genome.fa.s6027.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006027.1 Hibiscus syriacus cultivar Beakdansim tig00014228_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71887

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3893--3936	3	14.7	3	81	9	54	61	0	2	36	1.09
3897--3936	17	2.4	17	91	4	64	62	0	2	35	1.09
3901--3936	14	2.6	14	91	4	56	63	0	2	33	1.08
15994--16876	81	10.9	81	83	3	1010	32	22	10	34	1.89
15992--16876	242	3.7	240	84	3	1080	32	22	10	34	1.89
15979--16808	323	2.6	321	84	5	1030	33	22	10	33	1.89
17038--17171	57	2.4	57	87	1	189	33	14	11	40	1.82
21195--21366	46	3.8	45	87	3	231	40	7	21	30	1.81
24749--25789	81	12.9	81	83	2	1200	32	23	10	34	1.88
24749--25789	242	4.3	241	83	3	1173	32	23	10	34	1.88
28089--28133	2	22.5	2	100	0	90	48	0	0	51	1.00
29704--30584	81	10.9	81	83	1	944	31	22	11	34	1.89
30757--30880	57	2.2	57	86	5	180	33	19	8	39	1.81
36861--36894	15	2.3	15	100	0	68	11	26	32	29	1.92
37551--37727	85	2.1	84	82	9	216	32	16	18	32	1.94
44373--44458	39	2.2	39	95	0	154	43	18	8	30	1.79
59371--59445	32	2.3	32	83	0	96	30	9	18	41	1.82
63233--63539	81	3.8	81	83	2	357	37	11	21	29	1.89
63233--63536	162	1.9	163	86	2	432	37	11	21	29	1.89
63654--64032	45	8.4	45	89	0	533	37	11	22	27	1.89
63608--64032	90	4.7	90	87	1	503	38	11	23	27	1.89
63881--63950	22	3.1	22	66	11	61	41	10	22	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67932--68261	135	2.5	135	88	1	475	36	11	25	26	1.90
67885--68286	45	8.9	45	84	2	425	38	11	24	26	1.89
69020--69096	32	2.4	32	82	4	93	28	18	12	40	1.87

Tables:   1

The End!