Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006010.1 Hibiscus syriacus cultivar Beakdansim tig00014177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86387
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:2780 original size:81 final size:81
Alignment explanation
Indices: 2626--2935 Score: 354
Period size: 81 Copynumber: 3.8 Consensus size: 81
2616 ACTATTCCAA
* * * *
2626 GAGTAAAAGATTAAATGGCCTAGATCTGCATTTGGAAGAATGGTGTCAATTATGCTAGTTAGATG
1 GAGTAAAAGAAT-AATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATG
* *
2691 AACAGTTAAATACCGGT
65 AACTGTTAAATACCGTT
* * * * * *
2708 GAGAAAAAGAATAATGGCCTAGCTGTGCATTTGGCAGAAAGATGTTAATTATGCCAGTTAGATTA
1 GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATGA
2773 ACTGTTAAATACCGTT
66 ACTGTTAAATACCGTT
* * * * *
2789 GATTAAAAGATTAATGGCCTAGCTCTGCATTTGGAAGAAAGGTGTCAATTACGCCAGTTAGATGA
1 GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATGA
2854 A-TGGTTAAATACCGTT
66 ACT-GTTAAATACCGTT
* * * * * * * *
2870 AAGTAAAAGAATAATGTCCTAGATGTGCATTT-GACAAAAAAATGTCAATTATACAACTTAGATG
1 GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGA-AGAAAGATGTCAATTATGCCAGTTAGATG
2934 AA
65 AA
2936 AGGCTAAATG
Statistics
Matches: 192, Mismatches: 34, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
80 3 0.02
81 179 0.93
82 10 0.05
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (81 bp):
GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATGA
ACTGTTAAATACCGTT
Found at i:3047 original size:45 final size:44
Alignment explanation
Indices: 3001--3112 Score: 116
Period size: 44 Copynumber: 2.5 Consensus size: 44
2991 ATGGTACATA
* *
3001 AAAGGCATGAAAGGATGCCATAAATGAAATGTATAACAGTGTAT
1 AAAGGCATGAAAGGATGCCATAAATGAAATGCATAACAGTGCAT
* * * * **
3045 AAATGCATTAAAGGATGTCATAATTGAAATGCATATGAGTGCATT
1 AAAGGCATGAAAGGATGCCATAAATGAAATGCATAACAGTGCA-T
** *
3090 ATCGGCATGAAAGAATGCCATAA
1 AAAGGCATGAAAGGATGCCATAA
3113 TTAAATACAT
Statistics
Matches: 53, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
44 35 0.66
45 18 0.34
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (44 bp):
AAAGGCATGAAAGGATGCCATAAATGAAATGCATAACAGTGCAT
Found at i:3131 original size:42 final size:43
Alignment explanation
Indices: 3049--3439 Score: 366
Period size: 45 Copynumber: 9.0 Consensus size: 43
3039 GTGTATAAAT
* * * *
3049 GCATTAAAGGATGTCATAATTGAAATGCATATGAGTGCATTATCG
1 GCATGAAAGGATGCCATAATTGAAAT--ACATGGGTGCATTATCG
* *
3094 GCATGAAAGAATGCCATAATT-AAATACATGGGTGCATTATCA
1 GCATGAAAGGATGCCATAATTGAAATACATGGGTGCATTATCG
3136 GCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATCG
1 GCATGAAAGGATGCCATAATTGAAATAC--ATGGGTGCATTATCG
* * * * * *
3181 ACCTAAAAGGATGGCATAATTAAAATACATATGGGTGGATTATCG
1 GCATGAAAGGATGCCATAATTGAAATAC--ATGGGTGCATTATCG
*
3226 GCATGAAA--ATG-CATAATTGAAATGCATATGGGTGCATTATCG
1 GCATGAAAGGATGCCATAATTGAAAT--ACATGGGTGCATTATCG
* *
3268 GCATGAAAGGATGCCATAATT-AAATGAATATGGGTGCATTATCA
1 GCATGAAAGGATGCCATAATTGAAAT--ACATGGGTGCATTATCG
* *
3312 GCATGAAAGGATGCC-TAATTGAAATGCATATGGTGCATTATCG
1 GCATGAAAGGATGCCATAATTGAAATACAT-GGGTGCATTATCG
* * * * **
3355 ACATGAAAAGATGTCACAATTGAAATGTATGGGTGCATTATCG
1 GCATGAAAGGATGCCATAATTGAAATACATGGGTGCATTATCG
* * **
3398 AC-TGAAAGGATGACATAAATAAAAATACAAT-GGTGCATTATC
1 GCATGAAAGGATGCCAT-AATTGAAATAC-ATGGGTGCATTATC
3440 ATGAATGGAT
Statistics
Matches: 294, Mismatches: 39, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
42 80 0.27
43 69 0.23
44 62 0.21
45 83 0.28
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.27
Consensus pattern (43 bp):
GCATGAAAGGATGCCATAATTGAAATACATGGGTGCATTATCG
Found at i:3160 original size:87 final size:88
Alignment explanation
Indices: 3049--3415 Score: 430
Period size: 87 Copynumber: 4.2 Consensus size: 88
3039 GTGTATAAAT
* * * *
3049 GCATTAAAGGATGTCATAATTGAAATGCATATGAGTGCATTATCGGCATGAAAGAATGCCATAAT
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGACATGAAAGAATGCCATAAT
3114 T-AAATACATGGGTGCATTATCA
66 TAAAATACATGGGTGCATTATCA
* * * * *
3136 GCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATCGACCTAAAAGGATGGCATAAT
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGACATGAAAGAATGCCATAAT
* *
3201 TAAAATACATATGGGTGGATTATCG
66 TAAAATAC--ATGGGTGCATTATCA
* *
3226 GCATGAAA--ATG-CATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAAT
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGACATGAAAGAATGCCATAAT
*
3288 T-AAATGAATATGGGTGCATTATCA
66 TAAAAT--ACATGGGTGCATTATCA
* *
3312 GCATGAAAGGATGCC-TAATTGAAATGCATAT-GGTGCATTATCGACATGAAA-AGATGTCACAA
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGACATGAAAGA-ATGCCATAA
* **
3374 TTGAAATGTATGGGTGCATTATC-
65 TTAAAATACATGGGTGCATTATCA
*
3397 G-ACTGAAAGGATGACATAA
1 GCA-TGAAAGGATGCCATAA
3416 ATAAAAATAC
Statistics
Matches: 243, Mismatches: 25, Indels: 25
0.83 0.09 0.09
Matches are distributed among these distances:
84 1 0.00
85 12 0.05
86 43 0.18
87 132 0.54
88 33 0.14
89 1 0.00
90 21 0.09
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (88 bp):
GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGACATGAAAGAATGCCATAAT
TAAAATACATGGGTGCATTATCA
Found at i:3227 original size:132 final size:129
Alignment explanation
Indices: 3049--3440 Score: 460
Period size: 132 Copynumber: 3.0 Consensus size: 129
3039 GTGTATAAAT
* * *
3049 GCATTAAAGGATGTCATAATTGAAATGCATATGAGTGCATTATCGGCATGAAAGAATGCCATAAT
1 GCATAAAAGGATGGCATAATTGAAATGCATATGGGTGCATTATCGGCATGAAA-AATG-CATAAT
*
3114 T-AAATACATGGGTGCATTATCAGCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTA
64 TGAAATATATGGGTGCATTATC-GCATGAAAGGATGCCATAATT-AAATACATATGGGTGCATTA
3178 TC-
127 TCA
* * * *
3180 GACCTAAAAGGATGGCATAATTAAAATACATATGGGTGGATTATCGGCATG-AAAATGCATAATT
1 G-CATAAAAGGATGGCATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAAATGCATAATT
3244 GAAATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTAAATGA-ATATGGGTGCATT
65 GAAAT--ATATGGGTGCATTATC-GCATGAAAGGATGCCATAATTAAAT-ACATATGGGTGCATT
3308 ATCA
126 ATCA
* * * *
3312 GCATGAAAGGAT-GCCTAATTGAAATGCATAT-GGTGCATTATCGACATGAAAAGATGTCACAAT
1 GCATAAAAGGATGGCATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAA-ATG-CATAAT
* * *
3375 TGAAATGTATGGGTGCATTATCG-ACTGAAAGGATGACATAAATAAAAATACA-AT-GGTGCATT
64 TGAAATATATGGGTGCATTATCGCA-TGAAAGGATGCCAT-AAT-TAAATACATATGGGTGCATT
3437 ATCA
126 ATCA
3441 TGAATGGATG
Statistics
Matches: 228, Mismatches: 20, Indels: 28
0.83 0.07 0.10
Matches are distributed among these distances:
128 1 0.00
129 48 0.21
130 48 0.21
131 40 0.18
132 91 0.40
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.27
Consensus pattern (129 bp):
GCATAAAAGGATGGCATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAAATGCATAATTG
AAATATATGGGTGCATTATCGCATGAAAGGATGCCATAATTAAATACATATGGGTGCATTATCA
Found at i:3465 original size:41 final size:43
Alignment explanation
Indices: 3083--3439 Score: 138
Period size: 42 Copynumber: 8.2 Consensus size: 43
3073 ATGCATATGA
* * * *
3083 GTGCATTATCGGCATGAAAGAATGCCAT-AAT-TAAATAC-ATGG
1 GTGCATTATCGAC-TGAAAGGATGACATAAATAAAAATACAAT-G
* **
3125 GTGCATTATC-AGCATGAAAGGATGCCAT-AATTGAAATACATATGG
1 GTGCATTATCGA-C-TGAAAGGATGACATAAATAAAAATACA-AT-G
* * *
3170 GTGCATTATCGACCTAAAAGGATGGCAT-AATTAAAATACATATGG
1 GTGCATTATCGA-CTGAAAGGATGACATAAATAAAAATACA-AT-G
* * ** *
3215 GTGGATTATCGGCATGAAA--ATG-CAT-AATTGAAATGCATATGG
1 GTGCATTATCGAC-TGAAAGGATGACATAAATAAAAATACA-AT-G
* * *
3257 GTGCATTATCGGCATGAAAGGATGCCAT-AAT-TAAATGA-ATATGG
1 GTGCATTATCGAC-TGAAAGGATGACATAAATAAAAAT-ACA-AT-G
* ** *
3301 GTGCATTATC-AGCATGAAAGGATG-CCT-AATTGAAATGCATATG
1 GTGCATTATCGA-C-TGAAAGGATGACATAAATAAAAATACA-ATG
* * * ** **
3344 GTGCATTATCGACATGAAAAGATGTCA-CAATTGAAAT-GTATGG
1 GTGCATTATCGAC-TGAAAGGATGACATAAATAAAAATACAAT-G
