTTAT
Statistics
Matches: 853, Mismatches: 175, Indels: 57
0.79 0.16 0.05
Matches are distributed among these distances:
80 285 0.33
81 41 0.05
82 8 0.01
83 242 0.28
84 220 0.26
85 45 0.05
86 12 0.01
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (81 bp):
AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAAGGCAA
GAAGGGCTATCTGCAC
Found at i:91830 original size:163 final size:161
Alignment explanation
Indices: 91014--92171 Score: 1144
Period size: 163 Copynumber: 7.0 Consensus size: 161
91004 TAACCTGTTG
* * * *
91014 AAAGACCTTCGAGTTCGTTTACACTCAGCTCAAAGACACATCCAATTGTCAGCATAACTCAAGGC
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-CATTTG-CAGCATAGCTCAAGGC
* * * * * * *
91079 GAGAAGGGTTATCTGTCAAACAAGACCTTCAAGTTTGATTACACTTAACTCAAAGGCACATTATT
64 AAGAAGGGCTATCTG-C---CAAGACCTTCGAGTTTGATTACAC-TCAGTTAAAGGCACATCATT
** * * * *
91144 TGTATCATAGCTCAAGGCAAGAAGGGCTATCT-GC--C
124 TACATCATAACTCAAGGCTAGAAGGGTTATCTATCAAC
* *
91179 AAAGACCTTCGAGTTCGATTACACTCACCTCAAAGGCACATCATTTGTAGCATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAA
* * * * * * *
91244 GAAGGGATATCTACCAACAAAAGACCTTAGAGGTCGATTACACTCATCTTAAAGGCACATCATTG
66 GAAGGGCTATCT-GC--C--AAGACCTTCGAGTTTGATTACACTCA-GTTAAAGGCACATCATTT
** * ** * **
91309 GTAGCATAACTCAAGGAAAGAAGGGCTATCTGCCAAC
125 ACATCATAACTCAAGGCTAGAAGGGTTATCTATCAAC
* *
91346 AAAAGACCTTCGAGTTCGATTATACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGACA
1 -AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCA
* * * * * *
91411 ATAAGGGCTATCCGCCGAAGACCTTTGAGTTCGATTACACTTAGCTTAAAGACACATCATTTACA
65 AGAAGGGCTATCTGCC-AAGACCTTCGAGTTTGATTACACTCAG-TTAAAGGCACATCATTTACA
* *
91476 GT-ATAACTCAAGGCTAGAAGGGTTATTTCTCAAC
128 -TCATAACTCAAGGCTAGAAGGGTTATCTATCAAC
* * * * * *
91510 AAAGACCTTCGAGTTCGATTATACTCAGCTCAAAGGTACATTATTTTGCAGCATAACTTAAGGAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCA-TTTGCAGCATAGCTCAAGGCA
* * * * * *
91575 AGAAGGGCTATATGCTAATGGCCTTCTAGTTTGATTACACTCAACTTTAAGGCACATCATTTTTA
65 AGAAGGGCTATCTGCCAA-GACCTTCGAGTTTGATTACACTC-AGTTAAAGGCACATCA--TTTA
91640 -AT-ATAACTCAAGGCTAGAAGGGTTATCTATCAAC
126 CATCATAACTCAAGGCTAGAAGGGTTATCTATCAAC
*
91674 AAAGACCTTCGAGTTC-ATTTACACTCAGCTCAAAGGCACATTATTTGCAGCATAGCTCAAGGCA
1 AAAGACCTTCGAGTTCGA-TTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCA
* * * *
91738 AGAATGACTATCTGCCAGAGACCTCCGAGTTTGATTACACTCAGTTAAAAGACACATCATTTACA
65 AGAAGGGCTATCTGCCA-AGACCTTCGAGTTTGATTACACTCAGTT-AAAGGCACATCATTTACA
*
91803 TCATAACTCAAGGCTAGAAGAGTTATCTATCAAC
128 TCATAACTCAAGGCTAGAAGGGTTATCTATCAAC
* **
91837 AAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGCACATCATTTTTAGCATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAA
