genome.fa.s6022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006022.1 Hibiscus syriacus cultivar Beakdansim tig00014210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138792

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3221--3262	21	2.0	21	90	0	66	26	26	21	26	1.99
3390--3456	34	2.0	34	88	5	100	19	23	34	22	1.97
3425--3485	22	3.1	19	78	17	70	14	29	36	19	1.92
3443--3485	22	2.0	22	95	0	77	11	27	39	20	1.88
6808--6849	21	2.0	21	95	0	75	26	28	21	23	1.99
6963--7026	15	4.0	15	74	18	58	21	25	32	20	1.97
7012--7071	20	3.0	20	90	4	95	15	30	35	20	1.93
6962--7046	34	2.5	34	90	1	134	18	25	34	21	1.96
8646--8693	23	2.1	23	88	0	69	37	8	10	43	1.69
9013--9116	37	2.8	37	88	0	145	40	14	14	30	1.86
9813--9858	22	2.1	22	87	0	65	28	4	0	67	1.10
9824--9876	23	2.2	24	83	12	65	22	1	0	75	0.90
9749--9886	19	7.6	18	69	22	67	28	4	1	65	1.20
9973--10028	19	2.9	19	75	19	62	23	8	1	66	1.30
14325--14378	15	3.5	15	81	18	67	79	7	12	0	0.92
15993--16945	106	9.0	106	89	0	1375	34	23	18	23	1.96
17695--17773	37	2.1	37	88	0	122	41	15	15	27	1.87
18216--18263	23	2.0	24	84	11	64	27	2	0	70	0.98
18462--18565	43	2.3	46	75	14	106	29	4	0	64	1.20
18491--18545	22	2.5	22	80	11	60	29	3	0	67	1.08
18491--18564	21	3.3	23	76	17	66	29	4	0	66	1.10
18491--18579	43	2.1	43	81	8	101	26	4	1	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18664--18719	19	2.9	19	75	19	62	23	8	1	66	1.30
24090--24140	24	2.1	24	82	7	59	29	25	25	19	1.99
28574--28614	15	2.7	15	88	0	55	29	19	17	34	1.94
33771--34021	118	2.1	117	86	3	335	35	9	22	31	1.87
33800--34021	58	3.8	58	71	7	169	36	9	22	31	1.86
33803--34061	118	2.2	118	83	2	306	38	9	22	29	1.86
33803--34131	118	2.8	117	80	2	293	37	9	23	29	1.87
37494--37714	37	5.9	37	77	12	193	43	4	9	42	1.58
37500--37714	74	2.9	75	79	7	233	42	4	9	42	1.58
37742--37774	13	2.4	14	85	10	50	18	0	6	75	1.00
37742--37779	12	2.9	13	92	7	60	18	0	5	76	0.97
39639--39708	23	3.0	23	85	0	95	21	22	24	31	1.98
50321--50352	14	2.4	14	94	5	57	65	0	0	34	0.93
52190--52245	16	3.5	16	78	9	69	57	0	1	41	1.09
52210--52242	13	2.5	13	100	0	66	57	0	0	42	0.98
52175--52247	32	2.4	30	88	6	103	57	1	1	39	1.16
52190--52229	19	2.1	19	95	0	71	57	0	2	40	1.12
52199--52254	16	3.5	16	78	9	69	55	0	1	42	1.10
56889--56929	17	2.4	16	84	11	55	82	0	2	14	0.76
57764--57797	15	2.3	15	89	0	50	0	2	14	82	0.79
57992--58265	137	2.0	137	99	0	539	31	13	31	23	1.93
62727--63000	137	2.0	137	97	0	521	31	13	31	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67252--67305	6	9.0	6	78	11	58	0	5	12	81	0.85
67476--67749	137	2.0	137	98	0	530	31	13	31	23	1.93
72218--72490	137	2.0	137	99	0	537	30	13	31	23	1.94
78461--78500	16	2.5	16	100	0	80	10	25	7	57	1.57
78461--78513	16	3.2	16	91	2	70	13	20	5	60	1.53
80659--80705	18	2.6	18	100	0	94	31	19	21	27	1.97
81300--81403	23	4.4	24	79	7	115	20	21	25	33	1.97
81308--81424	24	5.0	24	75	13	73	23	19	23	33	1.97
86482--86667	75	2.4	79	82	9	224	40	2	10	47	1.49
86482--86672	37	5.0	37	83	8	204	41	2	9	46	1.49
86775--86805	2	15.5	2	93	0	53	51	0	0	48	1.00
89154--89185	15	2.1	15	94	0	55	6	9	0	84	0.78
89154--89192	20	2.1	18	85	9	51	10	7	0	82	0.86
95671--95808	39	3.6	37	87	5	168	44	2	10	42	1.53
95671--95812	37	3.7	38	85	9	180	45	3	9	41	1.54
95791--95834	23	1.9	23	95	0	79	43	2	13	40	1.57
95752--95870	58	2.0	58	87	9	168	44	3	10	42	1.54
95814--95971	36	4.4	36	79	11	175	42	3	10	44	1.54
95803--95971	70	2.4	70	88	4	241	42	3	10	43	1.56
96073--96114	2	21.5	2	85	4	59	42	0	0	57	0.99
97296--97360	25	2.6	24	80	9	67	18	10	6	64	1.45
100381--100952	267	2.1	267	81	2	657	30	14	21	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100381--100955	134	4.3	134	81	4	611	30	14	21	33	1.93
101249--102472	233	5.3	232	82	5	1344	35	16	14	33	1.90
101249--102472	464	2.6	464	82	5	1434	35	16	14	33	1.90
118035--118078	23	1.9	23	90	0	70	40	25	15	18	1.90
118032--118086	23	2.4	23	78	0	65	34	25	14	25	1.94
118045--118094	23	2.2	23	81	0	55	40	28	16	16	1.89
118748--118797	21	2.4	21	86	3	66	34	20	12	34	1.89
122992--123041	18	2.6	19	76	17	50	30	18	24	28	1.97
128842--128945	31	3.6	28	79	14	97	34	11	12	41	1.79
130247--130295	16	3.1	15	82	11	55	77	4	2	16	1.01
130255--130304	16	3.2	15	83	8	57	76	4	4	16	1.10
130386--130431	24	1.9	24	81	0	56	65	6	4	23	1.35
130787--130818	11	2.6	13	85	14	50	75	9	15	0	1.05
131954--132039	37	2.3	38	88	6	122	37	15	16	31	1.89
132492--132910	109	3.8	109	82	6	519	42	18	9	30	1.82
132499--132929	220	2.0	219	87	5	631	42	17	9	31	1.81
137509--137574	14	4.4	14	79	11	69	77	6	1	15	1.04

Tables:   1

The End!