Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006000.1 Hibiscus syriacus cultivar Beakdansim tig00014146_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34830

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
557--600
13
3.2
14
78
15
56
38
2
0
59
1.10
11874--11932
1
59.0
1
82
0
73
91
0
6
1
0.48
11870--11932
13
4.8
13
86
13
85
90
0
7
1
0.52
11870--11933
15
4.3
15
86
11
87
89
0
9
1
0.56
11874--11933
23
2.6
24
89
7
97
90
0
8
1
0.53
11870--11933
30
2.1
30
94
0
110
89
0
9
1
0.56
13075--13550
83
5.7
83
95
0
835
25
13
23
37
1.91
13494--13703
114
1.8
114
88
0
321
32
16
21
30
1.95
14380--15266
113
7.8
113
95
0
1398
37
13
19
30
1.90
15517--15616
3
32.7
3
79
7
103
40
1
0
59
1.04
16005--16042
19
2.1
19
85
5
51
50
18
26
5
1.68
20780--20846
2
33.5
2
100
0
134
50
0
0
49
1.00
26344--26403
19
3.3
19
71
22
56
45
0
1
53
1.10
26392--26420
2
14.5
2
100
0
58
51
0
0
48
1.00
26624--26652
14
2.0
15
93
6
51
65
0
0
34
0.93
27861--27931
2
38.0
2
83
13
98
52
0
1
46
1.09
28281--28340
28
2.2
27
83
16
72
58
3
0
38
1.15
28402--28427
13
2.0
13
100
0
52
23
7
38
30
1.83
29632--29671
16
2.5
15
84
11
53
25
12
12
50
1.75
29826--29864
18
2.2
18
86
9
53
51
5
0
43
1.24
29959--29988
16
1.9
15
93
6
51
60
0
0
40
0.97
29960--30006
24
1.9
24
83
12
60
57
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30195--30269
39
1.9
39
91
0
123
40
22
5
32
1.77
30490--30521
2
16.0
2
100
0
64
50
0
0
50
1.00
30528--30604
32
2.4
33
86
2
102
41
15
7
35
1.76
30528--30624
32
3.0
32
82
10
101
42
16
6
35
1.73
30923--30954
15
2.1
15
94
0
55
46
0
15
37
1.46

Tables:   1

The End!