genome.fa.s6024.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006024.1 Hibiscus syriacus cultivar Beakdansim tig00014214_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91735

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246--305	28	2.1	28	84	6	77	38	15	10	36	1.80
412--490	29	2.8	26	80	16	86	37	7	12	41	1.72
1812--1860	16	3.1	15	82	11	55	77	4	2	16	1.01
1820--1869	16	3.2	15	83	8	57	76	4	4	16	1.10
1951--1996	24	1.9	24	81	0	56	65	6	4	23	1.35
3529--3616	39	2.3	39	90	2	133	36	14	17	31	1.90
3624--3889	136	2.0	136	88	1	399	26	22	16	34	1.95
4072--4495	110	3.8	108	82	6	519	42	18	9	29	1.81
4079--4516	221	2.0	224	88	4	663	42	17	9	30	1.80
9139--9209	16	4.5	15	78	18	65	77	5	1	15	1.02
9154--9200	15	3.1	16	76	17	55	78	4	2	14	0.99
9597--9662	28	2.4	28	89	0	96	25	42	19	12	1.86
10446--10470	9	2.8	9	100	0	50	32	8	36	24	1.84
12087--12136	22	2.3	22	89	0	82	28	22	24	26	1.99
18428--18452	12	2.1	12	100	0	50	16	40	0	44	1.47
20246--20529	144	2.0	144	97	0	532	44	11	15	27	1.82
28762--28822	25	2.5	24	81	5	77	80	1	13	4	0.95
32848--32898	26	2.0	26	88	0	75	78	1	13	5	1.02
32854--32894	21	1.9	22	90	5	66	75	2	14	7	1.12
36936--36978	23	1.9	22	85	4	59	76	2	13	6	1.08
53179--53244	32	2.1	32	82	0	78	34	16	18	30	1.93
55911--55957	24	2.0	24	95	0	85	31	25	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55964--56032	23	3.0	23	80	0	84	33	26	20	20	1.97
56156--56184	12	2.4	12	100	0	58	34	24	10	31	1.89
61837--61895	24	2.5	24	85	0	64	33	22	22	22	1.97
61895--61939	23	1.9	24	86	4	65	28	26	20	24	1.99
63055--63163	24	4.5	24	83	0	128	51	16	7	24	1.70
67461--67503	23	1.9	22	85	4	59	58	0	11	30	1.34
67528--67683	67	2.3	67	78	5	163	27	14	25	32	1.94
70269--70346	23	3.5	22	71	11	77	41	23	20	15	1.90
75601--75630	12	2.4	12	94	5	51	73	0	10	16	1.09
77274--77307	14	2.4	14	85	0	50	58	2	5	32	1.37
77268--77417	21	7.1	21	74	23	104	55	3	1	40	1.25
77263--77414	12	12.1	13	71	22	103	56	2	1	39	1.21
77264--77414	28	5.9	25	75	19	116	56	2	1	39	1.22
78823--78921	49	2.0	49	94	0	171	30	13	12	44	1.80
89667--89719	23	2.3	23	80	3	63	3	13	41	41	1.62

Tables:   1

The End!