Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006028.1 Hibiscus syriacus cultivar Beakdansim tig00014231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 182679
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:4098 original size:30 final size:30
Alignment explanation
Indices: 4062--4122 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
4052 TCAAAATAAT
4062 TTTTAGAGCTATTTTGACCGGTTTGACCGG
1 TTTTAGAGCTATTTTGACCGGTTTGACCGG
4092 TTTTAGAGCTATTTTGACCGGTTTGACCGG
1 TTTTAGAGCTATTTTGACCGGTTTGACCGG
4122 T
1 T
4123 CACAACCCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.16, C:0.16, G:0.26, T:0.41
Consensus pattern (30 bp):
TTTTAGAGCTATTTTGACCGGTTTGACCGG
Found at i:4171 original size:16 final size:17
Alignment explanation
Indices: 4129--4172 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
4119 CGGTCACAAC
*
4129 CCGATCCGACCCGATGA
1 CCGACCCGACCCGATGA
*
4146 CCGACCCGACCCGTTGA
1 CCGACCCGACCCGATGA
*
4163 -CGACTCGACC
1 CCGACCCGACC
4173 ATTACGACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.20, C:0.45, G:0.23, T:0.11
Consensus pattern (17 bp):
CCGACCCGACCCGATGA
Found at i:6675 original size:24 final size:24
Alignment explanation
Indices: 6643--6752 Score: 120
Period size: 24 Copynumber: 4.7 Consensus size: 24
6633 ATTTGAATTA
* *
6643 TGATCTGATACTTGACAAGGATTC
1 TGATATGATACTTGACATGGATTC
6667 TGATATGATA-TCTGACATGGATTC
1 TGATATGATACT-TGACATGGATTC
*
6691 TG--ATGATACTTGACTTGGATTC
1 TGATATGATACTTGACATGGATTC
* *
6713 TGATCTGATACTTGACCT-GATTTC
1 TGATATGATACTTGACATGGA-TTC
*
6737 TGATATGATGCTTGAC
1 TGATATGATACTTGAC
6753 CTGATTTATG
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
22 19 0.26
23 4 0.05
24 51 0.69
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TGATATGATACTTGACATGGATTC
Found at i:6769 original size:24 final size:24
Alignment explanation
Indices: 6693--6762 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
6683 ATGGATTCTG
* *
6693 ATGATACTTGACTTGGA-TTCTGAT
1 ATGATACTTGACCT-GATTTATGAT
* *
6717 CTGATACTTGACCTGATTTCTGAT
1 ATGATACTTGACCTGATTTATGAT
*
6741 ATGATGCTTGACCTGATTTATG
1 ATGATACTTGACCTGATTTATG
6763 TTTTGATTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 2 0.05
24 38 0.95
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (24 bp):
ATGATACTTGACCTGATTTATGAT
Found at i:6934 original size:43 final size:43
Alignment explanation
Indices: 6868--6962 Score: 165
Period size: 43 Copynumber: 2.2 Consensus size: 43
6858 GGGCCTTACT
6868 TGGTGTGTTGGTGGGTGTATGGTTCTGGGG-AACCTACACATTA
1 TGGTGTGTTGGTGGGTGTATGGTTC-GGGGAAACCTACACATTA
*
6911 TGGTATGTTGGTGGGTGTATGGTTCGGGGAAACCTACACATTA
1 TGGTGTGTTGGTGGGTGTATGGTTCGGGGAAACCTACACATTA
6954 TGGTGTGTT
1 TGGTGTGTT
6963 CGGTTGGAGG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 4 0.08
43 45 0.92
ACGTcount: A:0.17, C:0.11, G:0.37, T:0.36
Consensus pattern (43 bp):
TGGTGTGTTGGTGGGTGTATGGTTCGGGGAAACCTACACATTA
Found at i:8342 original size:83 final size:81
Alignment explanation
Indices: 8182--8344 Score: 281
Period size: 83 Copynumber: 2.0 Consensus size: 81
8172 TTATGAAAAC
* *
8182 ATTAAAAGTTTAAATACTAAAACAGACCAAATTGATAATTCAAGTATTAAAATATAATTTACCCA
1 ATTAAAAGTTTAAATACTAAAACAGACAAAACTGATAATTCAAGTATTAAAATATAATTTACCCA
8247 ATAATGTTAGTCCAAT
66 ATAATGTTAGTCCAAT
*
8263 ATTAAAAGTTTAAATACTAAAACAGACTAAAACTGATAATTTAAGTATTAAACATATAATTTACC
1 ATTAAAAGTTTAAATACTAAAACAGAC-AAAACTGATAATTCAAGTATTAAA-ATATAATTTACC
8328 CAATAATGTTAGTCCAA
64 CAATAATGTTAGTCCAA
8345 GAATCTTCGT
Statistics
