Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006002.1 Hibiscus syriacus cultivar Beakdansim tig00014151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61147

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11851--11938
31
3.0
30
75
14
94
32
21
6
38
1.80
18727--18765
20
2.0
20
89
0
60
23
12
25
38
1.90
19228--19305
21
3.7
21
63
13
52
25
16
20
37
1.93
19206--19314
42
2.6
41
78
5
130
27
19
17
35
1.94
19396--19440
16
2.8
16
80
16
56
77
0
11
11
0.99
18754--19406
261
2.5
261
82
5
827
32
15
17
34
1.91
22144--22245
23
4.4
23
81
0
114
19
23
22
34
1.97
22144--22240
46
2.1
46
92
0
158
20
24
20
34
1.97
25192--25239
16
3.1
17
75
25
52
60
2
0
37
1.09
29980--30027
23
2.1
23
88
0
69
35
12
18
33
1.89
30755--30791
18
2.1
18
89
0
56
51
10
5
32
1.60
30995--31059
23
2.8
23
85
0
85
38
16
7
36
1.78
31417--31468
23
2.3
22
90
6
77
44
19
1
34
1.62
31427--31489
23
2.7
23
90
0
90
38
19
6
36
1.77
31845--31896
23
2.3
22
90
6
77
44
19
1
34
1.62
31855--31917
23
2.7
23
90
0
90
38
19
6
36
1.77
30997--32237
428
2.9
431
98
0
2427
38
13
7
40
1.73
32287--32373
3
29.0
3
77
0
84
24
34
5
35
1.79
32287--32388
18
5.7
18
79
0
87
22
34
6
36
1.81
32295--32385
42
2.2
42
91
0
146
21
35
7
35
1.83
33845--35462
199
8.1
199
98
0
3046
31
14
15
37
1.89
35544--35588
19
2.4
19
92
0
72
57
8
2
31
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37381--37441
32
1.9
32
86
0
86
24
44
1
29
1.63
39743--39789
20
2.4
19
79
10
58
19
17
8
55
1.67
39909--39954
20
2.3
20
89
10
76
17
17
10
54
1.70
41640--41790
74
2.0
74
94
0
266
37
10
5
46
1.61
42211--42280
25
2.9
24
78
8
79
54
1
1
42
1.18
42254--42314
21
3.0
20
78
4
77
54
1
1
42
1.20
42259--42323
21
3.2
20
75
12
69
52
1
1
44
1.19
46150--46216
23
2.9
23
97
0
125
29
26
23
19
1.98
58942--58996
19
2.9
19
88
0
74
29
23
12
34
1.92

Tables:   1

The End!