3387 GTGCATTATCGACTGAAAGGATGACATAAATAAAAATACAATG
1 GTGCATTATCGACTGAAAGGATGACATAAATAAAAATACAATG
3430 GTGCATTATC
1 GTGCATTATC
3440 ATGAATGGAT
Statistics
Matches: 266, Mismatches: 30, Indels: 37
0.80 0.09 0.11
Matches are distributed among these distances:
42 77 0.29
43 68 0.26
44 57 0.21
45 62 0.23
46 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (43 bp):
GTGCATTATCGACTGAAAGGATGACATAAATAAAAATACAATG
Found at i:7641 original size:81 final size:80
Alignment explanation
Indices: 7478--7858 Score: 434
Period size: 81 Copynumber: 4.8 Consensus size: 80
7468 CTCGAAAATA
** * * * *
7478 AAAAGATTAAATAACCTAGCTGTGTATTTGGCAGAAATTTGTCAATTATGCCAATTAGATGAACG
1 AAAAGATT-AATGGCCTAGTTGTGCATTTGGCA-AAATGTGTCAATTATGCCAGTTAGATGAACG
*
7543 GTTAAATACCGTCGAGT
64 GTTAAATACCGTTGAGT
*
7560 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAATGTGTCAATTATGCCAGTTAGATGAACGAT
1 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAATGTGTCAATTATGCCAGTTAGATGAACG-G
7625 TTAAATACCGTTGAGT
65 TTAAATACCGTTGAGT
* * * * * *
7641 AAAAGATTAATGGCCTAGCTGTGTATTTGGAAAAAAAGTGTTAATTATGTCAGTTAGATGAACGG
1 AAAAGATTAATGGCCTAGTTGTGCATTTGG-CAAAATGTGTCAATTATGCCAGTTAGATGAACGG
7706 TTTAAATA-CG--GAGT
65 -TTAAATACCGTTGAGT
* * * *
7720 AAAAGATTAATGGCCTA-TATGTGCATTTGGAAAAAAGGTGTCAATTATTCCTGTTAGATG-ACG
1 AAAAGATTAATGGCCTAGT-TGTGCATTTGG-CAAAATGTGTCAATTATGCCAGTTAGATGAACG
*
7783 GTTAAATACAGTTGAGT
64 GTTAAATACCGTTGAGT
* * * * *
7800 AAAAGATTAATGTCCTAGTTGTTCATTTGACAAAA--AGTCAATTATGCAAGTTAGATGAA
1 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAATGTGTCAATTATGCCAGTTAGATGAA
7859 AGGCTAAAGG
Statistics
Matches: 259, Mismatches: 31, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
77 25 0.10
78 6 0.02
79 60 0.23
80 58 0.22
81 66 0.25
82 44 0.17
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (80 bp):
AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAATGTGTCAATTATGCCAGTTAGATGAACGGT
TAAATACCGTTGAGT
Found at i:7752 original size:79 final size:80
Alignment explanation
Indices: 7517--7858 Score: 430
Period size: 79 Copynumber: 4.3 Consensus size: 80
7507 GGCAGAAATT
*
7517 TGTCAATTATGCCAATTAGATGAACGGTTAAATACCGTCGAGTAAAAGATTAATGGCCTAGTTGT
1 TGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT-GAGTAAAAGATTAATGGCCTAGTTGT
* *
7582 GCATTTGG-CAAAATG
65 GCATTTGGAAAAAAAG
* *
7597 TGTCAATTATGCCAGTTAGATGAACGATTTAAATACCGTTGAGTAAAAGATTAATGGCCTAGCTG
1 TGTCAATTATGCCAGTTAGATGAACG-GTTAAATACCG-TGAGTAAAAGATTAATGGCCTAGTTG
*
7662 TGTATTTGGAAAAAAAG
64 TGCATTTGGAAAAAAAG
* *
7679 TGTTAATTATGTCAGTTAGATGAACGGTTTAAATA-CG-GAGTAAAAGATTAATGGCCTA-TATG
1 TGTCAATTATGCCAGTTAGATGAACGG-TTAAATACCGTGAGTAAAAGATTAATGGCCTAGT-TG
*
7741 TGCATTTGGAAAAAAGG
64 TGCATTTGGAAAAAAAG
* * * *
7758 TGTCAATTATTCCTGTTAGATG-ACGGTTAAATACAGTTGAGTAAAAGATTAATGTCCTAGTTGT
1 TGTCAATTATGCCAGTTAGATGAACGGTTAAATACCG-TGAGTAAAAGATTAATGGCCTAGTTGT
* *
7822 TCATTT-GACAAAAA-
65 GCATTTGGAAAAAAAG
*
7836 -GTCAATTATGCAAGTTAGATGAA
1 TGTCAATTATGCCAGTTAGATGAA
7859 AGGCTAAAGG
Statistics
Matches: 228, Mismatches: 24, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
77 25 0.11
78 6 0.03
79 62 0.27
80 53 0.23
81 45 0.20
82 37 0.16
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.32
Consensus pattern (80 bp):
TGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGTGAGTAAAAGATTAATGGCCTAGTTGTG
CATTTGGAAAAAAAG
Found at i:8024 original size:45 final size:45
Alignment explanation
Indices: 7975--8335 Score: 397
Period size: 45 Copynumber: 8.2 Consensus size: 45
7965 ATAAAAGTCC
* *
7975 TGAAAGGATGACATAATTGAAATGCATATGGGTGCACTATCGGCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* *
8020 TGAAAGGAT---ATAATTGAAATGTATAAGGGTGCATTATCGGCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * *
8062 TGAAAGGATACCATAATTGAAATGCATACGGGTGCATTATTAGG-A
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTA-TCGGCA
* * *
8107 TGAAAAGATG---TCATTGAAATGCATATGGGTGCATTATTGGCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* *
8149 TGAAAGGATGCCATAATTGAAATGAATATGGGTGCATTATCGACA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * *
8194 TGAAAGGATGCCATAACTGAAATGCATATGGGTGGATTATCGACA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
8239 TGAAAGGATGCCATAATTGAAATGCATA----TGCATTATC-GCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * ** * **
8279 TGAAAGTATGTCATAAATAAAAACGCATAAT-GGTGCATTATAAGCA
1 TGAAAGGATGCCAT-AATTGAAATGCAT-ATGGGTGCATTATCGGCA
*
8325 TGAATGGATGC
1 TGAAAGGATGC
8336 TCTCAATGAA
Statistics
Matches: 271, Mismatches: 31, Indels: 27
0.82 0.09 0.08
Matches are distributed among these distances:
40 14 0.05
41 21 0.08
42 74 0.27
45 148 0.55
46 14 0.05
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.27
Consensus pattern (45 bp):
TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
Found at i:8066 original size:87 final size:87
Alignment explanation
Indices: 7975--8268 Score: 385
Period size: 87 Copynumber: 3.3 Consensus size: 87
7965 ATAAAAGTCC
*
7975 TGAAAGGATGACATAATTGAAATGCATATGGGTGCACTATCGGCATGAAAGGATATAATTGAAAT
1 TGAAAGGATGACATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAGGATATAATTGAAAT
* *
8040 GTATAAGGGTGCATTATCGGCA
66 GCATATGGGTGCATTATCGGCA
* * * * *
8062 TGAAAGGAT-ACCATAATTGAAATGCATACGGGTGCATTATTAGG-ATGAAAAGATGTCATTGAA
1 TGAAAGGATGA-CATAATTGAAATGCATATGGGTGCATTA-TCGGCATGAAAGGATATAATTGAA
*
8125 ATGCATATGGGTGCATTATTGGCA
64 ATGCATATGGGTGCATTATCGGCA
* * * *
8149 TGAAAGGATGCCATAATTGAAATGAATATGGGTGCATTATCGACATGAAAGGATGCCATAACTGA
1 TGAAAGGATGACATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAGGAT---ATAATTGA
* *
8214 AATGCATATGGGTGGATTATCGACA
63 AATGCATATGGGTGCATTATCGGCA
*
8239 TGAAAGGATGCCATAATTGAAATGCATATG
1 TGAAAGGATGACATAATTGAAATGCATATG
8269 CATTATCGCA
Statistics
Matches: 178, Mismatches: 22, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
86 3 0.02
87 116 0.65
88 3 0.02
90 56 0.31
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.27
Consensus pattern (87 bp):
TGAAAGGATGACATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAGGATATAATTGAAAT
GCATATGGGTGCATTATCGGCA
Found at i:8167 original size:22 final size:22
Alignment explanation
Indices: 8142--8258 Score: 76
Period size: 22 Copynumber: 5.2 Consensus size: 22
8132 TGGGTGCATT
*
8142 ATTGGCATGAAAGGATGCCATA
1 ATTGACATGAAAGGATGCCATA
* * *
8164 ATTGAAATGAATATGGGTG-CATT
1 ATTGACATGAA-A-GGATGCCATA
*
8187 ATCGACATGAAAGGATGCCATA
1 ATTGACATGAAAGGATGCCATA
* * * * * *
8209 ACTGAAATGCATATGGGTG-GATT
1 ATTGACATG-A-AAGGATGCCATA
*
8232 ATCGACATGAAAGGATGCCATA
1 ATTGACATGAAAGGATGCCATA
8254 ATTGA
1 ATTGA
8259 AATGCATATG
Statistics
Matches: 66, Mismatches: 23, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
21 9 0.14
22 26 0.39
23 22 0.33
24 9 0.14
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.26
Consensus pattern (22 bp):
ATTGACATGAAAGGATGCCATA
Found at i:8242 original size:132 final size:130
Alignment explanation
Indices: 7988--8268 Score: 377
Period size: 132 Copynumber: 2.1 Consensus size: 130
7978 AAGGATGACA
*
7988 TAATTGAAATGCATATGGGTGCACTATCGGCATGAAAGGATATAATTGAAATGTATAAGGGTGCA
1 TAATTGAAATGCATATGGGTGCACTATCGGCATGAAAGGATATAATTGAAATGAATAAGGGTGCA
* * * *
8053 TTATCGGCATGAAAGGATACCATAATTGAAATGCATACGGGTGCATTATTAGGATGAAAAGATG-
66 TTATCGACATGAAAGGATACCATAACTGAAATGCATACGGGTGCATTATGAGCATGAAAAGATGC
* * * *
8117 TCATTGAAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAATTGAAATGAATATGGGT
1 TAATTGAAATGCATATGGGTGCACTATCGGCATGAAAGGAT---ATAATTGAAATGAATAAGGGT
* * * *
8182 GCATTATCGACATGAAAGGATGCCATAACTGAAATGCATATGGGTGGATTATCGA-CATGAAAGG
63 GCATTATCGACATGAAAGGATACCATAACTGAAATGCATACGGGTGCATTAT-GAGCATGAAAAG
8246 ATGCC
127 ATG-C
8251 ATAATTGAAATGCATATG
