Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006016.1 Hibiscus syriacus cultivar Beakdansim tig00014192_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63152
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:2030 original size:14 final size:14
Alignment explanation
Indices: 1976--2027 Score: 79
Period size: 14 Copynumber: 3.7 Consensus size: 14
1966 GTTAATAGAA
1976 TGAGTCAACTCGCC
1 TGAGTCAACTCGCC
1990 TGAGTCAACTCGCC
1 TGAGTCAACTCGCC
*
2004 TGAGTCAACTTGTCC
1 TGAGTCAACTCG-CC
2019 -GAGTCAACT
1 TGAGTCAACT
2028 TGTTTGATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
14 34 0.94
15 2 0.06
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (14 bp):
TGAGTCAACTCGCC
Found at i:6816 original size:101 final size:100
Alignment explanation
Indices: 6638--6839 Score: 296
Period size: 101 Copynumber: 2.0 Consensus size: 100
6628 ACTTCAACTC
* * **
6638 TTTTTTTAGCATACTTTAAAGGGAGTCATCTCATCACACTATGATCCCACACTCTAAGTGAAAGG
1 TTTTTTAAGCATACTTTAAAGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
* *
6703 GAGCATAACTTCCACCCTCGAGCTAGTCAAGTAGAG
66 GAACATAACTTCCACCC-CAAGCTAGTCAAGTAGAG
* * *
6739 TTTTTTAAGCGTACTTTAAGGGGAGTCAGCTCATCACACTACCATCCCGCACTCTAAGTGAAAGG
1 TTTTTTAAGCATACTTTAAAGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
* *
6804 GAACATACCTTCCACCCCAAGCTAGTCAGGTAGAG
66 GAACATAACTTCCACCCCAAGCTAGTCAAGTAGAG
6839 T
1 T
6840 CATACCGTGA
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 17 0.19
101 73 0.81
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
TTTTTTAAGCATACTTTAAAGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
GAACATAACTTCCACCCCAAGCTAGTCAAGTAGAG
Found at i:11878 original size:102 final size:102
Alignment explanation
Indices: 11702--11902 Score: 339
Period size: 102 Copynumber: 2.0 Consensus size: 102
11692 ACATCAACTC
* * *
11702 TTTTTTTAGCATACTTTAAAGGGAGTCATCTCATCACACTACGATCCCACACTCTAAGTGAAAGG
1 TTTTTTAAGCATACTTTAAAGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
*
11767 GAGAATACCTTCCACTCCCGAGCTAGTCAAGTAGGTG
66 GAGAATACCTTCCACCCCCGAGCTAGTCAAGTAGGTG
*
11804 TTTTTTAAGCATACTTTAAGGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
1 TTTTTTAAGCATACTTTAAAGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
* *
11869 GAGCATACCTTCCACCCCCGAGCTAGTCAGGTAG
66 GAGAATACCTTCCACCCCCGAGCTAGTCAAGTAG
11903 AGTCATCCCG
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 92 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (102 bp):
TTTTTTAAGCATACTTTAAAGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
GAGAATACCTTCCACCCCCGAGCTAGTCAAGTAGGTG
Found at i:20134 original size:22 final size:21
Alignment explanation
Indices: 20092--20134 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
20082 ATATTTTAAG
* *
20092 GGGACCGATCCTTTGGTCAAA
1 GGGACCGATCCTTTAGCCAAA
*
20113 GGGATCGATCCTTTAAGCCAAA
1 GGGACCGATCCTTT-AGCCAAA
20135 AATCCTTGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (21 bp):
GGGACCGATCCTTTAGCCAAA
Found at i:22344 original size:5 final size:5
Alignment explanation
Indices: 22334--22358 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
22324 GTGTGGGCAT
22334 ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA
22359 TAGTATGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:22484 original size:23 final size:23
Alignment explanation
Indices: 22454--22497 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
22444 TGTGATAGTA
*
22454 CATATTAAGTAATAGTTGCATTG
1 CATATTAAATAATAGTTGCATTG
22477 CATATTAAATAATAGTTGCAT
1 CATATTAAATAATAGTTGCAT