* * * *
91902 GAAGGGCTATCAGCCAAAGACCTTCAAGTTTGATTACACTCAGCTCAAAGGCACATCATTTACAA
66 GAAGGGCTATCTGCC-AAGACCTTCGAGTTTGATTACACTCAG-TTAAAGGCACATCATTTACAT
** *
91967 CATAACTCAAGATTAGAAGGGTTATCTGTCAAC
129 CATAACTCAAGGCTAGAAGGGTTATCTATCAAC
* **
92000 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGTATAGCTCAAAGAAA
1 AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTC-AAGGCA
* * * * * * * * *
92065 AGAGGGGGTACCTTTCATCAAATACCTTCGAGTTCGATTACATTCAGCTCGAAA-GCATATCAAA
65 AGAAGGGCTATC-TGC--C-AAGACCTTCGAGTTTGATTACACTCAG-T-TAAAGGCACATC--A
* * * *
92129 TTTACAACATAACTCAAGGCTAGAAGAGTTATTTATCCAC
122 TTTACATCATAACTCAAGGCTAGAAGGGTTATCTATCAAC
92169 AAA
1 AAA
92172 AACTGTTGAG
Statistics
Matches: 843, Mismatches: 120, Indels: 56
0.83 0.12 0.05
Matches are distributed among these distances:
161 4 0.00
162 8 0.01
163 360 0.43
164 278 0.33
165 43 0.05
166 4 0.00
167 35 0.04
168 73 0.09
169 38 0.05
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (161 bp):
AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAA
GAAGGGCTATCTGCCAAGACCTTCGAGTTTGATTACACTCAGTTAAAGGCACATCATTTACATCA
TAACTCAAGGCTAGAAGGGTTATCTATCAAC
Found at i:94625 original size:9 final size:9
Alignment explanation
Indices: 94592--94766 Score: 58
Period size: 9 Copynumber: 18.6 Consensus size: 9
94582 ATGCATATAC
94592 ATTTTATTT
1 ATTTTATTT
*
94601 ATTCACTTACTT
1 ATT---TTATTT
94613 ATTTTATTT
1 ATTTTATTT
94622 ATTTT-TTT
1 ATTTTATTT
*
94630 TTGTTTATTT
1 AT-TTTATTT
94640 ATTTTTATCTT
1 A-TTTTAT-TT
94651 GCATTTATATATAT
1 --ATTT-TAT-T-T
94665 ATTTTCA-TT
1 ATTTT-ATTT
* *
94674 ATTGTCTTT
1 ATTTTATTT
*
94683 ATTTT-CTT
1 ATTTTATTT
* *
94691 ATCTTATGT
1 ATTTTATTT
94700 ATTTT-TTCT
1 ATTTTATT-T
94709 -TTTT-TTT
1 ATTTTATTT
*
94716 ACTTTTTTTT
1 A-TTTTATTT
* *
94726 ATTTTCTTG
1 ATTTTATTT
*
94735 ATTTTTTTT
1 ATTTTATTT
94744 ATTTCT-TTT
1 ATTT-TATTT
*
94753 CTTTTATTT
1 ATTTTATTT
94762 ATTTT
1 ATTTT
94767 TTTCTTTATT
Statistics
Matches: 126, Mismatches: 20, Indels: 40
0.68 0.11 0.22
Matches are distributed among these distances:
7 1 0.01
8 18 0.14
9 67 0.53
10 14 0.11
11 4 0.03
12 16 0.13
13 5 0.04
14 1 0.01
ACGTcount: A:0.17, C:0.08, G:0.03, T:0.73
Consensus pattern (9 bp):
ATTTTATTT
Found at i:94721 original size:17 final size:18
Alignment explanation
Indices: 94709--94797 Score: 85
Period size: 18 Copynumber: 4.9 Consensus size: 18
94699 TATTTTTTCT
94709 TTTTTTTACTTTTTTTTA
1 TTTTTTTACTTTTTTTTA
*
94727 TTTTCTTGA-TTTTTTTTA
1 TTTT-TTTACTTTTTTTTA
*
94745 TTTCTTTT-CTTTTATTTA
1 TTT-TTTTACTTTTTTTTA
*
94763 TTTTTTT-CTTTATTTTA
1 TTTTTTTACTTTTTTTTA
*
