Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000601.1 Hibiscus syriacus cultivar Beakdansim tig00001168_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64258

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5359--5398
19
2.1
19
95
0
71
35
7
15
42
1.75
7659--7772
42
2.7
41
80
8
113
28
21
19
29
1.98
8097--8650
134
4.1
134
85
1
743
30
21
16
31
1.95
10556--10631
24
3.2
24
88
0
107
36
22
19
21
1.95
10636--10700
22
2.9
23
79
2
78
32
26
26
15
1.95
10803--10872
30
2.3
30
82
0
95
45
18
5
30
1.72
10803--10872
15
4.7
15
76
0
77
45
18
5
30
1.72
18242--18283
22
1.9
22
90
0
66
33
4
30
30
1.78
18181--18522
185
1.8
185
83
3
447
32
8
18
40
1.81
18454--18580
55
2.2
57
88
5
186
37
8
16
37
1.80
18514--18822
168
1.8
166
81
10
378
35
8
15
40
1.78
18681--19045
187
1.9
190
84
3
495
33
8
14
42
1.76
20497--20564
23
3.0
23
81
12
88
35
25
13
26
1.92
22598--23056
190
2.4
191
79
9
474
33
9
15
41
1.79
27814--27896
43
1.9
43
95
0
148
25
25
13
36
1.92
28442--28472
10
3.1
10
95
0
53
41
16
0
41
1.48
31565--31615
9
5.7
9
73
17
52
9
17
17
54
1.69
31562--31615
18
3.0
18
100
0
108
11
16
16
55
1.68
32394--32677
142
2.0
142
99
0
559
30
19
23
27
1.98
37962--38026
29
2.2
29
86
0
94
33
18
3
44
1.65
37992--38148
60
2.6
60
82
6
176
34
22
3
39
1.70
38674--38723
19
2.8
18
74
11
50
44
0
2
54
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40850--40879
11
2.7
11
100
0
60
73
6
10
10
1.25
52118--52153
18
2.0
18
88
0
54
27
22
16
33
1.95
54677--54736
23
2.6
23
86
0
75
20
25
26
28
1.99
60748--60815
21
3.4
21
88
12
115
32
25
16
26
1.96
61002--61046
19
2.3
20
96
3
83
26
17
24
31
1.97
61586--61645
23
2.6
23
83
0
84
21
23
25
30
1.99

Tables:   1

The End!