genome.fa.s6012.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006012.1 Hibiscus syriacus cultivar Beakdansim tig00014180_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85554

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3927--4405	81	6.0	80	86	4	635	33	21	10	34	1.88
3927--4405	161	3.0	161	85	3	639	33	21	10	34	1.88
15633--15721	44	2.0	44	100	0	178	42	6	4	46	1.50
17873--17929	23	2.5	23	88	0	96	35	7	19	38	1.79
18109--18159	23	2.2	23	78	0	57	43	9	19	27	1.82
18273--19003	199	3.7	199	89	1	1065	30	14	15	39	1.87
23013--23071	18	3.5	17	76	21	61	32	3	40	23	1.71
23024--23069	15	2.9	15	81	15	56	26	2	41	30	1.68
23370--24528	200	5.8	200	87	2	1576	33	14	14	38	1.86
24243--24281	20	2.0	20	89	0	60	30	15	10	43	1.80
24441--24715	128	2.1	128	82	6	317	32	13	10	44	1.78
27388--27437	25	2.0	25	100	0	100	8	20	16	56	1.65
30322--30425	37	2.8	37	86	1	147	39	15	15	29	1.88
31267--31304	4	9.2	4	94	5	67	23	2	0	73	0.95
31309--31359	26	2.0	24	85	7	66	15	7	0	76	1.00
39987--40026	3	13.7	3	84	5	55	0	32	0	67	0.91
47606--47687	35	2.4	34	84	7	105	39	8	23	29	1.84
47625--47698	35	2.1	35	89	0	112	40	10	18	29	1.85
60915--60968	26	2.1	26	100	0	108	22	14	18	44	1.86
69113--69150	18	2.2	17	86	9	51	76	0	10	13	1.02
78444--78483	16	2.5	16	100	0	80	0	55	0	45	0.99
78814--79247	195	2.2	194	86	1	591	41	12	13	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79912--79949	20	1.9	20	94	0	67	36	18	26	18	1.94
79911--79959	20	2.5	20	82	0	62	36	20	24	18	1.94

Tables:   1

The End!