genome.fa.s6018.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006018.1 Hibiscus syriacus cultivar Beakdansim tig00014197_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125683

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15689--15893	109	1.9	109	82	2	259	48	15	15	20	1.80
16647--16729	23	3.6	23	77	9	89	4	8	40	45	1.56
16758--16799	3	13.7	3	85	5	57	66	0	7	26	1.17
16758--16799	22	1.9	22	90	0	66	66	0	7	26	1.17
16761--16797	19	1.9	19	88	0	56	64	0	8	27	1.21
17929--18130	95	2.1	95	80	5	212	37	10	25	26	1.88
18529--18785	81	3.2	81	87	2	363	34	10	22	32	1.88
24883--25070	95	2.0	95	86	2	261	38	14	23	22	1.92
25476--25733	81	3.2	80	84	2	318	36	11	21	31	1.89
29427--29452	2	13.0	2	100	0	52	50	0	0	50	1.00
29995--30320	83	3.9	83	78	5	291	30	15	17	35	1.92
30182--30335	42	3.7	41	72	16	136	33	16	18	31	1.93
36363--36413	19	2.6	20	90	3	77	47	5	11	35	1.65
38221--38785	285	2.0	284	95	0	1013	32	20	12	35	1.90
39959--40009	27	1.9	26	84	11	68	1	9	3	84	0.83
40759--40809	19	2.6	20	84	9	70	45	5	11	37	1.65
41266--41310	20	2.2	20	100	0	90	26	26	17	28	1.98
43477--43547	30	2.4	30	95	0	124	16	32	11	39	1.84
48413--48458	21	2.2	21	96	0	83	19	4	23	52	1.64
48422--48467	21	2.2	21	88	0	65	23	6	19	50	1.71
49476--49526	21	2.5	20	81	6	57	50	29	0	19	1.48
49559--49628	34	2.1	34	97	0	131	50	0	8	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52179--52214	16	2.2	16	90	0	54	38	25	2	33	1.70
52990--53037	5	9.8	5	81	4	62	20	4	0	75	0.97
52964--53032	23	3.0	23	79	10	68	17	7	2	72	1.20
52957--53037	33	2.4	34	83	2	92	16	6	2	75	1.11
56616--56664	19	2.7	18	87	12	66	73	0	18	8	1.07
56623--56690	20	3.4	21	80	17	74	72	1	20	5	1.14
56621--56680	16	3.6	16	86	6	66	75	0	20	5	0.99
57535--57596	25	2.5	25	85	10	83	37	6	1	54	1.36
66979--67038	21	2.9	21	94	0	102	30	8	16	45	1.77
67094--67167	21	3.5	21	79	0	76	21	17	25	35	1.95
69274--69347	20	3.7	19	77	15	69	25	14	31	28	1.95
69293--69348	22	2.7	21	83	8	69	26	16	30	26	1.96
69390--69431	22	1.9	22	90	0	66	35	16	23	23	1.95
69753--69897	59	2.5	58	79	2	173	31	14	22	32	1.94
70292--70685	68	5.8	68	90	0	581	32	12	23	32	1.91
74431--74472	22	1.9	22	85	0	57	35	16	21	26	1.94
74817--74960	59	2.5	59	85	3	202	32	14	19	33	1.92
75335--75657	135	2.4	136	92	1	540	31	13	23	31	1.93
75333--75657	68	4.8	68	90	0	517	31	12	24	31	1.93
76100--76213	49	2.3	49	87	3	158	51	6	21	20	1.68
82263--82299	18	1.9	19	89	10	58	67	32	0	0	0.91
83586--83616	15	2.0	16	93	6	55	32	6	3	58	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95584--95686	8	12.0	8	72	19	57	75	1	16	5	1.08
96629--97237	105	5.8	105	86	1	799	40	17	19	23	1.91
96629--97237	211	2.9	207	86	2	806	40	17	19	23	1.91
98808--98838	15	2.0	16	93	6	55	32	6	3	58	1.40
102050--102136	43	2.0	43	100	0	174	43	6	4	44	1.51
103265--103338	37	2.0	37	94	0	130	35	18	10	35	1.86
107277--107363	3	27.3	3	73	23	63	66	1	1	31	1.06
107280--107351	7	10.3	7	81	11	76	66	0	1	31	1.00
107288--107351	13	4.9	13	77	19	71	65	0	1	32	1.02
107276--107363	20	4.5	20	80	12	94	67	1	1	30	1.06
107318--107361	23	1.9	23	81	9	54	68	2	0	29	1.02
107277--107369	40	2.3	40	87	3	125	64	2	1	32	1.12
107459--107756	75	4.0	75	79	11	306	43	8	4	43	1.53
107458--107756	39	8.0	37	78	9	268	43	8	4	44	1.53
107461--107756	114	2.6	112	83	7	393	43	8	4	43	1.53
107720--107779	23	2.5	24	83	2	86	46	11	1	40	1.50
118216--118254	20	2.0	20	85	10	53	28	5	15	51	1.64
120851--120929	20	4.0	20	79	12	83	65	1	1	31	1.08
120852--120941	27	3.2	27	77	13	85	64	2	1	32	1.13
120861--120928	7	10.3	7	76	19	58	64	0	1	33	1.02
120982--121203	36	6.1	37	83	10	278	42	7	3	46	1.50
120960--121201	112	2.2	111	81	9	294	42	7	4	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120982--121201	76	3.0	72	81	10	259	42	7	3	46	1.50
121920--121946	2	13.5	2	100	0	54	51	0	0	48	1.00
122069--122126	2	30.5	2	76	10	59	53	0	0	46	1.00
125505--125579	34	2.2	34	80	0	87	32	24	10	33	1.89

Tables:   1

The End!