Matches: 77, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
81 27 0.35
82 21 0.27
83 29 0.38
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.32
Consensus pattern (81 bp):
ATTAAAAGTTTAAATACTAAAACAGACAAAACTGATAATTCAAGTATTAAAATATAATTTACCCA
ATAATGTTAGTCCAAT
Found at i:8810 original size:18 final size:18
Alignment explanation
Indices: 8769--8810 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
8759 ATCATATTTA
8769 AAATTTAGTTTTTGTTTC
1 AAATTTAGTTTTTGTTTC
*
8787 -ATTTTAGTATTTTG-TTC
1 AAATTTAGT-TTTTGTTTC
8804 AAATTTA
1 AAATTTA
8811 ACATTAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.60
Consensus pattern (18 bp):
AAATTTAGTTTTTGTTTC
Found at i:9068 original size:17 final size:18
Alignment explanation
Indices: 9037--9070 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9027 TGTACTTAAA
9037 TTTTTTAAATCATAAGTG
1 TTTTTTAAATCATAAGTG
*
9055 TTTTTTTAAT-ATAAGT
1 TTTTTTAAATCATAAGT
9071 AACTATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (18 bp):
TTTTTTAAATCATAAGTG
Found at i:9590 original size:16 final size:17
Alignment explanation
Indices: 9550--9593 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
9540 ATAAATAATT
9550 TTTTAATTA-TAAGATA
1 TTTTAATTATTAAGATA
9566 TTATT--TTATTAAG-TA
1 TT-TTAATTATTAAGATA
9581 TTTTAATTATTAA
1 TTTTAATTATTAA
9594 TTATGTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
14 2 0.08
15 7 0.29
16 13 0.54
17 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTTAATTATTAAGATA
Found at i:12014 original size:19 final size:19
Alignment explanation
Indices: 11987--12023 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11977 AGATTCTGAT
*
11987 ATTAGATTATATCATATAG
1 ATTAAATTATATCATATAG
*
12006 ATTAAATTATATCGTATA
1 ATTAAATTATATCATATA
12024 TCAGTTAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.43
Consensus pattern (19 bp):
ATTAAATTATATCATATAG
Found at i:14523 original size:26 final size:26
Alignment explanation
Indices: 14489--14560 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
14479 AAATAATTTT
*
14489 AAAATTTAAGTACTTAATTGTAT-AA
1 AAAAATTAAGTACTTAATTGTATCAA
*
14514 AAAAACTTAAGTACCTAATTGTATCAA
1 AAAAA-TTAAGTACTTAATTGTATCAA
* *
14541 AAAAATTAGGTACTCAATTG
1 AAAAATTAAGTACTTAATTG
14561 CACCATTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
25 4 0.10
26 29 0.73
27 7 0.17
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (26 bp):
AAAAATTAAGTACTTAATTGTATCAA
Found at i:15085 original size:21 final size:22
Alignment explanation
Indices: 15059--15099 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
15049 TCGAATTTAG
*
15059 TAAAAAATAAAC-TTAAAAAAA
1 TAAAAAAAAAACATTAAAAAAA
15080 TAAAAAAAAAACATTAAAAA
1 TAAAAAAAAAACATTAAAAA
15100 GAAATCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (22 bp):
TAAAAAAAAAACATTAAAAAAA
Found at i:15203 original size:2 final size:2
Alignment explanation
Indices: 15196--15222 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15186 TTAAAAATTA
15196 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
15223 AATAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15761 original size:19 final size:19
Alignment explanation
Indices: 15737--15776 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
15727 CTCAAACATC
15737 AAACCCTAAACCATTAACT
1 AAACCCTAAACCATTAACT
15756 AAACCCTAAACCATTAACT
1 AAACCCTAAACCATTAACT
15775 AA
1 AA
15777 GTAACTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (19 bp):
AAACCCTAAACCATTAACT
Found at i:16638 original size:60 final size:60
