genome.fa.s6.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000006.1 Hibiscus syriacus cultivar Beakdansim tig00000012_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133993

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9411--9814	41	9.9	40	75	10	264	29	19	19	32	1.96
9843--9868	12	2.2	12	100	0	52	50	0	0	50	1.00
13798--13856	21	2.8	21	84	0	73	18	5	20	55	1.61
14046--14228	43	4.3	43	86	4	235	24	22	24	28	1.99
15850--16030	68	2.6	69	76	10	174	29	22	20	28	1.98
22314--22344	11	2.8	11	95	0	53	58	6	16	19	1.59
25855--25974	14	8.6	14	76	0	123	27	32	13	26	1.94
25854--25976	56	2.2	56	98	0	237	26	34	13	26	1.93
25855--25977	28	4.4	28	85	0	165	26	33	13	26	1.94
30589--30651	14	4.5	14	76	7	65	28	33	12	25	1.92
32574--32790	103	2.1	102	94	0	380	25	13	23	36	1.92
32797--32873	23	3.3	23	81	1	91	25	20	20	32	1.97
38281--38498	103	2.1	103	97	0	409	25	13	23	36	1.92
38515--38580	23	2.9	23	90	0	96	25	24	24	25	2.00
41091--41178	31	2.8	31	83	6	124	19	27	29	23	1.98
49126--49334	76	2.8	77	88	2	289	20	22	32	24	1.98
51916--51979	21	2.9	22	86	6	76	15	23	39	21	1.92
55791--55830	21	1.9	21	85	10	55	35	10	2	52	1.48
57755--57951	75	2.6	76	86	2	254	19	23	32	23	1.97
65393--65440	21	2.3	21	92	0	78	41	12	16	29	1.85
70051--70098	21	2.3	21	96	0	87	41	12	18	27	1.86
76582--76612	2	16.0	2	93	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76907--76974	7	9.7	7	82	6	57	19	0	29	51	1.47
76904--76974	14	5.1	14	79	6	72	19	0	30	49	1.49
76904--76974	21	3.4	21	78	0	79	19	0	30	49	1.49
76904--76974	28	2.5	28	83	0	88	19	0	30	49	1.49
77040--77085	14	3.3	14	78	0	56	21	2	21	54	1.56
77017--77078	21	3.0	21	81	6	63	25	1	22	50	1.59
80084--80241	21	7.8	20	72	7	86	38	25	17	18	1.92
80208--80401	20	9.6	20	81	5	221	35	25	19	19	1.95
80208--80401	60	3.2	60	83	0	253	35	25	19	19	1.95
80782--80852	33	2.2	33	89	0	106	11	23	16	47	1.79
80932--81041	21	5.8	20	74	17	108	45	18	24	11	1.83
80925--81041	41	3.1	38	81	14	145	46	17	25	11	1.81
80992--81048	14	3.7	14	75	20	60	43	22	24	8	1.81
80984--81064	33	2.5	33	95	0	144	46	22	22	8	1.78
81060--81157	19	5.7	19	70	22	81	10	24	22	42	1.84
81082--81171	14	5.7	14	74	23	81	8	25	23	42	1.83
81065--81179	33	3.5	33	95	0	212	9	24	20	45	1.81
82876--83440	185	3.0	185	98	0	1094	22	12	19	45	1.84
82876--83440	93	6.1	93	98	0	1080	22	12	19	45	1.84
83484--83549	19	3.4	20	83	6	82	45	25	16	12	1.82
83563--83690	19	7.2	19	75	17	132	10	19	24	45	1.82
83578--83634	14	3.7	14	77	20	60	10	21	22	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83563--83690	33	3.7	33	87	6	166	10	19	24	45	1.82
85613--85648	14	2.6	14	95	0	63	33	0	22	44	1.53
85755--85821	19	3.5	19	97	2	125	44	16	22	16	1.86
85828--85995	19	9.6	19	75	18	168	14	23	18	44	1.86
85834--85995	33	4.7	33	73	16	150	13	22	18	45	1.85
85828--85995	52	3.2	52	96	0	300	14	23	18	44	1.86
86054--86151	19	5.4	19	84	13	143	45	17	22	14	1.84
86054--86170	53	2.2	53	98	1	227	44	17	23	13	1.85
88487--88511	12	2.1	12	100	0	50	0	28	0	72	0.86
88686--88732	24	2.0	24	87	8	69	38	21	14	25	1.92
89414--89643	20	11.5	20	86	1	246	19	17	25	37	1.94
89630--89712	21	4.0	21	73	6	78	25	16	24	33	1.96
89610--89708	42	2.4	43	77	11	100	21	18	23	37	1.94
94632--94703	24	3.0	24	87	2	110	50	18	11	20	1.77
94636--94704	12	5.8	12	71	10	52	49	18	13	18	1.79
97172--97216	3	16.0	3	86	13	69	71	0	0	28	0.87
98894--99216	84	3.9	84	84	5	377	24	20	25	30	1.99
99408--100550	106	10.9	105	90	2	1641	23	18	24	33	1.97
104270--104308	5	7.4	5	97	2	60	76	0	0	23	0.78
105808--105843	13	2.8	13	95	0	63	19	13	50	16	1.79
105790--105831	18	2.3	18	87	0	57	19	16	47	16	1.83
105948--105981	13	2.6	13	100	0	68	47	23	11	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108696--108766	2	35.5	2	100	0	142	50	0	0	49	1.00
112318--112360	2	21.5	2	100	0	86	51	0	0	48	1.00
112377--112420	17	2.4	19	81	7	56	31	4	0	63	1.14
112481--112564	30	3.2	25	77	16	64	55	1	3	39	1.25
112536--112608	33	2.2	33	87	0	110	53	1	4	41	1.28
112637--112710	26	2.9	26	76	7	80	52	1	6	39	1.36
113968--114016	17	2.9	18	76	8	50	53	0	2	44	1.12
117381--117428	24	2.0	24	84	8	62	62	6	2	29	1.31
119693--119749	15	3.8	15	73	0	60	40	0	50	8	1.33
119691--119749	24	2.5	24	80	0	64	40	0	50	8	1.33
119718--119748	12	2.6	12	89	0	53	38	0	54	6	1.26
119697--119754	30	1.9	30	85	0	80	37	0	51	10	1.36
123994--124018	3	8.3	3	100	0	50	32	0	0	68	0.90
126244--126282	12	3.3	12	82	7	53	46	0	0	53	1.00
133143--133195	24	2.2	24	96	3	79	37	3	7	50	1.49

Tables:   1

The End!