94780 TTCATTTTCACTTTTTTT
1 TT--TTTTTACTTTTTTT
94798 CCTTTTGACA
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
17 14 0.24
18 29 0.50
19 8 0.14
20 7 0.12
ACGTcount: A:0.11, C:0.09, G:0.01, T:0.79
Consensus pattern (18 bp):
TTTTTTTACTTTTTTTTA
Found at i:94752 original size:22 final size:22
Alignment explanation
Indices: 94718--94773 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
94708 TTTTTTTTAC
*
94718 TTTTTTTTATTTTC-TTGATTT
1 TTTTTTTTCTTTTCTTTGATTT
*
94739 TTTTTATTTCTTTTCTTTTATTT
1 TTTTT-TTTCTTTTCTTTGATTT
*
94762 ATTTTTTTCTTT
1 TTTTTTTTCTTT
94774 ATTTTATTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.17
22 15 0.50
23 10 0.33
ACGTcount: A:0.09, C:0.07, G:0.02, T:0.82
Consensus pattern (22 bp):
TTTTTTTTCTTTTCTTTGATTT
Found at i:98265 original size:26 final size:26
Alignment explanation
Indices: 98229--98279 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
98219 TGACCTTTAT
98229 AGTGTTAAGGATGGAGCCTAGCTTAC
1 AGTGTTAAGGATGGAGCCTAGCTTAC
98255 AGTGTTAAGGATGGAGCCTAGCTTA
1 AGTGTTAAGGATGGAGCCTAGCTTA
98280 AGAGTCTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.27
Consensus pattern (26 bp):
AGTGTTAAGGATGGAGCCTAGCTTAC
Found at i:103959 original size:15 final size:15
Alignment explanation
Indices: 103939--103979 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
103929 CTTCATGGGG
*
103939 TAAGAAGACAACGTC
1 TAAGAAGAAAACGTC
103954 TAAGAAGAAAACGTC
1 TAAGAAGAAAACGTC
*
103969 AAAGAAGAAAA
1 TAAGAAGAAAA
103980 TGGTTTGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.59, C:0.12, G:0.20, T:0.10
Consensus pattern (15 bp):
TAAGAAGAAAACGTC
Found at i:107631 original size:26 final size:26
Alignment explanation
Indices: 107601--107692 Score: 71
Period size: 26 Copynumber: 3.6 Consensus size: 26
107591 TGTTGAAAAA
*
107601 GAAGAGGAGAAAGGAGAAGGGACACC
1 GAAGAGGAAAAAGGAGAAGGGACACC
* * * * **
107627 GAAGACGAAAAAAGAGAA-AGAAAAG
1 GAAGAGGAAAAAGGAGAAGGGACACC
* **
107652 GAATAGGGTAAAGGAGAAGGGACACC
1 GAAGAGGAAAAAGGAGAAGGGACACC
107678 GCAA-AGGAAAAAGGA
1 G-AAGAGGAAAAAGGA
107693 AGAGGAGAAA
Statistics
Matches: 46, Mismatches: 18, Indels: 4
0.68 0.26 0.06
Matches are distributed among these distances:
25 16 0.35
26 28 0.61
27 2 0.04
ACGTcount: A:0.53, C:0.09, G:0.36, T:0.02
Consensus pattern (26 bp):
GAAGAGGAAAAAGGAGAAGGGACACC
Found at i:108276 original size:12 final size:12
Alignment explanation
Indices: 108256--108286 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
108246 TAATCCCAGG
*
108256 TTTGTTTTTTCA
1 TTTGATTTTTCA
108268 TTTGATTTTTCA
1 TTTGATTTTTCA
108280 TTTGATT
1 TTTGATT