22498 ATTATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (23 bp):
CATATTAAATAATAGTTGCATTG
Found at i:22497 original size:18 final size:18
Alignment explanation
Indices: 22473--22520 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
22463 TAATAGTTGC
22473 ATTGCATATTAAATAATAG
1 ATTGCATATTAAA-AATAG
*
22492 -TTGCATATTATAAATAG
1 ATTGCATATTAAAAATAG
22509 TATTGCATATTA
1 -ATTGCATATTA
22521 TATTCGATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 5 0.19
18 11 0.42
19 10 0.38
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (18 bp):
ATTGCATATTAAAAATAG
Found at i:22516 original size:19 final size:19
Alignment explanation
Indices: 22473--22522 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
22463 TAATAGTTGC
22473 ATTGCATA-T-TAAATAAT
1 ATTGCATATTATAAATAAT
*
22490 AGTTGCATATTATAAATAGT
1 A-TTGCATATTATAAATAAT
22510 ATTGCATATTATA
1 ATTGCATATTATA
22523 TTCGATATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 1 0.03
18 7 0.24
19 13 0.45
20 8 0.28
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (19 bp):
ATTGCATATTATAAATAAT
Found at i:30187 original size:5 final size:5
Alignment explanation
Indices: 30164--30316 Score: 210
Period size: 5 Copynumber: 31.6 Consensus size: 5
30154 AGAAGAAATT
* * * *
30164 TAATA -AATA TTATA T-ATA TAATA TTAT- TTATA -AATA T-AT- TCAACA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA T-AATA
*
30209 TAATA TAATA TAATA TAATA TAATA TAAAA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
30259 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
30309 TAATA TAA
1 TAATA TAA
30317 AACGTGCATA
Statistics
Matches: 134, Mismatches: 7, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
3 1 0.01
4 17 0.13
5 115 0.86
6 1 0.01
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:30438 original size:2 final size:2
Alignment explanation
Indices: 30433--30501 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
30423 CTAAGTCAAA
30433 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30475 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
30502 AACATGCGTA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:30588 original size:10 final size:10
Alignment explanation
Indices: 30435--30598 Score: 52
Period size: 12 Copynumber: 14.7 Consensus size: 10
30425 AAGTCAAAAT
30435 ATATATATATA
1 ATATATA-ATA
30446 TATATATATATA
1 -ATATATA-ATA
30458 TATATATATATA
1 -ATATATA-ATA
30470 TATATATATATA
1 -ATATATA-ATA
30482 TATATATATATA
1 -ATATATA-ATA
30494 TATATATAA-A
1 -ATATATAATA
*
30504 CATGCGTATAACTA
1 -AT--ATATAA-TA
30518 A-ATATAATAA
1 ATATATAAT-A
*
30528 ATAATAGTTAATCC
1 AT-ATA--TAAT-A
30542 ATATAATTAATA
1 ATAT-A-TAATA
*
30554 ATAATATAA-C
1 AT-ATATAATA
30564 ATATATAA-A
1 ATATATAATA
30573 AT-TATAATA
1 ATATATAATA
30582 ATATATACAT-
1 ATATATA-ATA
30592 ATATATA
1 ATATATA
30599 CCCAAACGAA
Statistics
Matches: 130, Mismatches: 8, Indels: 30
0.77 0.05 0.18
Matches are distributed among these distances:
8 5 0.04
9 12 0.09
10 23 0.18
11 6 0.05
12 66 0.51
13 10 0.08
14 8 0.06
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (10 bp):
ATATATAATA
Found at i:30598 original size:28 final size:26
Alignment explanation
Indices: 30546--30596 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30536 TAATCCATAT
30546 AATTAATAATAATATAACATATATAA
1 AATTAATAATAATATAACATATATAA
30572 AATT-ATAATAATATATACATATATA
1 AATTAATAATAATATA-ACATATATA
30597 TACCCAAACG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (26 bp):
AATTAATAATAATATAACATATATAA
