genome.fa.s6009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006009.1 Hibiscus syriacus cultivar Beakdansim tig00014175_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85162

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425--461	14	2.6	14	91	8	58	24	24	18	32	1.97
3369--3424	27	2.1	27	93	0	94	44	21	12	21	1.85
4074--4110	18	2.0	19	94	5	67	35	21	0	43	1.53
6210--6549	54	6.3	55	83	8	441	32	13	17	35	1.89
6210--6585	107	3.5	107	87	4	492	32	13	17	35	1.90
10011--10315	60	5.1	60	83	2	353	30	22	11	35	1.90
10724--10784	22	2.8	22	92	2	97	27	16	16	39	1.90
10826--10873	20	2.5	19	86	6	62	31	29	12	27	1.93
15305--15759	54	8.4	55	86	3	611	31	13	18	36	1.89
15324--15751	108	3.9	108	92	1	678	32	13	17	36	1.88
17643--17677	15	2.3	15	100	0	70	28	40	0	31	1.57
18119--18188	36	1.9	36	85	0	95	28	35	14	21	1.92
18293--18336	21	2.1	21	86	0	61	40	34	2	22	1.67
18840--18950	49	2.3	48	86	10	156	61	15	6	17	1.53
18840--18969	49	2.7	48	82	12	153	58	17	6	16	1.60
19064--19123	16	3.8	16	78	12	70	55	8	5	31	1.51
24416--24475	3	20.0	3	79	6	68	35	0	1	63	1.05
26273--26312	11	3.3	13	80	13	50	50	2	0	47	1.14
28402--28430	13	2.3	13	94	5	51	24	13	6	55	1.63
30396--30472	25	3.2	25	89	7	106	84	0	15	0	0.62
30396--30471	14	5.7	13	81	7	82	84	0	15	0	0.63
30398--30464	7	9.9	7	85	8	86	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35619--36200	112	5.1	112	80	9	606	38	14	17	29	1.90
35624--36185	226	2.4	223	83	6	644	38	14	17	29	1.89
36543--36605	3	21.0	3	83	6	83	33	0	1	65	1.03
37996--38026	16	1.9	16	93	0	53	38	3	3	54	1.32
38040--38124	34	2.3	36	75	20	95	42	3	2	51	1.31
38403--38442	11	3.3	13	80	13	50	50	2	0	47	1.14
44396--44431	18	2.0	18	94	0	63	38	0	8	52	1.32
44849--44940	31	3.0	31	86	0	130	54	7	9	28	1.60
53102--53145	21	2.1	21	87	8	63	47	0	0	52	1.00
65651--65701	19	2.5	21	87	6	70	25	23	7	43	1.81
68267--68304	18	2.1	18	90	0	58	31	15	42	10	1.81
71004--71141	70	2.0	69	85	5	190	44	6	7	42	1.58
71034--71129	34	2.7	36	79	9	108	45	5	7	41	1.54
71031--71144	34	3.3	33	70	14	88	43	5	7	42	1.56
71004--71146	68	2.1	67	84	7	182	44	6	6	41	1.56
71141--71287	35	4.1	34	71	14	93	44	3	6	45	1.47
71152--71287	71	1.9	72	81	4	168	44	3	7	44	1.49
72600--72650	21	2.5	20	76	17	59	35	17	21	25	1.95
72677--72725	20	2.4	21	82	3	64	32	28	16	22	1.95
72740--72860	41	3.1	41	82	11	155	34	19	13	32	1.91
75866--75985	59	2.0	60	80	7	138	49	10	5	35	1.60
75923--76115	58	3.4	57	78	7	160	42	13	7	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75791--76117	57	5.7	56	72	14	202	42	12	7	37	1.71
76007--76177	58	2.9	57	79	9	159	42	13	9	33	1.77
79997--80049	3	17.7	3	88	7	81	32	1	0	66	1.03
84707--84829	64	1.9	65	88	6	189	30	18	21	29	1.97

Tables:   1

The End!