genome.fa.s60.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000060.1 Hibiscus syriacus cultivar Beakdansim tig00000092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130568

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2199--2249	20	2.5	20	100	0	102	19	23	11	45	1.83
3769--3817	21	2.4	19	78	15	53	36	0	4	59	1.17
6386--6436	26	1.9	27	84	4	68	41	25	9	23	1.85
10935--10996	23	2.7	23	80	2	63	19	24	30	25	1.98
17077--17130	27	1.9	29	85	7	76	35	9	9	46	1.68
17944--17981	14	2.5	15	91	8	60	52	7	5	34	1.53
28165--28879	358	2.0	358	97	0	1358	35	16	23	24	1.95
36076--36115	18	2.2	18	86	0	53	32	0	2	65	1.06
36073--36119	22	2.1	22	84	11	60	34	0	2	63	1.06
36163--36197	2	17.5	2	100	0	70	48	0	0	51	1.00
36276--36348	29	2.5	31	73	8	71	26	1	5	67	1.21
36395--36451	12	4.2	13	75	18	53	24	3	0	71	1.01
36537--36584	20	2.5	19	80	12	53	22	10	0	66	1.22
37410--37454	20	2.2	20	88	7	65	28	31	40	0	1.57
40806--40876	16	4.7	15	78	13	74	78	5	14	1	0.99
40819--40890	19	3.6	19	79	7	63	80	5	11	2	0.98
40827--40886	16	3.9	14	83	16	59	80	6	11	1	0.98
41491--41545	22	2.5	22	100	0	110	36	27	12	23	1.91
41959--41994	18	2.0	18	88	0	54	19	8	27	44	1.79
42507--43781	106	12.0	106	91	0	1960	34	25	17	22	1.96
44533--44632	37	2.7	37	85	3	130	39	15	14	32	1.86
45033--45072	18	2.2	18	86	0	53	32	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45030--45076	22	2.1	22	84	11	60	34	0	2	63	1.06
45265--45336	26	2.7	26	73	18	67	27	4	1	66	1.18
47134--47160	14	1.9	14	100	0	54	33	0	22	44	1.53
49692--49779	29	2.9	31	79	5	108	31	19	20	28	1.97
49692--49779	30	2.9	31	83	5	108	31	19	20	28	1.97
49907--49944	16	2.4	17	82	13	53	42	18	7	31	1.79
55394--55437	16	2.7	17	82	10	56	38	18	6	36	1.77
57615--57701	42	2.1	42	84	4	113	21	5	29	42	1.76
57880--57955	33	2.4	31	88	6	107	28	0	14	56	1.39
57904--57960	16	3.5	16	73	21	64	26	0	14	59	1.35
60778--60843	24	2.8	24	86	4	89	24	15	19	40	1.90
62595--62641	22	2.2	22	88	3	69	34	19	10	36	1.86
66322--66392	38	1.9	37	88	5	108	19	14	7	59	1.58
66477--66529	27	2.0	27	88	0	79	35	3	1	58	1.27
67446--67487	21	2.0	22	86	9	61	23	14	28	33	1.94
68556--68601	24	2.0	23	86	4	65	26	19	23	30	1.98
72605--72680	3	25.0	3	97	2	143	65	1	32	0	1.01
73455--73850	20	19.2	20	77	9	332	38	25	19	16	1.92
73512--73850	42	8.2	42	87	7	412	37	26	19	16	1.93
73455--73842	62	6.3	61	80	10	344	38	26	19	16	1.92
73946--74061	6	19.5	6	99	0	225	32	50	16	0	1.45
74549--74609	6	10.5	6	98	1	108	0	16	52	31	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74717--74904	20	9.2	20	74	13	152	16	18	23	40	1.90
74717--74847	42	3.2	42	89	2	185	17	18	24	39	1.92
75094--75168	28	2.6	29	95	2	134	42	12	0	45	1.41
78444--78508	21	3.2	20	80	10	60	18	23	23	35	1.96
78467--78655	21	9.2	20	90	4	240	19	22	24	33	1.97
78467--78655	42	4.6	42	90	5	282	19	22	24	33	1.97
78501--78655	63	2.5	63	93	2	269	20	22	23	32	1.98
79237--79261	6	4.2	6	100	0	50	0	16	48	36	1.46
79354--79677	21	15.5	21	89	2	458	33	23	22	20	1.97
80141--80197	19	3.0	19	97	0	105	31	5	28	35	1.79
80510--80554	22	2.0	22	95	0	81	13	13	44	28	1.81
80684--80730	20	2.3	20	85	7	60	21	19	31	27	1.97
85227--85339	35	3.2	35	87	0	154	39	22	0	37	1.60
86401--86513	35	3.2	35	87	0	163	34	0	23	40	1.61
86856--86887	15	2.1	15	94	0	55	34	0	0	65	0.93
92411--92466	12	4.6	12	80	4	67	82	7	8	1	0.92
92411--92466	25	2.3	24	84	3	67	82	7	8	1	0.92
100254--100304	7	7.6	7	80	12	54	0	49	1	49	1.12
100327--100357	11	2.8	11	95	0	53	32	9	12	45	1.75
102966--103001	14	2.3	17	86	13	51	25	2	11	61	1.43
105346--105390	20	2.2	20	84	0	54	31	26	24	17	1.97
108814--108856	21	2.0	21	82	8	52	23	0	2	74	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112365--112446	27	3.1	27	60	16	64	28	4	18	48	1.68
114362--114415	6	9.2	6	76	15	51	83	0	14	1	0.73
114373--114415	19	2.2	19	95	4	77	83	0	16	0	0.64
115411--116104	136	5.1	136	84	4	855	36	17	20	26	1.94
119736--119787	20	2.5	20	75	3	50	63	3	3	28	1.30
119779--119809	15	2.1	15	93	0	53	70	0	0	29	0.87
120377--120420	20	2.3	18	88	7	61	34	2	0	63	1.07
122938--123099	67	2.5	64	88	3	234	32	21	16	29	1.95

Tables:   1

The End!