1 -TAATTGAAATGCATATG
8269 CATTATCGCA
Statistics
Matches: 131, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
129 38 0.29
132 76 0.58
133 1 0.01
135 16 0.12
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.27
Consensus pattern (130 bp):
TAATTGAAATGCATATGGGTGCACTATCGGCATGAAAGGATATAATTGAAATGAATAAGGGTGCA
TTATCGACATGAAAGGATACCATAACTGAAATGCATACGGGTGCATTATGAGCATGAAAAGATGC
Found at i:19364 original size:22 final size:23
Alignment explanation
Indices: 19326--19368 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
19316 TGTTATGTTG
19326 TTTATAACATTTTTAGGTCACGC
1 TTTATAACATTTTTAGGTCACGC
*
19349 TTTATAATA-TTTTAGGTCAC
1 TTTATAACATTTTTAGGTCAC
19369 ACATTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.47
Consensus pattern (23 bp):
TTTATAACATTTTTAGGTCACGC
Found at i:23513 original size:21 final size:21
Alignment explanation
Indices: 23488--23557 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
23478 ATACTTACCA
23488 TTATTCCATAAGCTCGTAAGC
1 TTATTCCATAAGCTCGTAAGC
* * * *
23509 TTATTTTACCA-AAACAC-TTACC
1 TTA--TT-CCATAAGCTCGTAAGC
23531 ATTATTCCATAAGCTCGTAAGC
1 -TTATTCCATAAGCTCGTAAGC
23553 TTATT
1 TTATT
23558 TTACCCATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 3 0.09
21 14 0.40
22 6 0.17
23 9 0.26
24 3 0.09
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (21 bp):
TTATTCCATAAGCTCGTAAGC
Found at i:23515 original size:44 final size:44
Alignment explanation
Indices: 23384--23697 Score: 378
Period size: 44 Copynumber: 7.3 Consensus size: 44
23374 AATTTCTTAT
* *
23384 CAATATACATACCATTTAATCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
23429 CAATATACTTACCATTAAATCCCTAAGCTCGTAAGCTTATTTTAT
1 CAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTAC
23474 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* *
23518 CAAAACACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
23562 CCATATACATACCATTATTCCATAAACTCGT-A----A---TAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
23598 CAATATACTTACCAATAAATACC-TAAGCTCGTAAGCTTATTTTAT
1 CAATATACTTACC-AT-TATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
23643 CAATATACTTACTATAATTTCATAAGCTCGTAAGCTTA-TTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
23686 CAATATACTTAC
1 CAATATACTTAC
23698 TATAATTTGC
Statistics
Matches: 234, Mismatches: 23, Indels: 26
0.83 0.08 0.09
Matches are distributed among these distances:
36 14 0.06
37 10 0.04
38 5 0.02
39 1 0.00
42 1 0.00
43 21 0.09
44 113 0.48
45 69 0.29
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.36
Consensus pattern (44 bp):
CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
Found at i:23704 original size:43 final size:44
Alignment explanation
Indices: 23595--23705 Score: 161
Period size: 43 Copynumber: 2.5 Consensus size: 44
23585 AAACTCGTAA
* * * *
23595 TACCAATATACTTACCAATAAATACCTAAGCTCGTAAGCTTATTT
1 TACCAATATACTTA-CTATAATTTCATAAGCTCGTAAGCTTATTT
*
23640 TATCAATATACTTACTATAATTTCATAAGCTCGTAAGCTTA-TT
1 TACCAATATACTTACTATAATTTCATAAGCTCGTAAGCTTATTT
23683 TACCAATATACTTACTATAATTT
1 TACCAATATACTTACTATAATTT
23706 GCATCACTGA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 24 0.40
44 23 0.38
45 13 0.22
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.39
Consensus pattern (44 bp):
TACCAATATACTTACTATAATTTCATAAGCTCGTAAGCTTATTT
Found at i:23901 original size:59 final size:60
Alignment explanation
Indices: 23838--23972 Score: 148
Period size: 61 Copynumber: 2.2 Consensus size: 60
23828 TATCATATAC
* * *
23838 TTAATATGATTTCCT-CC-TCATTTTAGCACACAAAGTGCCCTATGCGAGAATCTATACCA
1 TTAATATGATTTCCTACCAT-ATTTTAGCACACAAAGTGCCCTATACGAAAATCCATACCA
* * ** * *
23897 TTAATATGATTTCTTTACCATTTTTTAGCACATGAAGTGCCCTATATGAAAATCCATACTA
1 TTAATATGATTTC-CTACCATATTTTAGCACACAAAGTGCCCTATACGAAAATCCATACCA
*
23958 TTAGTATGATTTCCT
1 TTAATATGATTTCCT
23973 TATCCTTGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
59 13 0.21
60 2 0.03
61 46 0.74
62 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (60 bp):
TTAATATGATTTCCTACCATATTTTAGCACACAAAGTGCCCTATACGAAAATCCATACCA
Found at i:24009 original size:59 final size:58
Alignment explanation
Indices: 23782--24278 Score: 346
Period size: 59 Copynumber: 8.4 Consensus size: 58
23772 TATACAATTC
* * * * * * *
23782 GTATAATTTCCTTATAATATTAGCACTCTCAGTGCTCTATCTGGAATAT-CATATACTTA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGC-CTATTTGGAA-ATCCATACACTCA
* ** ** * *
23841 ATATGATTTCCTCCTCATTTTAGCACACAAAGTGCCCTA--TGCGAGAATCTATAC-CATTA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTG-CCTATTTG-GA-AATCCATACAC-TCA
* * * * * * *
23900 ATATGATTTCTTTACCATTTTTTAGCACA-TGAAGTGCCCTATATGAAAATCCATACTA-TTA
1 GTATGATTTCCTTATCA--TTTTAGCACACT-CAGTG-CCTATTTGGAAATCCATAC-ACTCA
* * * * *
23961 GTATGATTTCCTTATCCTTGTAGCACCCTTAGTGCCTTTTCTGGAAATCCATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCCTATT-TGGAAATCCATACACTCA
* * * * * *
24020 GTATGA-TCCTCTTACCGTTTTAGCACA-TATAGTGCCCTATTTGGAAATCCATATATTCA
1 GTATGATTTC-CTTATCATTTTAGCACACT-CAGTG-CCTATTTGGAAATCCATACACTCA
* * *
24079 ATATGATTT-CTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGC-CTATTTGGAAATCCATACACTCA
* * * * *
24137 GTATGATTTCATTATCATTTTAGCACACTCAGTGCTCCATATAGAAATCTATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGC-CTATTTGGAAATCCATACACTCA
* * * * *
24196 TTATGATTTCCTTATCGTTTTAGCACACTCAGTTCTCCATATGGAAATCCATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGC-CTATTTGGAAATCCATACACTCA
* *
24255 GAATGATTTCCTTACCATTTTAGC
1 GTATGATTTCCTTATCATTTTAGC
24279 GCATATAGTG
Statistics
Matches: 356, Mismatches: 60, Indels: 44
0.77 0.13 0.10
Matches are distributed among these distances:
57 3 0.01
58 59 0.17
59 239 0.67
60 8 0.02
61 44 0.12
62 1 0.00
63 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (58 bp):
GTATGATTTCCTTATCATTTTAGCACACTCAGTGCCTATTTGGAAATCCATACACTCA
Found at i:24071 original size:118 final size:117
Alignment explanation
Indices: 23812--24290 Score: 442
Period size: 118 Copynumber: 4.1 Consensus size: 117
23802 TAGCACTCTC
* * ** **
23812 AGTGCTCTATCTGGAATAT-CATA-TACTTAATATGATTTCCTCCTCATTTTAGCACACAAAGTG
1 AGTGCCCTATATGGAA-ATCCATACTA-TTAATATGATTTCCTTATCATTTTAGCACACTCAGTG
* * *
23875 C-CC-TATGCGAGAATCTATAC-CATTAATATGATTTCTTTACCATTTTTTAGCACATGA-
64 CTCCATATG-GA-AATCCATACAC-TCAGTATGATTTC-TTACCA--TTTTAGCACAT-AT
* * * * * *
23932 AGTGCCCTATATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACCCTTAGTGC-
1 AGTGCCCTATATGGAAATCCATACTATTAATATGATTTCCTTATCATTTTAGCACACTCAGTGCT
** * * *
23996 CTTTTCTGGAAATCCATACACTCAGTATGATCCTCTTACCGTTTTAGCACATAT
66 C-CATATGGAAATCCATACACTCAGTATGAT-TTCTTACCATTTTAGCACATAT
*
24050 AGTGCCCTATTTGGAAATCCATA-TATTCAATATGATTT-CTTATCATTTTAGCACACTCAGTGC
1 AGTGCCCTATATGGAAATCCATACTATT-AATATGATTTCCTTATCATTTTAGCACACTCAGTGC
* *
24113 TCCATATGGAAATCCATACACTCAGTATGATTTCATTATCATTTTAGCACACT-C
65 TCCATATGGAAATCCATACACTCAGTATGATTTC-TTACCATTTTAGCACA-TAT
* * * * * *
24167 AGTGCTCC-ATATAGAAATCTATAC-ACTCATTATGATTTCCTTATCGTTTTAGCACACTCAGTT
1 AGTGC-CCTATATGGAAATCCATACTA-TTAATATGATTTCCTTATCATTTTAGCACACTCAGTG
* *
24230 CTCCATATGGAAATCCATACACTCAGAATGATTTCCTTACCATTTTAGCGCATAT
64 CTCCATATGGAAATCCATACACTCAGTATGATTT-CTTACCATTTTAGCACATAT
24285 AGTGCC
1 AGTGCC
24291 ATTTGGTAAT
Statistics
Matches: 299, Mismatches: 43, Indels: 37
0.79 0.11 0.10
Matches are distributed among these distances:
116 2 0.01
117 95 0.32
118 120 0.40
119 3 0.01
120 69 0.23
121 7 0.02
122 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (117 bp):
AGTGCCCTATATGGAAATCCATACTATTAATATGATTTCCTTATCATTTTAGCACACTCAGTGCT
CCATATGGAAATCCATACACTCAGTATGATTTCTTACCATTTTAGCACATAT
Found at i:24193 original size:176 final size:176
Alignment explanation
