Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006001.1 Hibiscus syriacus cultivar Beakdansim tig00014147_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57489

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1693--1741
21
2.3
21
78
0
53
28
28
20
22
1.98
2892--2933
3
14.0
3
82
9
50
40
0
0
59
0.97
2892--2934
17
2.6
17
96
3
79
41
0
0
58
0.98
2886--2930
14
3.2
14
81
6
56
42
0
0
57
0.98
8557--8713
20
7.8
20
71
14
81
33
26
15
24
1.95
8640--8729
20
4.5
20
90
0
117
34
24
17
23
1.96
8657--8748
40
2.3
38
78
10
103
38
23
17
20
1.93
8903--8950
22
2.2
22
92
0
78
18
43
16
20
1.88
9368--9406
19
2.1
19
95
0
69
17
20
12
48
1.80
11139--11235
21
4.6
23
71
12
66
20
11
35
32
1.88
11114--11235
63
1.9
63
83
6
158
22
11
34
31
1.90
11514--11563
21
2.4
21
86
0
64
20
36
22
22
1.96
12908--12940
13
2.4
14
95
5
59
30
0
21
48
1.50
12982--13021
14
2.9
14
96
0
71
35
0
22
42
1.54
12919--13064
65
2.3
64
89
2
213
30
0
18
50
1.52
13127--13188
20
3.1
20
76
0
70
33
17
20
27
1.96
13436--13472
18
2.1
18
94
0
65
16
2
24
56
1.53
15730--15783
24
2.2
24
93
0
90
40
20
18
20
1.91
15730--15797
24
2.8
24
84
0
64
38
20
17
23
1.93
16688--16836
20
7.5
20
76
10
87
38
10
20
30
1.87
16708--16792
40
2.1
40
86
0
116
36
11
21
30
1.89
16708--16867
60
2.6
62
77
6
159
35
10
21
31
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16708--16836
40
3.2
39
76
10
100
37
10
20
31
1.86
16829--16884
20
2.8
20
94
0
94
28
10
28
32
1.90
17198--17263
31
2.1
31
85
0
87
28
6
12
53
1.62
20082--20467
183
2.1
184
90
3
611
45
8
3
43
1.50
21864--21914
2
26.0
2
96
4
95
49
0
0
50
1.00
29040--29068
12
2.5
12
94
5
51
62
0
0
37
0.96
36619--36657
9
4.4
9
93
6
71
20
0
10
69
1.17
36620--36657
17
2.2
17
100
0
76
21
0
10
68
1.19
36620--36665
17
2.8
17
93
3
67
21
2
8
67
1.29
36865--36921
11
5.2
11
82
0
60
59
1
26
12
1.43
39388--39434
21
2.2
21
85
7
60
68
2
2
27
1.13
39708--39775
2
34.0
2
100
0
136
50
0
0
50
1.00
39898--39955
25
2.3
25
81
0
71
43
3
13
39
1.61
44963--45052
23
4.0
23
77
12
80
36
25
14
23
1.93

Tables:   1

The End!