Found at i:32321 original size:11 final size:11
Alignment explanation
Indices: 32307--32342 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
32297 TCTTTTTCCC
32307 TTTTTTTC-TT
1 TTTTTTTCTTT
*
32317 TTTTTTTCTTA
1 TTTTTTTCTTT
32328 TTTTTTTCTTT
1 TTTTTTTCTTT
32339 TTTT
1 TTTT
32343 CTTAAGGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.03, C:0.08, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:32323 original size:21 final size:22
Alignment explanation
Indices: 32294--32342 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
32284 TTTTACTCTA
* *
32294 TTTTCTTTTTC-CCTTTTTTTC
1 TTTTTTTTTTCTCATTTTTTTC
*
32315 -TTTTTTTTTCTTATTTTTTTC
1 TTTTTTTTTTCTCATTTTTTTC
32336 TTTTTTT
1 TTTTTTT
32343 CTTAAGGCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 9 0.39
21 8 0.35
22 6 0.26
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTTTTTTCTCATTTTTTTC
Found at i:32325 original size:10 final size:10
Alignment explanation
Indices: 32307--32342 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
32297 TCTTTTTCCC
32307 TTTTTTTCTT
1 TTTTTTTCTT
32317 TTTTTTTCTT
1 TTTTTTTCTT
32327 ATTTTTTTCTT
1 -TTTTTTTCTT
32338 TTTTT
1 TTTTT
32343 CTTAAGGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.03, C:0.08, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:32331 original size:19 final size:19
Alignment explanation
Indices: 32294--32346 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
32284 TTTTACTCTA
**
32294 TTTTCTTTTTCCCTT-TTT
1 TTTTCTTTTTTTCTTATTT
32312 TTCTT-TTTTTTTCTTATTT
1 TT-TTCTTTTTTTCTTATTT
32331 TTTTCTTTTTTTCTTA
1 TTTTCTTTTTTTCTTA
32347 AGGCAAAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 12 0.40
19 18 0.60
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTCTTTTTTTCTTATTT
Found at i:52267 original size:34 final size:34
Alignment explanation
Indices: 52224--52291 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
52214 TTCTTTTCTA
52224 TTATTTACAAATATAGGCGGCCACCATGGCCGCT
1 TTATTTACAAATATAGGCGGCCACCATGGCCGCT
52258 TTATTTACAAATATAGGCGGCCACCATGGCCGCT
1 TTATTTACAAATATAGGCGGCCACCATGGCCGCT
52292 GCCGCTCAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (34 bp):
TTATTTACAAATATAGGCGGCCACCATGGCCGCT
Found at i:53201 original size:2 final size:2
Alignment explanation
Indices: 53190--53271 Score: 70
Period size: 2 Copynumber: 43.5 Consensus size: 2
53180 CATTTAATAA
*
53190 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT TT A- AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
53229 AT -T TT AT AA AT AT ACT CA- AT AT A- AT AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT A-T -AT AT AT AT AT AT AT AT AT AT AT AT AT
53269 AT A
1 AT A
53272 ATAGAAAACG
Statistics
Matches: 66, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
1 7 0.11
2 57 0.86
3 1 0.02
4 1 0.02
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:56273 original size:13 final size:12
Alignment explanation
Indices: 56242--56282 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
56232 GGTTTTCCCC
*
56242 TAAAAAAATAAA
1 TAAAATAATAAA
56254 TAAAATAATAAA
1 TAAAATAATAAA
56266 TGAAAAT-A-AAA
1 T-AAAATAATAAA
56277 TAAAAT
1 TAAAAT
56283 TTCTTGTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 5 0.19
11 4 0.15
12 13 0.48
13 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (12 bp):
TAAAATAATAAA
Found at i:58355 original size:29 final size:29
Alignment explanation
Indices: 58296--58357 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
58286 TAAAGTGTAG
* *
58296 TAAAATAAAATTTAGTAGTTAATATGTAA