Indices: 23899--24278 Score: 398
Period size: 176 Copynumber: 2.1 Consensus size: 176
23889 CTATACCATT
*
23899 AATATGATTTCTTTACCATTTTTTAGCACATGAAGTGCCCTATATGAAAATCCATACTATTAGTA
1 AATATGATTTC-TTACCA--TTTTAGCACATGAAGTGCCCTATATGAAAATCCATACTATCAGTA
* * * * ** * *
23964 TGATTTCCTTATCCTTGTAGCACCCTTAGTGCCTTTTCTGGAAATCCATACACTCAGTATGATC-
63 TGATTTCATTATCATTGTAGCACACTCAGTGCCTCATATAGAAATCCATACACTCAGTATGATCT
* * * *
24028 CTCTTACCGTTTTAGCACA-TATAGTGC-CCTATTTGGAAATCCATATATTC
128 C-CTTACCGTTTTAGCACACT-CAGTGCTCC-ATATGGAAATCCATACACTC
* * *
24078 AATATGATTTCTTATCATTTTAGCACACT-CAGTGCTCC-ATATGGAAATCCATAC-ACTCAGTA
1 AATATGATTTCTTACCATTTTAGCACA-TGAAGTGC-CCTATATGAAAATCCATACTA-TCAGTA
* * * *
24140 TGATTTCATTATCATTTTAGCACACTCAGTG-CTCCATATAGAAATCTATACACTCATTATGATT
63 TGATTTCATTATCATTGTAGCACACTCAGTGCCT-CATATAGAAATCCATACACTCAGTATGATC
* *
24204 TCCTTATCGTTTTAGCACACTCAGTTCTCCATATGGAAATCCATACACTC
127 TCCTTACCGTTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTC
24254 AGA-ATGATTTCCTTACCATTTTAGC
1 A-ATATGATTT-CTTACCATTTTAGC
24279 GCATATAGTG
Statistics
Matches: 169, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
175 3 0.02
176 129 0.76
177 21 0.12
178 5 0.03
179 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (176 bp):
AATATGATTTCTTACCATTTTAGCACATGAAGTGCCCTATATGAAAATCCATACTATCAGTATGA
TTTCATTATCATTGTAGCACACTCAGTGCCTCATATAGAAATCCATACACTCAGTATGATCTCCT
TACCGTTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTC
Found at i:29629 original size:44 final size:44
Alignment explanation
Indices: 29544--29812 Score: 322
Period size: 44 Copynumber: 6.3 Consensus size: 44
29534 AATTTCTTAT
* * * *
29544 CAATATACATACCATTAAATCCCTAAGCTCGTAAGCTTATTTTAT
1 CAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTAC
*
29589 CAATATATTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
*
29633 CAATACACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* *
29677 CCATATACTTACCATTATTCCATAAACTCGT-A----A---TAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * * *
29713 CAATATACTTACCAATAAATCCCTAAGCTCGTAAGCTTATTTTAT
1 CAATATACTTACC-ATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
29758 CAATATACTTACTATAATTTCATAAGCTCGTAAGCTTA-TTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
29801 CAATATACTTAC
1 CAATATACTTAC
29813 TATAATTTGC
Statistics
Matches: 194, Mismatches: 21, Indels: 20
0.83 0.09 0.09
Matches are distributed among these distances:
36 15 0.08
37 14 0.07
38 1 0.01
39 1 0.01
42 1 0.01
43 17 0.09
44 117 0.60
45 28 0.14
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.37
Consensus pattern (44 bp):
CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
Found at i:29751 original size:81 final size:80
Alignment explanation
Indices: 29630--29790 Score: 223
Period size: 81 Copynumber: 2.0 Consensus size: 80
29620 AAGCTTATTT
* * * *
29630 TACCAATACACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCCATATACTTACCATTAT
1 TACCAATACACTTACCATAAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATAAT
29695 TCCATAAACTCGTAA
66 TCCATAAACTCGTAA
* * * *
29710 TACCAATATACTTACCAATAAATCCCTAAGCTCGTAAGCTTATTTTATCAATATACTTACTATAA
1 TACCAATACACTTACC-ATAAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATAA
* *
29775 TTTCATAAGCTCGTAA
65 TTCCATAAACTCGTAA
29791 GCTTATTTAC
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
80 15 0.21
81 55 0.79
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (80 bp):
TACCAATACACTTACCATAAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATAAT
TCCATAAACTCGTAA
Found at i:29755 original size:125 final size:123
Alignment explanation
Indices: 29589--29812 Score: 340
Period size: 125 Copynumber: 1.8 Consensus size: 123
29579 CTTATTTTAT
* * * *
29589 CAATATATTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATACACTTACCATTATTCC
1 CAATATACTTACCATAAATCCATAAGCTCGTAAGCTTATTTTACCAATACACTTACCATAATTCC
*
29654 ATAAGCTCGTAAGCTTATTTTACCCATATACTTACCATTATTCCATAAACTCGTAATAC
66 ATAAGCTCGTAAGCTTA-TTTACCAATATACTTACCATTATTCCATAAACTCGTAATAC
* * * * *
29713 CAATATACTTACCAATAAATCCCTAAGCTCGTAAGCTTATTTTATCAATATACTTACTATAATTT
1 CAATATACTTACC-ATAAATCCATAAGCTCGTAAGCTTATTTTACCAATACACTTACCATAATTC
29778 CATAAGCTCGTAAGCTTATTTACCAATATACTTAC
65 CATAAGCTCGTAAGCTTATTTACCAATATACTTAC
29813 TATAATTTGC
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
124 28 0.31
125 61 0.69
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.37
Consensus pattern (123 bp):
CAATATACTTACCATAAATCCATAAGCTCGTAAGCTTATTTTACCAATACACTTACCATAATTCC
ATAAGCTCGTAAGCTTATTTACCAATATACTTACCATTATTCCATAAACTCGTAATAC
Found at i:30016 original size:59 final size:61
Alignment explanation
Indices: 29953--30085 Score: 164
Period size: 61 Copynumber: 2.2 Consensus size: 61
29943 TATCATATAC
* *
29953 TTAATATGATTT-TCT-CC-TCATTTTAGCACACGAAGTGCCCTATGCGAGAATCTATACCA
1 TTAATATGATTTCTCTACCAT-ATTTTAGCACACGAAGTGCCCTATACGAAAATCTATACCA
* * * * *
30012 TTAATATGATTTCTTTACCATTTTTTAGCACATGAAGTGCCCTATATGAAAATCTATACTA
1 TTAATATGATTTCTCTACCATATTTTAGCACACGAAGTGCCCTATACGAAAATCTATACCA
*
30073 TTAGTATGATTTC
1 TTAATATGATTTC
30086 CTTATCCTTG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
59 12 0.19
60 2 0.03
61 48 0.76
62 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (61 bp):
TTAATATGATTTCTCTACCATATTTTAGCACACGAAGTGCCCTATACGAAAATCTATACCA
Found at i:30395 original size:59 final size:61
Alignment explanation
Indices: 30332--30463 Score: 146
Period size: 62 Copynumber: 2.2 Consensus size: 61
30322 ATATACTTAA
* *
30332 TATGATTTCCT-CC-TCGTTTTAGCACACGAAGT-CCACTATGCGAGAATCCATACTATTAG
1 TATGATTTCCTACCATCGTTTTAGCACACGAAGTGCC-CTATACGAAAATCCATACTATTAG
** * * *
30391 TATGA-TTCCTTTACCATTTTTTTAGCACATGAAGTGCCCTTTATGAAAATCCATACTATTAG
1 TATGATTTCC--TACCATCGTTTTAGCACACGAAGTGCCCTATACGAAAATCCATACTATTAG
30453 TATGATTTCCT
1 TATGATTTCCT
30464 TATCCTTGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
58 4 0.07
59 5 0.08
60 1 0.02
61 3 0.05
62 41 0.68
63 6 0.10
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (61 bp):
TATGATTTCCTACCATCGTTTTAGCACACGAAGTGCCCTATACGAAAATCCATACTATTAG
Found at i:30505 original size:59 final size:59
Alignment explanation
Indices: 30272--30768 Score: 410
Period size: 59 Copynumber: 8.4 Consensus size: 59
30262 TAAACAATTC
* * * * * * *
30272 GTATAATTTCCTTATAATATTAGCACTCTCAGTGCTCTATATGGAATAT-CATATACTTA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCCCTATATGGAA-ATCCATACACTCA
* ** * ** *
30331 ATATGATTTCCTCCTCGTTTTAGCACACGAAGT--CC-ACTATGCGAGAATCCATACTA-TTA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCCCTA-TATG-GA-AATCCATAC-ACTCA
* * * * *
30390 GTATGA-TTCCTTTACCATTTTTTTAGCACA-TGAAGTGCCCTTTATGAAAATCCATACTA-TTA
1 GTATGATTTCC-TTATCA---TTTTAGCACACT-CAGTGCCCTATATGGAAATCCATAC-ACTCA
* * * * * * *
30452 GTATGATTTCCTTATCCTTGTAGCACCCTTAGTGCCTTTTTTGGAAATCCATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCCCTATATGGAAATCCATACACTCA
* * * * * *
30511 GTATGA-TTCTCTTACCTTTTTAGCACA-TATAGTGCCCTATCTGGAAATCCATATATTCA
1 GTATGATTTC-CTTATCATTTTAGCACACT-CAGTGCCCTATATGGAAATCCATACACTCA
*
30570 ATATGATTT-CTTATCATTTTAGCACACTCAGTGCTCC-ATATGGAAATCCATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGC-CCTATATGGAAATCCATACACTCA
*
30628 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCC-ATATGGAAATCTATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGC-CCTATATGGAAATCCATACACTCA
* *
30687 TTATGATTTCCTTATCATTTTAGCACACTCAGTACTCC-ATATGGAAATCCATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGC-CCTATATGGAAATCCATACACTCA
* *
30746 GTATGATATCCTTACCATTTTAG
1 GTATGATTTCCTTATCATTTTAG
30769 TGCATATAGT
Statistics
Matches: 363, Mismatches: 53, Indels: 44
0.79 0.12 0.10
