Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006026.1 Hibiscus syriacus cultivar Beakdansim tig00014226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79289

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2689--2750
13
4.7
14
88
7
87
33
19
17
29
1.95
3001--3048
23
2.1
23
88
0
69
41
12
16
29
1.85
3111--3140
11
2.6
12
94
5
53
46
36
16
0
1.47
3111--3140
6
5.2
6
92
8
53
46
36
16
0
1.47
3421--3445
5
5.0
5
100
0
50
20
40
20
20
1.92
5490--5536
22
2.1
22
84
7
60
8
57
0
34
1.29
5489--5541
22
2.3
22
74
9
52
7
60
0
32
1.25
5503--5539
12
3.2
12
77
14
51
8
54
0
37
1.30
5510--5590
37
2.2
38
88
6
121
2
62
1
33
1.16
5533--5590
12
4.8
12
79
12
73
0
65
1
32
1.03
5533--5599
26
2.8
24
80
10
82
0
65
1
32
1.02
7300--7341
22
1.9
22
85
9
59
57
11
7
23
1.59
22686--22726
21
2.0
21
90
0
64
48
0
0
51
1.00
23628--23706
28
2.8
28
74
14
81
51
3
1
43
1.27
24943--24989
22
2.1
22
84
7
60
57
0
2
40
1.11
26657--26729
35
2.1
35
100
0
146
19
16
27
36
1.93
28433--28507
25
3.0
25
80
2
87
36
13
5
45
1.66
29724--29763
22
1.9
21
85
10
55
42
10
17
30
1.82
36910--36997
9
9.3
9
73
9
68
18
27
26
28
1.98
36921--36995
19
3.9
20
75
16
70
17
26
28
28
1.98
36910--36997
29
3.1
28
78
12
81
18
27
26
28
1.98
37009--37046
7
5.4
7
93
0
67
15
26
28
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44215--44311
19
5.1
19
82
10
117
18
26
27
26
1.98
44200--44313
29
4.0
29
81
11
119
17
27
26
28
1.98
44195--44307
10
11.8
9
72
12
73
18
26
26
28
1.98
44262--44313
9
5.6
9
82
8
68
15
28
30
25
1.96
44300--44368
27
2.4
28
88
9
95
18
43
23
14
1.87
44315--44362
22
2.2
22
92
0
78
20
47
20
10
1.79
52259--52294
18
2.0
18
88
0
54
72
2
16
8
1.21
57273--57380
7
15.0
7
77
13
87
77
0
17
4
0.93
57281--57381
8
12.5
8
72
16
57
78
0
16
4
0.92
57265--57367
30
3.6
29
72
22
92
77
0
17
4
0.93
58312--58732
104
3.9
104
78
10
360
39
16
19
24
1.92
58627--59022
165
2.4
159
80
7
429
35
16
19
28
1.94
66594--66628
14
2.5
14
85
0
52
51
22
0
25
1.48
66767--66811
22
2.0
23
86
4
65
40
28
0
31
1.57
69294--69328
15
2.3
15
100
0
70
28
37
22
11
1.89
69379--69561
43
4.3
43
83
2
215
23
17
18
40
1.90
72396--72534
42
3.3
41
81
3
170
35
17
19
27
1.95
72537--72581
23
2.0
23
100
0
90
22
6
13
57
1.59
79252--79280
13
2.2
13
100
0
58
24
27
6
41
1.80

Tables:   1

The End!