Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006011.1 Hibiscus syriacus cultivar Beakdansim tig00014179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58414

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4963--5020
2
29.0
2
96
0
107
50
48
0
1
1.11
9555--9612
6
9.7
6
78
0
62
34
20
1
43
1.62
9555--9614
18
3.4
17
82
11
75
35
21
1
41
1.63
9737--9830
23
4.1
23
78
0
89
32
25
22
19
1.97
9742--9838
46
2.1
46
84
0
122
32
22
24
19
1.97
9771--9838
23
3.0
23
84
0
82
30
25
26
17
1.97
12189--12217
15
1.9
15
100
0
58
34
0
0
65
0.93
13185--13215
14
2.3
13
94
5
53
32
0
0
67
0.91
17409--17497
3
30.0
3
87
6
128
37
0
0
62
0.95
17872--17921
23
2.2
23
100
0
100
30
28
22
20
1.98
18861--18897
16
2.4
16
86
13
51
29
5
5
59
1.42
18903--18989
12
7.4
11
74
22
63
25
1
4
68
1.15
18912--18989
25
3.4
23
77
19
67
25
1
3
69
1.13
19159--19202
23
1.9
23
86
9
63
52
0
0
47
1.00
21261--21301
7
6.0
7
86
13
59
14
17
12
56
1.68
24441--24476
8
4.2
9
89
10
58
80
0
19
0
0.71
24431--24476
17
2.8
17
86
3
67
80
0
17
2
0.81
29222--29275
22
2.5
22
96
0
99
35
14
14
35
1.88
34133--34183
10
5.4
10
81
11
63
0
7
13
78
0.96
34133--34183
19
2.7
18
87
6
57
0
7
13
78
0.96
34140--34183
19
2.4
18
92
3
70
0
6
11
81
0.86
34510--34554
11
4.1
11
82
5
56
71
4
11
13
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34510--34551
22
1.9
22
90
9
68
69
4
11
14
1.34
36862--36898
17
2.2
17
90
0
56
5
16
0
78
0.93
36888--36940
24
2.2
24
86
0
70
11
16
15
56
1.67
48078--48175
46
2.1
47
83
5
119
27
19
22
30
1.98
48743--48975
127
1.8
123
87
7
333
25
18
21
34
1.96
57967--58003
15
2.5
15
95
0
65
29
5
10
54
1.57
58043--58414
54
7.0
54
85
4
443
30
19
17
32
1.95
58043--58414
107
3.5
106
82
4
412
30
19
17
32
1.95
58181--58263
27
3.1
27
61
11
62
28
15
18
37
1.91

Tables:   1

The End!