Matches are distributed among these distances:
56 1 0.00
57 5 0.01
58 59 0.16
59 245 0.67
60 4 0.01
62 38 0.10
63 5 0.01
64 6 0.02
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (59 bp):
GTATGATTTCCTTATCATTTTAGCACACTCAGTGCCCTATATGGAAATCCATACACTCA
Found at i:30585 original size:375 final size:376
Alignment explanation
Indices: 29863--30623 Score: 1314
Period size: 376 Copynumber: 2.0 Consensus size: 376
29853 TCGTTATTGG
*
29863 AATCCATACATTCCATAGGAAATTTATACAATTCGTATAATTTCCTTATAATATTAGCACTCTCA
1 AATCCATACATTCCATAGGAAATTTAAACAATTCGTATAATTTCCTTATAATATTAGCACTCTCA
* *
29928 GTGCTCTATCTGGAATATCATATACTTAATATGATTTTCTCCTCATTTTAGCACACGAAGTGCCC
66 GTGCTCTATATGGAATATCATATACTTAATATGATTTCCTCCTCATTTTAGCACACGAAGTGCCC
* *
29993 TATGCGAGAATCTATACCATTAATATGATTTCTTTACCATTTTTTAGCACATGAAGTGCCCTATA
131 TATGCGAGAATCCATACCATTAATATGATTCCTTTACCATTTTTTAGCACATGAAGTGCCCTATA
*
30058 TGAAAATCTATACTATTAGTATGATTTCCTTATCCTTGTAGCACCCTTAGTGCTTTTTCTGGAAA
196 TGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACCCTTAGTGCTTTTTCTGGAAA
30123 TCCACACACTCAGAATGATTCTCTTACAATTTTAGCACATATAATACCCTATCTAGAAATCCATA
261 TCCACACACTCAGAATGATTCTCTTACAATTTTAGCACATATAATACCCTATCTAGAAATCCATA
30188 TATTCAATATGATTTCCTTATCA-TTTAGCACACTCAGTGCTCCATATGGA
326 TATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGA
30238 AATCCATACATTCCATAGGAAATTTAAACAATTCGTATAATTTCCTTATAATATTAGCACTCTCA
1 AATCCATACATTCCATAGGAAATTTAAACAATTCGTATAATTTCCTTATAATATTAGCACTCTCA
*
30303 GTGCTCTATATGGAATATCATATACTTAATATGATTTCCTCCTCGTTTTAGCACACGAAGT-CCA
66 GTGCTCTATATGGAATATCATATACTTAATATGATTTCCTCCTCATTTTAGCACACGAAGTGCC-
* * *
30367 CTATGCGAGAATCCATACTATTAGTATGATTCCTTTACCATTTTTTTAGCACATGAAGTGCCCTT
130 CTATGCGAGAATCCATACCATTAATATGATTCCTTTACCA-TTTTTTAGCACATGAAGTGCCCTA
30432 TATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACCCTTAGTGCCTTTTT-TGG
194 TATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACCCTTAGTG-CTTTTTCTGG
* * ** * * *
30496 AAATCCATACACTCAGTATGATTCTCTTACCTTTTTAGCACATATAGTGCCCTATCTGGAAATCC
258 AAATCCACACACTCAGAATGATTCTCTTACAATTTTAGCACATATAATACCCTATCTAGAAATCC
30561 ATATATTCAATATGATTT-CTTATCATTTTAGCACACTCAGTGCTCCATATGGA
323 ATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGA
30614 AATCCATACA
1 AATCCATACA
30624 CTCAGTATGA
Statistics
Matches: 365, Mismatches: 17, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
374 2 0.01
375 165 0.45
376 192 0.53
377 6 0.02
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (376 bp):
AATCCATACATTCCATAGGAAATTTAAACAATTCGTATAATTTCCTTATAATATTAGCACTCTCA
GTGCTCTATATGGAATATCATATACTTAATATGATTTCCTCCTCATTTTAGCACACGAAGTGCCC
TATGCGAGAATCCATACCATTAATATGATTCCTTTACCATTTTTTAGCACATGAAGTGCCCTATA
TGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACCCTTAGTGCTTTTTCTGGAAA
TCCACACACTCAGAATGATTCTCTTACAATTTTAGCACATATAATACCCTATCTAGAAATCCATA
TATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGA
Found at i:30659 original size:31 final size:31
Alignment explanation
Indices: 30621--30720 Score: 84
Period size: 31 Copynumber: 3.3 Consensus size: 31
30611 GGAAATCCAT
30621 ACACTCAGTATGATTTCCTTATCATTTTAGC
1 ACACTCAGTATGATTTCCTTATCATTTTAGC
* * * * * *
30652 ACACTCAG--TG--CTCCATATGGAAATCTA-T
1 ACACTCAGTATGATTTCCTTAT--CATTTTAGC
*
30680 ACACTCATTATGATTTCCTTATCATTTTAGC
1 ACACTCAGTATGATTTCCTTATCATTTTAGC
30711 ACACTCAGTA
1 ACACTCAGTA
30721 CTCCATATGG
Statistics
Matches: 48, Mismatches: 14, Indels: 14
0.63 0.18 0.18
Matches are distributed among these distances:
27 6 0.12
28 7 0.15
29 6 0.12
30 6 0.12
31 17 0.35
32 6 0.12
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (31 bp):
ACACTCAGTATGATTTCCTTATCATTTTAGC
Found at i:30734 original size:176 final size:174
Alignment explanation
Indices: 30272--30768 Score: 445
Period size: 176 Copynumber: 2.8 Consensus size: 174
30262 TAAACAATTC
* * * * * *
30272 GTATAATTTCCTTATAATATTAGCACTCTCAGTGCTCTATATGGAATATCATATACTTAATATGA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAA-ATCATACACTCAATATGA
** * * *
30337 TTTCCTCCTCGTTTTAGCACA-C-GAAGTCCACTATGCGAGAATCCATACTATT-AGTATGATTC
65 TTTCCTTATCATTTTAGCACATCAGTACTCCA-TATG-GA-AATCCATA-TATTCAGTATGATTC
* *
30399 CTTTACCATTTTTTTAGCACATGAAGTGCCCTTTATGAAAATCCATACTATTA
126 C-TTACCA---TTTTAGCACATGAAGTGCCCTATATGAAAATCCATACTATCA
* * * * * * *
30452 GTATGATTTCCTTATCCTTGTAGCACCCTTAGTGC-CTTTTTTGGAAATCCATACACTCAGTATG
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTC-TATATGGAAAT-CATACACTCAATATG
* * * * * * *
30516 A-TTCTCTTACCTTTTTAGCACATATAGTGC-CCTATCTGGAAATCCATATATTCAATATGATTT
64 ATTTC-CTTATCATTTTAGCACAT-CAGTACTCC-ATATGGAAATCCATATATTCAGTATGATTC
* * *
30579 CTTATCATTTTAGCACACT-CAGTGCTCC-ATATGGAAATCCATAC-ACTCA
126 CTTACCATTTTAGCACA-TGAAGTGC-CCTATATGAAAATCCATACTA-TCA
* *
30628 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCTATACACTCATTATGA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAATC-ATACACTCAATATGA
* *
30693 TTTCCTTATCATTTTAGCACACTCAGTACTCCATATGGAAATCCATACACTCAGTATGATATCCT
65 TTTCCTTATCATTTTAGCACA-TCAGTACTCCATATGGAAATCCATATATTCAGTATGAT-TCCT
30758 TACCATTTTAG
128 TACCATTTTAG
30769 TGCATATAGT
Statistics
Matches: 254, Mismatches: 46, Indels: 37
0.75 0.14 0.11
Matches are distributed among these distances:
175 2 0.01
176 127 0.50
177 23 0.09
179 15 0.06
180 78 0.31
181 2 0.01
182 5 0.02
183 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (174 bp):
GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAATCATACACTCAATATGAT
TTCCTTATCATTTTAGCACATCAGTACTCCATATGGAAATCCATATATTCAGTATGATTCCTTAC
CATTTTAGCACATGAAGTGCCCTATATGAAAATCCATACTATCA
Found at i:30798 original size:118 final size:115
Alignment explanation
Indices: 30493--30800 Score: 390
Period size: 118 Copynumber: 2.6 Consensus size: 115
30483 GTGCCTTTTT
* * *
30493 TGGAAATCCATACACTCAGTATGATTCTCTTACCTTTTTAGCACATATAGTGCCCTATCTGGAAA
1 TGGAAATCCATACACTCAGTATGATTC-CTTACCATTTTAG-GCATATAGTGCCC-ATATGGAAA
* * *
30558 TCC-ATATATTCAATATGATTTCTTATCATTTTAGCACACTCAGTGCTCCATA
63 TCCTATACACTCAATATGATTTCTTATCATTTTAGCACACTCAGTACTCCATA
* *
30610 TGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTA-GCACACTCAGTGCTCCATATGGAA
1 TGGAAATCCATACACTCAGTATGA-TTCCTTACCATTTTAGGCATA-T-AGTGC-CCATATGGAA
*
30674 AT-CTATACACTCATTATGATTTCCTTATCATTTTAGCACACTCAGTACTCCATA
62 ATCCTATACACTCAATATGATTT-CTTATCATTTTAGCACACTCAGTACTCCATA
* *
30728 TGGAAATCCATACACTCAGTATGATATCCTTACCATTTTAGTGCATATAGTG-CCATTTGGTAAT
1 TGGAAATCCATACACTCAGTATGAT-TCCTTACCATTTTAG-GCATATAGTGCCCATATGGAAAT
30792 CACTATACA
64 C-CTATACA
30801 TACATTAATA
Statistics
Matches: 167, Mismatches: 13, Indels: 21
0.83 0.06 0.10
Matches are distributed among these distances:
115 3 0.02
116 12 0.07
117 64 0.38
118 83 0.50
119 1 0.01
120 4 0.02
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (115 bp):
TGGAAATCCATACACTCAGTATGATTCCTTACCATTTTAGGCATATAGTGCCCATATGGAAATCC
TATACACTCAATATGATTTCTTATCATTTTAGCACACTCAGTACTCCATA
Found at i:30800 original size:59 final size:58
Alignment explanation
Indices: 30493--30800 Score: 253
Period size: 59 Copynumber: 5.3 Consensus size: 58
30483 GTGCCTTTTT
* * * *
30493 TGGAAATCC-ATACACTCAGTATGA-TTCTCTTACCTTTTTAGCACATA-TAGTGCCCTATC
1 TGGAAATCCTATACACTCAGTATGATTTC-CTTATCATTTTAG-GCATACTAGTG-CC-ATA
* * * *
30552 TGGAAATCC-ATATATTCAATATGATTT-CTTATCATTTTA-GCACACTCAGTGCTCCATA
1 TGGAAATCCTATACACTCAGTATGATTTCCTTATCATTTTAGGCATACT-AGTG--CCATA
*
30610 TGGAAATCC-ATACACTCAGTATGATTTCCTTATCATTTTA-GCACACTCAGTGCTCCATA
1 TGGAAATCCTATACACTCAGTATGATTTCCTTATCATTTTAGGCATACT-AGTG--CCATA
* * *
30669 TGGAAAT-CTATACACTCATTATGATTTCCTTATCATTTTA-GCACACTCAGTACTCCATA
1 TGGAAATCCTATACACTCAGTATGATTTCCTTATCATTTTAGGCATACT-AGT--GCCATA
* * *
30728 TGGAAATCC-ATACACTCAGTATGATATCCTTACCATTTTAGTGCATA-TAGTGCCATT