Alignment explanation
Indices: 16572--16703 Score: 142
Period size: 60 Copynumber: 2.2 Consensus size: 60
16562 TAGTTGGGTG
* * * ** *
16572 ATCATTTTGTAACTTTTAATAGTCGTTAGACTTAACAAAACAACGT-TC-TATAGTCAGAGA
1 ATCATTTTATAACTTATAACAGTCGAGAAACTTAACAAAACAA--TATCTTATAGTCAGAGA
* *
16632 ATCATTTTATAACTTATAACAGTTGAGAAACTTAATAAAACAATATCTTATAGTCAGAGA
1 ATCATTTTATAACTTATAACAGTCGAGAAACTTAACAAAACAATATCTTATAGTCAGAGA
*
16692 ACCATTTGTATA
1 ATCATTT-TATA
16704 TTTAATCTTA
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
58 1 0.02
59 2 0.03
60 53 0.88
61 4 0.07
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.35
Consensus pattern (60 bp):
ATCATTTTATAACTTATAACAGTCGAGAAACTTAACAAAACAATATCTTATAGTCAGAGA
Found at i:17000 original size:8 final size:8
Alignment explanation
Indices: 16987--17012 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
16977 TTTAAACAAT
16987 AAATTTTA
1 AAATTTTA
16995 AAATTTTA
1 AAATTTTA
17003 AAATTTTA
1 AAATTTTA
17011 AA
1 AA
17013 TAAAACATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
AAATTTTA
Found at i:17159 original size:2 final size:2
Alignment explanation
Indices: 17152--17179 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
17142 TTGATTTTAA
17152 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17180 GTCATCGTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18481 original size:17 final size:18
Alignment explanation
Indices: 18459--18492 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18449 TCAGTCGGTC
18459 CGGTTC-GAACGGTTCAG
1 CGGTTCTGAACGGTTCAG
*
18476 CGGTTCTGACCGGTTCA
1 CGGTTCTGAACGGTTCA
18493 CTAGTAGCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.26
Consensus pattern (18 bp):
CGGTTCTGAACGGTTCAG
Found at i:23016 original size:29 final size:29
Alignment explanation
Indices: 22971--23028 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
22961 GTGTTGGCCG
22971 TAGGTCGCCATGCCTTCCAGGCGACCTAC
1 TAGGTCGCCATGCCTTCCAGGCGACCTAC
* * *
23000 TAGGTCGCCATGTCTTCCCGGCGAGCTAC
1 TAGGTCGCCATGCCTTCCAGGCGACCTAC
23029 AAGAGATTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.16, C:0.36, G:0.26, T:0.22
Consensus pattern (29 bp):
TAGGTCGCCATGCCTTCCAGGCGACCTAC
Found at i:23090 original size:14 final size:14
Alignment explanation
Indices: 23071--23151 Score: 90
Period size: 14 Copynumber: 5.4 Consensus size: 14
23061 CGCTGGGCAT
*
23071 CCGAGGCCACCCGA
1 CCGAGGCCATCCGA
23085 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
23099 CCGAGGCCATCCGAGAGCA
1 CCGAGGCCATCC----G-A
23118 TCCGAGGCCATCCGA
1 -CCGAGGCCATCCGA
23133 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
23147 ACGAG
1 CCGAG
23152 CTATGCGAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
14 43 0.73
15 1 0.02
16 1 0.02
18 1 0.02
19 1 0.02
20 12 0.20
ACGTcount: A:0.23, C:0.41, G:0.30, T:0.06
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:23123 original size:48 final size:47
Alignment explanation
Indices: 23067--23171 Score: 165
Period size: 48 Copynumber: 2.2 Consensus size: 47
23057 AACACGCTGG
*
23067 GCATCCGAGGCCACCCGACCGAGGCCATCCGACCGAGGCCATCCGAGA
1 GCATCCGAGGCCACCCGACCGAGGCCATCCGAACGA-GCCATCCGAGA
* * *
23115 GCATCCGAGGCCATCCGACCGAGGCCATCCGAACGAGCTATGCGAGA
1 GCATCCGAGGCCACCCGACCGAGGCCATCCGAACGAGCCATCCGAGA
23162 GCATCCGAGG
1 GCATCCGAGG
23172 GCAACCGAGC
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 19 0.36
48 34 0.64
ACGTcount: A:0.24, C:0.37, G:0.30, T:0.09
Consensus pattern (47 bp):