108287 ATCAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.06, G:0.10, T:0.71
Consensus pattern (12 bp):
TTTGATTTTTCA
Found at i:109960 original size:85 final size:84
Alignment explanation
Indices: 109847--110154 Score: 402
Period size: 85 Copynumber: 3.6 Consensus size: 84
109837 ATCTTTTTAA
* * * * * *
109847 ATGACGTGTGCTTCAATGACACGCAATGTAGGTCATATATGCGTGTCATATATTTATGACACACA
1 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
* *
109912 AATGTATGTCAAACAGATTT
66 AATGTGTGTCAATCA-ATTT
* *
109932 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTTTCATAAATTTATGACGCACA
1 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
109997 AATGTGTGTC-ATCTTAATTT
66 AATGTGTGTCAATC--AATTT
* *
110017 ATGACGGGGGCTTTAATGACGCGTAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
1 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
* *
110082 AATCTGTGTCATATTAATTT
66 AATGTGTGTCA-ATCAATTT
* * * * *
110102 ATGACGGAGGCTTCAATGAAGCGCAATATAAGTCATACATGTGCGTCATAAAT
1 ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAAT
110155 GCGCATCATA
Statistics
Matches: 196, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
84 2 0.01
85 191 0.97
86 1 0.01
87 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (84 bp):
ATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTGTCATAAATTTATGACACACA
AATGTGTGTCAATCAATTT
Found at i:110151 original size:13 final size:13
Alignment explanation
Indices: 110133--110177 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
110123 CGCAATATAA
* *
110133 GTCATACATGTGC
1 GTCATAAATGCGC
110146 GTCATAAATGCGC
1 GTCATAAATGCGC
*
110159 ATCATAAATGCGC
1 GTCATAAATGCGC
110172 GTCATA
1 GTCATA
110178 GATTTATGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (13 bp):
GTCATAAATGCGC
Found at i:112037 original size:36 final size:35
Alignment explanation
Indices: 111953--112047 Score: 111
Period size: 36 Copynumber: 2.7 Consensus size: 35
111943 TACCTGTTCA
* * *
111953 ATCAATCTGAACCTATATAAGGAATTGCCAGTTTG
1 ATCAGTCTGAACCTACATAAGGAATTACCAGTTTG
* *
111988 ATCCAG-CTAAACCTGCAGTAAGGAATTACCAGTTTG
1 AT-CAGTCTGAACCTACA-TAAGGAATTACCAGTTTG
*
112024 ATCAGTCTGAACCTATATAAGGAA
1 ATCAGTCTGAACCTACATAAGGAA
112048 CCTGCAGAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
35 20 0.41
36 29 0.59
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (35 bp):
ATCAGTCTGAACCTACATAAGGAATTACCAGTTTG
Found at i:112199 original size:78 final size:78
Alignment explanation
Indices: 112114--112260 Score: 231
Period size: 78 Copynumber: 1.9 Consensus size: 78
112104 GACAATAACC
*
112114 AGTGGTAGCAGGAAATCAGAGTTCAAACATATCAATTCAGTAGAAACGATATCCAAAGATTATAA
1 AGTGGTAGCAGGAAATCAGAGTTCAAACATATCAATTCAGTAGAAACGATATCCAAAGATCATAA