1 TGGAAATCCTATACACTCAGTATGATTTCCTTATCATTTTAG-GCATACTAGTGCCATA
*
30785 TGGTAATCACTATACA
1 TGGAAATC-CTATACA
30801 TACATTAATA
Statistics
Matches: 215, Mismatches: 21, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
56 3 0.01
57 12 0.06
58 42 0.20
59 150 0.70
60 4 0.02
61 4 0.02
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (58 bp):
TGGAAATCCTATACACTCAGTATGATTTCCTTATCATTTTAGGCATACTAGTGCCATA
Found at i:36166 original size:44 final size:44
Alignment explanation
Indices: 36035--36356 Score: 443
Period size: 44 Copynumber: 7.3 Consensus size: 44
36025 AATTTCTTAT
*
36035 CAATATACATACCATTTAATT-CATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCA-TT-ATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
36080 CAATATACTTACCATTAAATCCCTAAGCTCGTAAGCTTATTTTAG
1 CAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTAC
36125 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* *
36169 CAATATACTTACCAATAATCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* *
36213 CCATATACTTACCATTATTCCATAAACTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * * * *
36257 CAATATACTTACCATTAAATCCCTAATCTTGTAAGCTTATTTTAT
1 CAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTAC
* *
36302 CAATATACTTACTATAAATT-CATAAGCTCGTAAGCTTA-TTTAC
1 CAATATACTTACCAT-TATTCCATAAGCTCGTAAGCTTATTTTAC
36345 CAATATACTTAC
1 CAATATACTTAC
36357 TATAATTTCC
Statistics
Matches: 248, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
43 16 0.06
44 142 0.57
45 90 0.36
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (44 bp):
CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
Found at i:36560 original size:59 final size:61
Alignment explanation
Indices: 36497--36632 Score: 154
Period size: 62 Copynumber: 2.2 Consensus size: 61
36487 TATCATATAC
* *
36497 TTAATATGATTTCCT-CC-TCATTTTAGCACACT-AAGTGCCCTATGCGAGAATCCATACCA
1 TTAATATGATTTCCTACCATCATTTTAGCACA-TGAAGTGCCCTATACGAAAATCCATACCA
** * *
36556 TTAATATGA-TTCCTTTACCATTTTTTTAGCACATGAAGTGCCCTATATGAAAATCCATACTA
1 TTAATATGATTTCC--TACCATCATTTTAGCACATGAAGTGCCCTATACGAAAATCCATACCA
*
36618 TTAGTATGATTTCCT
1 TTAATATGATTTCCT
36633 TATCCTTGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
58 4 0.06
59 9 0.14
60 1 0.02
61 4 0.06
62 42 0.66
63 4 0.06
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (61 bp):
TTAATATGATTTCCTACCATCATTTTAGCACATGAAGTGCCCTATACGAAAATCCATACCA
Found at i:37153 original size:375 final size:376
Alignment explanation
Indices: 36407--37167 Score: 1280
Period size: 375 Copynumber: 2.0 Consensus size: 376
36397 TCTTTATTGG
* *
36407 AATCCATACATTCCATAGGAAATTTATACAATTCGTATACTTTCCTTATAATATTAGCACTCTCA
1 AATCCATACATTCCATAGGAAATTTATACAATTCGTATAATTTCCTTATAATATTAGCACACTCA
*
36472 GTGCTCTATCTGGAATATCATATACTTAATATGATTTCCTCCTCATTTTAGCACACTAAGTGCCC
66 GTGCTCTATCTGGAATATCATATACTTAATATGATTTCCTCCTCATTTTAGCACACGAAGTGCCC
* *
36537 TATGCGAGAATCCATACCATTAATATGATTCCTTTACCATTTTTTTAGCACATGAAGTGCCCTAT
131 TATACGAGAATCCATACCATTAATATGATTCATTTACCATTTTTTTAGCACATGAAGTGCCCTAT
36602 ATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACTCATAGTGCTTTTTCTGGAA
196 ATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACTCATAGTGCTTTTTCTGGAA
* *
36667 ATCCATACACTCATTATGTTTCTCTTACCATTTTAGCACATATAATGCCCTATCTGGAAATCCAT
261 ATCCATACACTCAGTATGATTCTCTTACCATTTTAGCACATATAATGCCCTATCTGGAAATCCAT
36732 ATATTCAATATGAGTTCTTATCATTTTAGCACACTCAGTGCTCCATATGGA
326 ATATTCAATATGAGTTCTTATCATTTTAGCACACTCAGTGCTCCATATGGA
36783 AATCCATACATTCCATAGGAAATTTATACAA-TCAGTATAATTTCCTTATAATATTAGCACACTC
1 AATCCATACATTCCATAGGAAATTTATACAATTC-GTATAATTTCCTTATAATATTAGCACACTC
* * *
36847 AGTTCTCTATCTGGAATATCATATACTTAATATGATTTCCTCCTTATTTTAGCACACGGAGTGCC
65 AGTGCTCTATCTGGAATATCATATACTTAATATGATTTCCTCCTCATTTTAGCACACGAAGTGCC
* * * *
36912 TTGTACGAGAATCCATACCATTAGTATGATTCATTTACCA-TTTTTTAGCATATGAAGTGCCCTA
130 CTATACGAGAATCCATACCATTAATATGATTCATTTACCATTTTTTTAGCACATGAAGTGCCCTA
* *
36976 TATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTGGCAAC-C-TGAGTGTTTTTTCTG
195 TATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGC-ACTCAT-AGTGCTTTTTCTG
37039 GAAATCCATACACTCAGTATGATTCTCTTACCATTTTAGCACATATAATGCCCTATCTGGAAATC
258 GAAATCCATACACTCAGTATGATTCTCTTACCATTTTAGCACATATAATGCCCTATCTGGAAATC
* * *
37104 CATATATTCAGTATTATTTTCTTATCATTTTAG-ACACTCAGTGCTCCATATGGA
323 CATATATTCAATATGA-GTTCTTATCATTTTAGCACACTCAGTGCTCCATATGGA
37158 AATCCATACA
1 AATCCATACA
37168 CTAAGTATGA
Statistics
Matches: 362, Mismatches: 19, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
374 1 0.00
375 189 0.52
376 172 0.48
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (376 bp):
AATCCATACATTCCATAGGAAATTTATACAATTCGTATAATTTCCTTATAATATTAGCACACTCA
GTGCTCTATCTGGAATATCATATACTTAATATGATTTCCTCCTCATTTTAGCACACGAAGTGCCC
TATACGAGAATCCATACCATTAATATGATTCATTTACCATTTTTTTAGCACATGAAGTGCCCTAT
ATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACTCATAGTGCTTTTTCTGGAA
ATCCATACACTCAGTATGATTCTCTTACCATTTTAGCACATATAATGCCCTATCTGGAAATCCAT
ATATTCAATATGAGTTCTTATCATTTTAGCACACTCAGTGCTCCATATGGA
Found at i:37197 original size:117 final size:117
Alignment explanation
Indices: 37037--37325 Score: 377
Period size: 117 Copynumber: 2.5 Consensus size: 117
37027 GTGTTTTTTC
* *
37037 TGGAAATCCATACACTCAGTATGA-TTCTCTTACCATTTTAGCACATATAATGCCCTATCTGGAA
1 TGGAAATCCATACACTCAGTATGATTTCT-TTACCATTTTAGCACATATAGTGCCC-ATATGGAA
** * * * * *
37101 ATCCATATATTCAGTATTATTTTCTTATCATTTTA-GACACTCAGTGCTCCATA
64 ATAAATACACTCAGTATGATTTGCATATCATTTTAGGACACTCAGTGCTCCATA
* * *
37154 TGGAAATCCATACACTAAGTATGATTTCTTTATCATTTTAGCACACT-CAGTGCTCCATATGGAA
1 TGGAAATCCATACACTCAGTATGATTTCTTTACCATTTTAGCACA-TATAGTGC-CCATATGGAA
37218 ATAAATACACTCAGTATGATTTGCATATCATTTTAGGACACTCAGTGCTCCATA
64 ATAAATACACTCAGTATGATTTGCATATCATTTTAGGACACTCAGTGCTCCATA
* * * *
37272 TGGAAATCCATTCACTCAGTATGATTTCCTTACCATTATAGCGCATATAGTGCC
1 TGGAAATCCATACACTCAGTATGATTTCTTTACCATTTTAGCACATATAGTGCC
37326 ATTTGGTAAT
Statistics
Matches: 148, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
117 79 0.53
118 69 0.47
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.35
Consensus pattern (117 bp):
TGGAAATCCATACACTCAGTATGATTTCTTTACCATTTTAGCACATATAGTGCCCATATGGAAAT
AAATACACTCAGTATGATTTGCATATCATTTTAGGACACTCAGTGCTCCATA
Found at i:37324 original size:59 final size:59
Alignment explanation
Indices: 37037--37313 Score: 337
Period size: 59 Copynumber: 4.7 Consensus size: 59
37027 GTGTTTTTTC
* * * *
37037 TGGAAATCCATACACTCAGTATGA-TTCTCTTACCATTTTAGCACA-TATAATGC-CCTATC
1 TGGAAATCCATACACTCAGTATGATTTC-CTTATCATTTTAGCACACT-CAGTGCTCC-ATA
* * * *
37096 TGGAAATCCATATATTCAGTATTATTTTCTTATCATTTTAG-ACACTCAGTGCTCCATA
1 TGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
* *
37154 TGGAAATCCATACACTAAGTATGATTTCTTTATCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
** * * *
37213 TGGAAATAAATACACTCAGTATGATTTGCATATCATTTTAGGACACTCAGTGCTCCATA
1 TGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
* * *
37272 TGGAAATCCATTCACTCAGTATGATTTCCTTACCATTATAGC
1 TGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGC
37314 GCATATAGTG
Statistics
Matches: 185, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
58 44 0.24
59 139 0.75
60 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.36
Consensus pattern (59 bp):
TGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
Found at i:39092 original size:24 final size:25
Alignment explanation
Indices: 39065--39116 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
39055 AAGAAAAATC
* *
39065 AGAAAAG-AAAGTGAAGCACTCAAA
1 AGAAAAGAAAAATCAAGCACTCAAA
*
39089 AG-AAAGAAAAATCCAGCACTCAAA
1 AGAAAAGAAAAATCAAGCACTCAAA
39113 AGAA
1 AGAA