1 TAAAATAAAATTTAGTAGTTAAAATGAAA
58325 TAAAAT-AAATGTTAGTAGTTAGAAAT-AAA
1 TAAAATAAAAT-TTAGTAGTTA-AAATGAAA
58354 TAAA
1 TAAA
58358 GTACATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 4 0.14
29 22 0.76
30 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (29 bp):
TAAAATAAAATTTAGTAGTTAAAATGAAA
Found at i:59623 original size:92 final size:90
Alignment explanation
Indices: 59434--59689 Score: 329
Period size: 92 Copynumber: 2.8 Consensus size: 90
59424 GGAATTGAAC
* * * *
59434 CAAGG-TGAACAAGTTCTTCTCATTATGAACTTATTCTCCTCATCAGACGAGTTCTTCCCATTAT
1 CAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTCGTTAGATGAGTTCTTCCCATTAT
* *
59498 GAACTCTCTACTAGAAATGTTGATG
66 GAACTCTCCACTAGAAATATTGATG
* * *
59523 CAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTCCCTCGTTTGGATGAGTTCTTCGCATT
1 CAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCT-CCTCG-TTAGATGAGTTCTTCCCATT
*
59588 ATGAACTCTCCACTGGAAATATTGA-G
64 ATGAACTCTCCACTAGAAATATTGATG
* **
59614 CCAATGTTGAACAAGTTCTTCTCATTATGAACTTTCTTCTCCTCGTTAGATGAGTT-TTTTCATT
1 -CAAGGTTGAACAAGTTCTTCTCATTATGAAC-TTCTTCTCCTCGTTAGATGAGTTCTTCCCATT
*
59678 ATGAACACTCCA
64 ATGAACTCTCCA
59690 TGTTAATCCC
Statistics
Matches: 146, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
89 5 0.03
90 47 0.32
91 15 0.10
92 72 0.49
93 7 0.05
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.37
Consensus pattern (90 bp):
CAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTCGTTAGATGAGTTCTTCCCATTAT
GAACTCTCCACTAGAAATATTGATG
Found at i:60261 original size:37 final size:34
Alignment explanation
Indices: 60213--60280 Score: 100
Period size: 37 Copynumber: 1.9 Consensus size: 34
60203 CTCACGCGAC
*
60213 ATCTCAGAAAAATGGTCCTAAGAAGGACTAAAACA
1 ATCTCAGAAAAATGATCCTAAGAAGGA-TAAAACA
60248 ATCTCTAGAAAAAATGATCCTAAGAAGGATAAA
1 ATCTC-AG-AAAAATGATCCTAAGAAGGATAAA
60281 TAGTTTTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
35 5 0.17
36 6 0.20
37 19 0.63
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (34 bp):
ATCTCAGAAAAATGATCCTAAGAAGGATAAAACA
Found at i:61056 original size:41 final size:42
Alignment explanation
Indices: 60993--61099 Score: 128
Period size: 41 Copynumber: 2.6 Consensus size: 42
60983 GCCTGAGGGT
* ** * *
60993 CTTATGGATGGCTTGAAGGACTTA-TCATCTTACTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTTACGCATCATACTCGAAAGA
* * *
61034 CTTATAGATGGCCCGAAAGACTTACGCATCATGCTCGAGAGA
1 CTTATAGATGGCCCGAAGGACTTACGCATCATACTCGAAAGA
61076 CTTATAGATGG-CCGAAGGACTTAC
1 CTTATAGATGGCCCGAAGGACTTAC
61100 TCGTCAAGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 32 0.57
42 24 0.43
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (42 bp):
CTTATAGATGGCCCGAAGGACTTACGCATCATACTCGAAAGA
Found at i:61296 original size:53 final size:54
Alignment explanation
Indices: 61147--61299 Score: 163
Period size: 53 Copynumber: 2.8 Consensus size: 54
61137 GTTGTCAATG
* *
61147 AACCCCTAAAAATTAGGCTTACCTTCCTTTT-AAAATTCATTGAAAATCATCAAGA
1 AACCCCT-AAAATTAGGCTTAGCTT-CTTTTAAAAATTCTTTGAAAATCATCAAGA
* * * *
61202 AACCCCTAAAAATCAGGCTTAG-TT-TCTAAAAAACTCATTTGAAAA-CATCAAGA
1 AACCCCT-AAAATTAGGCTTAGCTTCTTTTAAAAATTC-TTTGAAAATCATCAAGA
*
61255 AACCCCT-GAATTAGGCTTAGCTTCTTTTAAAAATTGCTTTGAAAA
1 AACCCCTAAAATTAGGCTTAGCTTCTTTTAAAAATT-CTTTGAAAA
61300 ATATCATGTT
Statistics
Matches: 82, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
51 11 0.13
52 4 0.05
53 37 0.45
54 10 0.12
55 20 0.24
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
AACCCCTAAAATTAGGCTTAGCTTCTTTTAAAAATTCTTTGAAAATCATCAAGA
Done.