genome.fa.s6006.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006006.1 Hibiscus syriacus cultivar Beakdansim tig00014159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110440

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7498--7542	17	2.8	17	84	15	53	42	4	17	35	1.70
8671--8747	12	6.4	12	77	3	75	24	9	16	49	1.75
8668--8747	24	3.3	24	92	0	133	25	10	16	48	1.76
9645--9760	35	3.3	35	86	6	162	35	2	36	25	1.70
9734--9759	13	2.0	13	100	0	52	38	0	38	23	1.55
10104--10146	19	2.2	20	87	4	61	48	6	9	34	1.62
13566--13611	16	2.9	16	84	9	67	0	15	4	80	0.86
13999--14056	13	4.7	13	73	16	52	31	1	41	25	1.66
13977--14057	36	2.3	36	95	2	146	30	3	39	25	1.73
14401--14443	19	2.2	20	87	4	61	48	4	11	34	1.60
17094--17158	35	1.9	35	90	6	107	21	13	46	18	1.84
17183--17241	29	2.0	29	87	6	84	11	22	32	33	1.90
18394--18426	13	2.5	13	95	0	57	39	6	9	45	1.61
18403--18472	14	5.3	14	73	11	58	42	11	4	41	1.60
18454--18497	22	2.0	22	90	0	70	47	9	4	38	1.56
18615--18650	2	18.0	2	100	0	72	50	0	0	50	1.00
23832--23911	31	2.7	30	79	12	94	48	6	7	37	1.57
27537--27695	79	2.0	79	98	0	309	44	28	6	20	1.77
32240--32288	24	2.0	24	100	0	98	42	12	12	32	1.79
32462--32490	12	2.3	13	94	5	51	51	17	0	31	1.45
35759--35795	3	12.7	3	94	5	67	67	0	0	32	0.91
35763--35791	14	2.1	14	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35760--35794	17	2.1	17	100	0	70	65	0	0	34	0.93
35836--35926	26	3.5	26	95	1	157	35	9	6	48	1.63
37328--37460	26	5.0	26	72	13	108	36	15	11	37	1.83
37304--37477	81	2.1	82	94	3	316	36	14	9	39	1.79
38209--38239	2	15.5	2	100	0	62	51	0	0	48	1.00
38337--38390	9	5.8	10	78	20	55	57	1	1	38	1.20
38354--38402	16	3.1	16	82	11	57	55	4	2	38	1.31
38406--38436	2	15.5	2	100	0	62	51	0	0	48	1.00
40741--40826	23	3.7	23	87	0	118	25	18	25	30	1.98
44051--44092	19	2.2	19	100	0	84	33	11	14	40	1.82
44756--44792	14	2.6	15	83	12	51	13	29	10	45	1.77
46776--46920	39	3.7	39	87	2	186	28	16	16	38	1.90
46775--47065	76	3.8	78	79	5	222	30	14	15	39	1.87
46889--47017	40	3.3	40	72	9	106	33	12	15	38	1.85
46917--47048	40	3.4	39	71	9	117	34	11	12	42	1.78
46895--47114	76	2.9	75	82	8	266	31	13	14	40	1.84
47122--47450	36	9.1	36	84	2	374	25	21	13	39	1.90
47388--47490	36	2.9	36	88	2	136	31	19	10	38	1.86
47749--48112	118	3.1	117	86	3	500	36	15	22	25	1.94
48142--48878	132	5.7	132	82	4	837	31	19	18	30	1.96
48147--48572	88	4.8	88	72	1	269	30	19	19	30	1.96
48197--48750	44	12.6	44	69	7	239	31	19	19	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50162--50213	25	2.0	25	82	17	63	17	1	3	76	1.02
53845--53904	23	2.6	23	86	0	84	21	26	23	28	1.99
58729--58789	23	2.7	23	89	0	104	18	27	26	27	1.98
69507--69544	19	2.0	19	94	0	67	21	18	15	44	1.86
69889--71939	4	513.8	4	99	0	4029	49	25	0	24	1.52
74113--74153	20	2.0	21	95	4	75	19	4	12	63	1.46
74335--74379	3	15.0	3	100	0	90	33	0	0	66	0.92
82956--83008	2	27.0	2	81	11	65	43	1	1	52	1.23
83053--83090	18	2.1	19	85	5	51	21	5	2	71	1.19
94539--94615	9	9.4	9	75	22	73	77	0	10	11	0.98
94551--94640	15	6.3	15	74	20	86	77	0	12	10	0.98
94568--94640	28	2.8	26	78	17	71	76	0	12	10	1.02
94521--94640	42	2.8	40	81	13	134	76	0	13	9	1.06
94539--94632	9	12.1	8	72	19	67	77	0	10	11	0.99
95513--95817	134	2.3	136	91	2	515	33	17	23	25	1.96
98408--98462	2	28.0	2	82	10	69	43	1	1	52	1.22
98507--98544	18	2.1	19	85	5	51	21	5	2	71	1.19
101851--102106	46	5.6	46	88	1	381	24	21	12	41	1.88
101871--102098	45	5.1	41	74	14	145	24	21	13	40	1.89
101851--102106	91	2.8	91	90	2	408	24	21	12	41	1.88
103670--103798	68	1.9	68	88	0	195	38	24	8	28	1.84
104062--104132	32	2.4	29	84	13	99	45	16	14	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104075--104139	32	2.0	32	96	0	121	46	15	13	24	1.82
104276--104353	41	1.9	41	86	5	113	34	15	24	25	1.95
104276--104384	41	2.7	41	81	8	107	37	16	21	24	1.93
104359--104497	71	2.0	71	92	0	233	38	16	21	23	1.93
104556--104770	41	5.3	40	83	4	254	35	16	18	29	1.93
104556--104778	121	1.8	121	84	6	308	35	16	18	29	1.92
105740--105792	18	2.9	18	85	0	79	22	43	13	20	1.86

Tables:   1

The End!