39117 TAAAAAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
23 4 0.17
24 18 0.78
25 1 0.04
ACGTcount: A:0.60, C:0.15, G:0.17, T:0.08
Consensus pattern (25 bp):
AGAAAAGAAAAATCAAGCACTCAAA
Found at i:44462 original size:19 final size:19
Alignment explanation
Indices: 44426--44462 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
44416 TGAAAATGAT
*
44426 TTGATTTTGAAAGCCAAAG
1 TTGATTTTGAAAACCAAAG
*
44445 TTGATTTTGAAAATCAAA
1 TTGATTTTGAAAACCAAA
44463 ATGAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.35
Consensus pattern (19 bp):
TTGATTTTGAAAACCAAAG
Found at i:48649 original size:44 final size:44
Alignment explanation
Indices: 48375--48654 Score: 407
Period size: 44 Copynumber: 6.4 Consensus size: 44
48365 GTATGAAAAT
* *
48375 GATGCCATAACTAAAATGTATAATGGTGCATTAAGGCATGAAAG
1 GATGCCATAACTGAAATGCATAATGGTGCATTAAGGCATGAAAG
*
48419 GATGCCATAACTAAAATGCATAATGGTGCATTAAGGCATGAAAG
1 GATGCCATAACTGAAATGCATAATGGTGCATTAAGGCATGAAAG
*
48463 GATGCCATAACTAAAATGCATAATGGTGCATTAAGGCATGAAAG
1 GATGCCATAACTGAAATGCATAATGGTGCATTAAGGCATGAAAG
* *
48507 GATGCCATAAATGAAATGCATAATGGTGCATTAAGTCATGAAAG
1 GATGCCATAACTGAAATGCATAATGGTGCATTAAGGCATGAAAG
* * * *
48551 GATGCCATAACTGAAATGGATAACGGTGTATTAATGCATGAAAG
1 GATGCCATAACTGAAATGCATAATGGTGCATTAAGGCATGAAAG
* * * ** *
48595 GATGCCATAAATGAAATGCATAACGGTGCAGTAAGATATGAAAA
1 GATGCCATAACTGAAATGCATAATGGTGCATTAAGGCATGAAAG
*
48639 GATGCCATAAATGAAA
1 GATGCCATAACTGAAA
48655 ATAATAAATA
Statistics
Matches: 218, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 218 1.00
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (44 bp):
GATGCCATAACTGAAATGCATAATGGTGCATTAAGGCATGAAAG
Found at i:50773 original size:83 final size:81
Alignment explanation
Indices: 50622--50836 Score: 313
Period size: 82 Copynumber: 2.6 Consensus size: 81
50612 TAGACCAAAG
* * * *
50622 TTGATTTGTTCATCTTTCTCGGGTAGTCAGATCAATTTTGGAAGACGGGTTTGCTCCACTCTTCT
1 TTGATTTGTTCCTCTTTTTTGGGTAGTCAGATCAATTTTGGAAGATGGGTTTGCTCCACTCTTCT
*
50687 TTCAGGGGAAACCAGAC
66 TTCA-GGGAAACAAGAC
* * * *
50704 TTGATTTGTTCCTTTTTTTTGGGTAGTCAGATTAATTTTTGGAAGATGGGTTTGTTCCACTCTTT
1 TTGATTTGTTCCTCTTTTTTGGGTAGTCAGATCAA-TTTTGGAAGATGGGTTTGCTCCACTCTTC
*
50769 TTTCAGGGAGACAAGAC
65 TTTCAGGGAAACAAGAC
*
50786 TTGATCTGTTCCTCTTTTTTGGGTAGTCAGATCAATTTTGGAAGATGGGTT
1 TTGATTTGTTCCTCTTTTTTGGGTAGTCAGATCAATTTTGGAAGATGGGTT
50837 GTTGAGTTAA
Statistics
Matches: 119, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
81 16 0.13
82 72 0.61
83 31 0.26
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (81 bp):
TTGATTTGTTCCTCTTTTTTGGGTAGTCAGATCAATTTTGGAAGATGGGTTTGCTCCACTCTTCT
TTCAGGGAAACAAGAC
Found at i:51637 original size:22 final size:20
Alignment explanation
Indices: 51611--51663 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
51601 AAACCATTCA
*
51611 GGGGGGAATCGGTAACCCCTT
1 GGGGGGAATCGAT-ACCCCTT
51632 GTGGGGGAATCGATACCCCTT
1 G-GGGGGAATCGATACCCCTT
51653 GGGAGGGAATC
1 GGG-GGGAATC
51664 AATTCCCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 2 0.07
21 16 0.55
22 11 0.38
ACGTcount: A:0.21, C:0.21, G:0.40, T:0.19
Consensus pattern (20 bp):
GGGGGGAATCGATACCCCTT
Found at i:58111 original size:85 final size:83
Alignment explanation
Indices: 58012--58187 Score: 214
Period size: 85 Copynumber: 2.1 Consensus size: 83
58002 ATTAAATCAC
* * * *
58012 GACACAAGAATGTGTGTCATCTT-TTTTAATGACATGTGCTTCAATGACACGTAATGTAAG-TCA
1 GACACAAGAATGTGTGTCATCTTCATTT-ATGACAGGGGCTTCAATGACACGCAATG--AGCTCA
* *
58075 TACATGCGTGTCATAAATTTAT
63 TAAATG-GCGTCATAAATTTAT
58097 GACACATA-AATGTGTGTCATCTTCATTTATGACAGGGGCTTCAATGACACGCAATGAGCTTCAT
1 GACACA-AGAATGTGTGTCATCTTCATTTATGACAGGGGCTTCAATGACACGCAATGAGC-TCAT
*
58161 AAATGGCGTCATAGATTTAT
64 AAATGGCGTCATAAATTTAT
58181 GACACAA
1 GACACAA
58188 TTGCGCATCA
Statistics
Matches: 80, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
83 3 0.04
84 19 0.24
85 54 0.68
86 4 0.05
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (83 bp):
GACACAAGAATGTGTGTCATCTTCATTTATGACAGGGGCTTCAATGACACGCAATGAGCTCATAA
ATGGCGTCATAAATTTAT
Found at i:64802 original size:39 final size:39
Alignment explanation
Indices: 64748--64833 Score: 154
Period size: 39 Copynumber: 2.2 Consensus size: 39
64738 ACAAGTACAT
64748 GATTAACACTTAACCACCAATTGTAAAGTTTATCAAACA
1 GATTAACACTTAACCACCAATTGTAAAGTTTATCAAACA
*
64787 GATTAACACTTAACCACCAATTGTAAAGTTTATTAAACA
1 GATTAACACTTAACCACCAATTGTAAAGTTTATCAAACA
*
64826 AATTAACA
1 GATTAACA
64834 TATTACCCGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.29
Consensus pattern (39 bp):
GATTAACACTTAACCACCAATTGTAAAGTTTATCAAACA
Found at i:75009 original size:32 final size:32
Alignment explanation
Indices: 74965--75039 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
74955 CTAGTTAGAG
*
74965 TGCATTTAGATAATGCATAATATGTTCAGGTT
1 TGCATTTAGATAATGCATAATACGTTCAGGTT
* * *
74997 TGTATTTAGATAATGCATAGTACGTTCATGTT
1 TGCATTTAGATAATGCATAATACGTTCAGGTT
*
75029 TGCATTCAGAT
1 TGCATTTAGAT
75040 GTTGCACAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (32 bp):
TGCATTTAGATAATGCATAATACGTTCAGGTT
Found at i:78940 original size:81 final size:81
Alignment explanation
Indices: 78786--79081 Score: 353
Period size: 81 Copynumber: 3.6 Consensus size: 81
78776 ACTATTCCAA
* * * *
78786 GAGTAAAAGATTAAATGGCCTAGATCTGCATTTGGAAGAATGGTGTCAATTATGCTAGTTAGATG
1 GAGTAAAAGAAT-AATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATG
* *
78851 AACAGTTAAATACCGGT
65 AACTGTTAAATACCGTT
* * * * * *
78868 GAGAAAAAGAATAATGGCCTAGCTGTGCATTTGGCAGAAAGATGTTAATTATGCCAGTTAGATTA
1 GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATGA
78933 ACTGTTAAATACCGTT
66 ACTGTTAAATACCGTT
* * * * *
78949 GATTAAAAGATTAATGGCCTAGCTCTGCATTTGGAAGAAAGGTGTCAATTACGCCAGTTAGATGA
1 GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATGA
79014 A-TGGTTAAATACCGTT
66 ACT-GTTAAATACCGTT
* * * * *
79030 AAGTAAAAGAATAATGTCCTAGATGTGCATTT-GACAAAAAAATGTCAATTAT
1 GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGA-AGAAAGATGTCAATTAT
79082 AACTTAGATG
Statistics
Matches: 181, Mismatches: 31, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
80 3 0.02
81 168 0.93
82 10 0.06
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (81 bp):
GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATGA
ACTGTTAAATACCGTT
Found at i:79460 original size:22 final size:22
Alignment explanation
Indices: 79435--79504 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
79425 CATTATCGGC
79435 ATGAAAGGATGCCATAATTAAA
1 ATGAAAGGATGCCATAATTAAA
* * * **
79457 ATGAATATGGGTG-CATTATCAGC
1 ATGAA-A-GGATGCCATAATTAAA
*
79480 ATGAAAGGATGCCATAATTGAA
1 ATGAAAGGATGCCATAATTAAA
79502 ATG
1 ATG
79505 CATATGGGTG
Statistics
Matches: 34, Mismatches: 11, Indels: 6
0.67 0.22 0.12
Matches are distributed among these distances:
21 4 0.12
22 14 0.41
23 12 0.35
24 4 0.12
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (22 bp):
ATGAAAGGATGCCATAATTAAA
Found at i:79510 original size:45 final size:44
Alignment explanation
Indices: 79163--79586 Score: 499
Period size: 45 Copynumber: 9.4 Consensus size: 44
79153 TACATAAAAG
* * *** * *
79163 GCATGAAAGGATGCCATAAATGAAATGTATAACAGTGTATAAAAT-
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCAT--TATC
* * *
79208 GCATTAAAGGATGTCATAATTGAAATGCATATGAGTGCATTATC
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
* * *
79252 GGCATGAAAGAATGCCATAATTAAAATACATATGGGTGCATTATC
1 -GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
*
79297 AGCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATC
1 -GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
* * * * * *
79342 GACCTAAAAGGATGGCATAATTAAAATACATATGGGTGGATTATC
1 G-CATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