112179 ATCAGATAGGAAG
66 ATCAGATAGGAAG
* ** * * *
112192 AGTGGTAGCAGGAAATTAGAGTTCAGGCATATCAATTCAGTAGAAACGGTATCCAGAGATCATGA
1 AGTGGTAGCAGGAAATCAGAGTTCAAACATATCAATTCAGTAGAAACGATATCCAAAGATCATAA
112257 ATCA
66 ATCA
112261 AACAGACAGA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 62 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.22
Consensus pattern (78 bp):
AGTGGTAGCAGGAAATCAGAGTTCAAACATATCAATTCAGTAGAAACGATATCCAAAGATCATAA
ATCAGATAGGAAG
Found at i:113469 original size:13 final size:13
Alignment explanation
Indices: 113453--113487 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
113443 TAAGATTTTC
113453 TTTTTGAAAATCA
1 TTTTTGAAAATCA
113466 TTTTTG-AAATCA
1 TTTTTGAAAATCA
*
113478 ATTTTGAAAA
1 TTTTTGAAAA
113488 ATTACTCCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.46
Consensus pattern (13 bp):
TTTTTGAAAATCA
Found at i:113552 original size:18 final size:18
Alignment explanation
Indices: 113509--113577 Score: 102
Period size: 19 Copynumber: 3.7 Consensus size: 18
113499 TTACTTTATT
*
113509 GTGTATCGGTAAATCCTAG
1 GTGTATCGGTACATCC-AG
113528 GTGTATCGGTACATCCAG
1 GTGTATCGGTACATCCAG
*
113546 GTATATCGGTACATCCCAG
1 GTGTATCGGTACAT-CCAG
113565 GTGTATCGGTACA
1 GTGTATCGGTACA
113578 CTAATTACAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
18 15 0.33
19 31 0.67
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (18 bp):
GTGTATCGGTACATCCAG
Found at i:114025 original size:12 final size:13
Alignment explanation
Indices: 113997--114030 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
113987 AAAATTTTCT
*
113997 TTTTGAAAATCAT
1 TTTTGAAAATCAA
114010 TTTTGAAAA-CAA
1 TTTTGAAAATCAA
114022 TTTTGAAAA
1 TTTTGAAAA
114031 ATTACTCCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (13 bp):
TTTTGAAAATCAA
Found at i:121998 original size:13 final size:13
Alignment explanation
Indices: 121980--122004 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121970 CATTTAAGAA
121980 CATATAAAACATT
1 CATATAAAACATT
121993 CATATAAAACAT
1 CATATAAAACAT
122005 AGGGAACACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
CATATAAAACATT
Found at i:123427 original size:13 final size:13
Alignment explanation
Indices: 123409--123434 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
123399 GACTTTTTGG
123409 TCAAAGTCAACGA
1 TCAAAGTCAACGA
123422 TCAAAGTCAACGA
1 TCAAAGTCAACGA
123435 GTATACTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (13 bp):
TCAAAGTCAACGA
Found at i:127170 original size:214 final size:214
Alignment explanation
Indices: 126771--127194 Score: 622
Period size: 214 Copynumber: 2.0 Consensus size: 214