*
79387 GGCATGAAAGGATGCAATAATTGAAATGCATATGGGTGCATTATC
1 -GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
* *
79432 GGCATGAAAGGATGCCATAATTAAAATGAATATGGGTGCATTATC
1 -GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
79477 AGCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
1 -GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
* * * *
79522 GACATGAAAAGATGTCACAATTGAAATGTATATGGGTGCATTATC
1 G-CATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
*
79567 GACATGAAAGGATGACATAA
1 G-CATGAAAGGATGCCATAA
79587 ATAAAAATAC
Statistics
Matches: 332, Mismatches: 42, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 327 0.98
46 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.27
Consensus pattern (44 bp):
GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC
Found at i:79618 original size:90 final size:89
Alignment explanation
Indices: 79208--79644 Score: 440
Period size: 90 Copynumber: 4.8 Consensus size: 89
79198 TGTATAAAAT
* * * * **
79208 GCATTAAAGGATGTCATAATTGAAATGCATATGAGTGCATTATCGGCATG-AAAGAATGCCATAA
1 GCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTAT-ATCATGAAAAG-ATGCCATAA
79272 TTAAAAT-ACATATGGGTGCATTATCA
64 TTAAAATGA-ATATGGGTGCATTATCA
* *
79298 GCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATCGA-CCT-AAAAGGATGGCATA
1 GCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTAT--ATCATGAAAA-GATGCCATA
* *
79361 ATTAAAAT-ACATATGGGTGGATTATCG
63 ATTAAAATGA-ATATGGGTGCATTATCA
* * ** *
79388 GCATGAAAGGATGCAATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAAT
1 GCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTAT-ATCATGAAAAGATGCCATAAT
79453 TAAAATGAATATGGGTGCATTATCA
65 TAAAATGAATATGGGTGCATTATCA
* * *
79478 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGA-CATGAAAAGATGTCACAA
1 GCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTAT--ATCATGAAAAGATGCCATAA
* *
79542 TTGAAATGTATATGGGTGCATTATC-
64 TTAAAATGAATATGGGTGCATTATCA
* ** * ** *
79567 GACATGAAAGGATGACATAAATAAAAATACATAAT-GGTGCATTAAATCATGAATGGATGCTATC
1 G-CATGAAAGGATGCCAT-AATTGAAATACAT-ATGGGTGCATTATATCATGAAAAGATGCCAT-
*
79631 AATGAAAATGAATA
62 AATTAAAATGAATA
79645 ATGAGTAAAG
Statistics
Matches: 295, Mismatches: 40, Indels: 23
0.82 0.11 0.06
Matches are distributed among these distances:
89 2 0.01
90 256 0.87
91 35 0.12
92 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (89 bp):
GCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATATCATGAAAAGATGCCATAATT
AAAATGAATATGGGTGCATTATCA
Found at i:83803 original size:81 final size:81
Alignment explanation
Indices: 83679--84063 Score: 508
Period size: 81 Copynumber: 4.8 Consensus size: 81
83669 CTCGAAAATA
** * * * ** *
83679 AAAAGATTAAATAACCTAGCTGTGTATTTGGCAGAAATTTGTCAATTATGCCAATTAGATGAACG
1 AAAAGATT-AATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAACG
*
83744 GTTAAATACCGTCGAGT
65 GTTAAATACCGTTGAGT
* *
83761 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAATGTGTCAATTATGCCAGTTAGATGAACGA
1 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAACGG
83826 TTAAATACCGTTGAGT
66 TTAAATACCGTTGAGT
* * * *
83842 AAAAGATTAATGGCCTAGCTGTGTATTTGG-AAAAAAGTGTTAATTATGTCAGTTAGATGAACGG
1 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAACGG
*
83906 TTAAATACGGTTGAGT
66 TTAAATACCGTTGAGT
* *
83922 AAAAGATTAA-GGCCTA-TATGTGCATTTGG-AAAAAAGGTGTCAATTATTCCTGTTAGATGAAC
1 AAAAGATTAATGGCCTAGT-TGTGCATTTGGCAAAAAA-GTGTCAATTATGCCAGTTAGATGAAC
*
83984 GGTTAAATACAGTTGAGT
64 GGTTAAATACCGTTGAGT
* * * *
84002 AAAAGATTAATGTCCTAGTTGTTCATTTGACAAAAAAGTGTCAATTATGCAAGTTAGATGAA
1 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAA
84064 AGGCTAAAGG
Statistics
Matches: 269, Mismatches: 29, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
79 22 0.08
80 104 0.39
81 128 0.48
82 15 0.06
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (81 bp):
AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAACGG
TTAAATACCGTTGAGT
Found at i:84230 original size:45 final size:45
Alignment explanation
Indices: 84181--84549 Score: 460
Period size: 45 Copynumber: 8.2 Consensus size: 45
84171 ATAAAAGTCC
* *
84181 TGAAAGGATGACATAATTGAAATGCATATGGGTGCACTATCGGCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * *
84226 TGAAAGGATGCTATAATTGAAATGTATAAGGGTGCATTATCGGCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * *
84271 TGAAAGGATACCATAATTGAAATGCATACGGGTGCATTATTAGG-A
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTA-TCGGCA
* * *
84316 TGAAAAGAT-TCATAATTGAAATGCATATGGGTGCATTATTGGCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* *
84360 TGAAAGGATGCCATAATTGAAATGAATAT-GGTGCATTATCGACA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * *
84404 TGAAAGGATGCCATAACTGAAATGCATATGGGTGGATTATCGACA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
84449 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC-GCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * ** * **
84493 TGAAAGTATGTCATAAATAAAAACGCATAAT-GGTGCATTATAAGCA
1 TGAAAGGATGCCAT-AATTGAAATGCAT-ATGGGTGCATTATCGGCA
*
84539 TGAATGGATGC
1 TGAAAGGATGC
84550 TCTCAATGAA
Statistics
Matches: 283, Mismatches: 34, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
43 3 0.01
44 90 0.32
45 174 0.61
46 16 0.06
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.27
Consensus pattern (45 bp):
TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
Found at i:84378 original size:22 final size:22
Alignment explanation
Indices: 84353--84468 Score: 76
Period size: 22 Copynumber: 5.2 Consensus size: 22
84343 TGGGTGCATT
*
84353 ATTGGCATGAAAGGATGCCATA
1 ATTGACATGAAAGGATGCCATA
* *
84375 ATTGAAATGAATATGG-TG-CATT
1 ATTGACATGAA-A-GGATGCCATA
*
84397 ATCGACATGAAAGGATGCCATA
1 ATTGACATGAAAGGATGCCATA
* * * * * *
84419 ACTGAAATGCATATGGGTG-GATT
1 ATTGACATG-A-AAGGATGCCATA
*
84442 ATCGACATGAAAGGATGCCATA
1 ATTGACATGAAAGGATGCCATA
84464 ATTGA
1 ATTGA
84469 AATGCATATG
Statistics
Matches: 66, Mismatches: 21, Indels: 14
0.65 0.21 0.14
Matches are distributed among these distances:
20 2 0.03
21 8 0.12
22 37 0.56
23 12 0.18
24 7 0.11
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (22 bp):
ATTGACATGAAAGGATGCCATA
Found at i:84508 original size:89 final size:89
Alignment explanation
Indices: 84181--84549 Score: 458
Period size: 89 Copynumber: 4.1 Consensus size: 89
84171 ATAAAAGTCC
* *
84181 TGAAAGGATGACATAATTGAAATGCATATGGGTGCACTATCGGCATGAAAGGATG-CTATAATTG
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC-GCATGAAAGGATGTC-ATAATTG
* *
84245 AAATGTATAAGGGTGCATTATCGGCA
64 AAATGCATATGGGTGCATTATCGGCA
* * * * *
84271 TGAAAGGATACCATAATTGAAATGCATACGGGTGCATTATTAGGATGAAAAGAT-TCATAATTGA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTA-TCGCATGAAAGGATGTCATAATTGA
*
84335 AATGCATATGGGTGCATTATTGGCA
65 AATGCATATGGGTGCATTATCGGCA
* * *
84360 TGAAAGGATGCCATAATTGAAATGAATAT-GGTGCATTATCGACATGAAAGGATGCCATAACTGA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCG-CATGAAAGGATGTCATAATTGA
* *
84424 AATGCATATGGGTGGATTATCGACA
65 AATGCATATGGGTGCATTATCGGCA
* **
84449 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGCATGAAAGTATGTCATAAATAAA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGCATGAAAGGATGTCAT-AATTGA
* **
84514 AACGCATAAT-GGTGCATTATAAGCA
65 AATGCAT-ATGGGTGCATTATCGGCA
*
84539 TGAATGGATGC
1 TGAAAGGATGC
84550 TCTCAATGAA
Statistics
Matches: 239, Mismatches: 33, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
87 2 0.01
88 18 0.08
89 128 0.54
90 88 0.37
91 3 0.01
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.27
Consensus pattern (89 bp):
TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGCATGAAAGGATGTCATAATTGAA
ATGCATATGGGTGCATTATCGGCA
Done.