126761 TAATCACGAG
* * * *
126771 CTCACATTAGTCCATAGACCTTTCTACTCAACCCTCATACATTGACTTAAAAAGGTATGGTGTTA
1 CTCACATTAGTCCATAGACCTTTCGACTCAACCCTCATACATTAACTCAAAAAGGTAGGGTGTTA
* *
126836 CAACTTTCGCTCCCAAAAGAAAATTTCGACTCAAAATTTACTTAAATCAGAAAAAAAATGCAGAT
66 CAACTTTCCCTCCCAAAAGAAAATTTCAACTCAAAATTTACTTAAATCAG--AAAAAATGCAGAT
** * *
126901 TCCATGGTCTACACCACAAAGACTCACAATCGCCTCTATGTAACATTAAGCCAACCCATTGAGAT
129 TCCATGGTCTACACCACAAAGACTCACAATCGCCTAAATGTAAAATTAAGCCAACCCATTGAGAG
126966 TGAAAT-TGAAATGTAAACGTA
194 TGAAATCT-AAATGTAAACGTA
* * *
126987 CTCACATTAGTCCATAGACCTTTCGGCTTAACCCAT-ATACATTAACTCAAAAAGTTAGGGTGTT
1 CTCACATTAGTCCATAGACCTTTCGACTCAACCC-TCATACATTAACTCAAAAAGGTAGGGTGTT
* *
127051 ACAACTTTTCCCTCCTAAAAGAAAATTTCAACTCAAAATTTACTTAAATCAG-AAGAATGC-GTA
65 ACAAC-TTTCCCTCCCAAAAGAAAATTTCAACTCAAAATTTACTTAAATCAGAAAAAATGCAG-A
*
127114 TTCCATGGTCTACACCACAAAGACTCACAATCGCCTAAATGTAAAATTGAGCCAACCCATTGAGA
128 TTCCATGGTCTACACCACAAAGACTCACAATCGCCTAAATGTAAAATTAAGCCAACCCATTGAGA
127179 GTGAAATCTAAATGTA
193 GTGAAATCTAAATGTA
127195 CTGAAAAGAA
Statistics
Matches: 188, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
213 1 0.01
214 82 0.44
215 1 0.01
216 60 0.32
217 44 0.23
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (214 bp):
CTCACATTAGTCCATAGACCTTTCGACTCAACCCTCATACATTAACTCAAAAAGGTAGGGTGTTA
CAACTTTCCCTCCCAAAAGAAAATTTCAACTCAAAATTTACTTAAATCAGAAAAAATGCAGATTC
CATGGTCTACACCACAAAGACTCACAATCGCCTAAATGTAAAATTAAGCCAACCCATTGAGAGTG
AAATCTAAATGTAAACGTA
Found at i:129999 original size:18 final size:20
Alignment explanation
Indices: 129966--130002 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
129956 TTGATAATGC
129966 ATTTAGCATGAAAGGTCAAA
1 ATTTAGCATGAAAGGTCAAA
129986 ATTT-GCAT-AAAGGTCAA
1 ATTTAGCATGAAAGGTCAA
130003 CTTTAACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.27
Consensus pattern (20 bp):
ATTTAGCATGAAAGGTCAAA
Found at i:141764 original size:21 final size:21
Alignment explanation
Indices: 141740--141793 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 21
141730 GCATGCTTTT
141740 TTCCTAGCATGTTTGCATTCA
1 TTCCTAGCATGTTTGCATTCA
*
141761 TTCCTAGCTCGCATGTTTTCATTCA
1 TTCCTA----GCATGTTTGCATTCA
141786 TTCCTAGC
1 TTCCTAGC
141794 TCGCTTGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
21 8 0.29
25 20 0.71
ACGTcount: A:0.17, C:0.28, G:0.13, T:0.43
Consensus pattern (21 bp):
TTCCTAGCATGTTTGCATTCA
Found at i:141776 original size:25 final size:25
Alignment explanation
Indices: 141746--141797 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
141736 TTTTTTCCTA
141746 GCATGTTTGCATTCATTCCTAGCTC
1 GCATGTTTGCATTCATTCCTAGCTC
*
141771 GCATGTTTTCATTCATTCCTAGCTC
1 GCATGTTTGCATTCATTCCTAGCTC
141796 GC
1 GC
141798 TTGTATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.40
Consensus pattern (25 bp):
GCATGTTTGCATTCATTCCTAGCTC
Found at i:159618 original size:365 final size:365
Alignment explanation
Indices: 158948--159666 Score: 1224
Period size: 365 Copynumber: 2.0 Consensus size: 365
158938 AAAAAATTGT
**
158948 AGGCTAAGGTATCAAAATGTGAATTTTGGTAACCAAAATTTTCTTTTCTTGGCCATGTAATTTCA
1 AGGCTAACCTATCAAAATGTGAATTTTGGTAACCAAAATTTTCTTTTCTTGGCCATGTAATTTCA
*
159013 GCAGAAGAAATCAGAGTAGATCCCAAGAAAATACAAGCAATAGTAGATCCTAAGAAATGAGAAGA
66 GCAGAAGAAATCAGAGTAGATCCCAAGAAAATACAAGCAATAGTAGATCCCAAGAAATGAGAAGA
*
159078 TCGTGATAACCAAGAGATTATAACAGGTACTTTCTATCTTTATGATGAGTATGTATTTGTTTTGA
131 TCGTAATAACCAAGAGATTATAACAGGTACTTTCTATCTTTATGATGAGTATGTATTTGTTTTGA
** * * *
159143 TTGATCTGAGTTCTACTCATTCCTATGTTAGCTCGAAATTAGTCAAAAATAGGGGTATTGAGGTA
196 TTGATCCAAGTTCTACGCATTCCTATGTTAGCTCGAAATTAGTCAAAAATAGAGGTATTCAGGTA
* * *
159208 GAACACATTGATAGTGATATGATAGGGGTATCCATTAGATCATAGTTCTAGAGTAAAGTGAATAA
261 GAAAACATTGATAGTGATATGATAGAGGTATCCATTAGATCATAGTGCTAGAGTAAAGTGAATAA
159273 GAATAAA-TTTTCCAATACAGTTTCAAGGGATCAGAGTTGA
326 GAATAAACTTTT-CAATACAGTTTCAAGGGATCAGAGTTGA
*
159313 AGGCTAACCTATCAAAATGTGAATTTTGGTAACCATAATTTTCTTTTCTTGGCCATGTAATTTCA
1 AGGCTAACCTATCAAAATGTGAATTTTGGTAACCAAAATTTTCTTTTCTTGGCCATGTAATTTCA
* * * * *
159378 GCAGAAGGAATCAGAGTTGATCCCAAGAAAATACAAGCAATAGTAGATCCCAATAATTGGGAAGA
66 GCAGAAGAAATCAGAGTAGATCCCAAGAAAATACAAGCAATAGTAGATCCCAAGAAATGAGAAGA
* *
159443 TCGTAATAACGAAGAGATTATAACATGTACTTTCTATCTTTATGATGAGTATGTATTTGTTTTGA
131 TCGTAATAACCAAGAGATTATAACAGGTACTTTCTATCTTTATGATGAGTATGTATTTGTTTTGA
*
159508 TTGATCCAAGTTCTACGCATTCCTATGTTAGCTCGAAATTAGTCAAAGATAGAGGTATTCAGGTA
196 TTGATCCAAGTTCTACGCATTCCTATGTTAGCTCGAAATTAGTCAAAAATAGAGGTATTCAGGTA
*
159573 GAAAACATTGATAGTGATATGATAGAGGTATCCATTAGGTCATAGTGCTAGAGTAAAGTGAATAA
261 GAAAACATTGATAGTGATATGATAGAGGTATCCATTAGATCATAGTGCTAGAGTAAAGTGAATAA
159638 GAATAAACTTTTCAATACAGTTTCAAGGG
326 GAATAAACTTTTCAATACAGTTTCAAGGG
159667 GTTGTATTCC
Statistics
Matches: 331, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
365 327 0.99
366 4 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (365 bp):
AGGCTAACCTATCAAAATGTGAATTTTGGTAACCAAAATTTTCTTTTCTTGGCCATGTAATTTCA
GCAGAAGAAATCAGAGTAGATCCCAAGAAAATACAAGCAATAGTAGATCCCAAGAAATGAGAAGA
TCGTAATAACCAAGAGATTATAACAGGTACTTTCTATCTTTATGATGAGTATGTATTTGTTTTGA
TTGATCCAAGTTCTACGCATTCCTATGTTAGCTCGAAATTAGTCAAAAATAGAGGTATTCAGGTA
GAAAACATTGATAGTGATATGATAGAGGTATCCATTAGATCATAGTGCTAGAGTAAAGTGAATAA
GAATAAACTTTTCAATACAGTTTCAAGGGATCAGAGTTGA
Done.