GCATCCGAGGCCACCCGACCGAGGCCATCCGAACGAGCCATCCGAGA
Found at i:23146 original size:10 final size:10
Alignment explanation
Indices: 23099--23132 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
23089 GGCCATCCGA
23099 CCGAGGCCAT
1 CCGAGGCCAT
23109 CCGAGAG-CAT
1 CCGAG-GCCAT
23119 CCGAGGCCAT
1 CCGAGGCCAT
23129 CCGA
1 CCGA
23133 CCGAGGCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 1 0.05
10 20 0.91
11 1 0.05
ACGTcount: A:0.24, C:0.38, G:0.29, T:0.09
Consensus pattern (10 bp):
CCGAGGCCAT
Found at i:23185 original size:33 final size:33
Alignment explanation
Indices: 23133--23217 Score: 109
Period size: 33 Copynumber: 2.6 Consensus size: 33
23123 GGCCATCCGA
* * * *
23133 CCGAGGCCATCCGAACGAGCTATGCGAGAGCAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAGAGAAT
*
23166 CCGAGGGCAACCGAGCGAGCTATGCGAGGGAAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAGAGAAT
23199 CCGAGGG-AAGCCGAGCGAG
1 CCGAGGGCAA-CCGAGCGAG
23218 GGTAGGTCAC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 2 0.04
33 44 0.96
ACGTcount: A:0.27, C:0.27, G:0.38, T:0.08
Consensus pattern (33 bp):
CCGAGGGCAACCGAGCGAGCTATGCGAGAGAAT
Found at i:23303 original size:21 final size:21
Alignment explanation
Indices: 23277--23318 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
23267 GCCATGCAAC
23277 ACGTTCATTCTCTCTGTTTGA
1 ACGTTCATTCTCTCTGTTTGA
23298 ACGTTCATTCTCTCTGTTTGA
1 ACGTTCATTCTCTCTGTTTGA
23319 GCAAGGGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.48
Consensus pattern (21 bp):
ACGTTCATTCTCTCTGTTTGA
Found at i:23369 original size:29 final size:29
Alignment explanation
Indices: 23327--23441 Score: 230
Period size: 29 Copynumber: 4.0 Consensus size: 29
23317 GAGCAAGGGT
23327 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
23356 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
23385 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
23414 AGGTCGCCCGGAGTGCATGGCGACCTAC
1 AGGTCGCCCGGAGTGCATGGCGACCTAC
23442 GGCCAACACT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 86 1.00
ACGTcount: A:0.20, C:0.31, G:0.35, T:0.14
Consensus pattern (29 bp):
AGGTCGCCCGGAGTGCATGGCGACCTACA
Found at i:23798 original size:14 final size:14
Alignment explanation
Indices: 23779--23805 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23769 CATCCAAAGT
23779 CATCCGACCGAGGG
1 CATCCGACCGAGGG
23793 CATCCGACCGAGG
1 CATCCGACCGAGG
23806 CCATTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.37, G:0.33, T:0.07
Consensus pattern (14 bp):
CATCCGACCGAGGG
Found at i:23818 original size:14 final size:14
Alignment explanation
Indices: 23779--23809 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
23769 CATCCAAAGT
*
23779 CATCCGACCGAGGG
1 CATCCGACCGAGGC
23793 CATCCGACCGAGGC
1 CATCCGACCGAGGC
23807 CAT
1 CAT
23810 TCGAGCGAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.39, G:0.29, T:0.10
Consensus pattern (14 bp):
CATCCGACCGAGGC
Found at i:24546 original size:2 final size:2
Alignment explanation
Indices: 24539--24569 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
24529 TTCCATTTCT
24539 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24570 GATTGACAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24663 original size:25 final size:24
Alignment explanation
Indices: 24617--24663 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
24607 AGTTATTAAT
*
24617 TATTAGTTATTTAATAAGAAAAGA
1 TATTAGTTATTTAAAAAGAAAAGA
* *
24641 TATTAGCTTTTTTAAAAATAAAA
1 TATTAG-TTATTTAAAAAGAAAA
24664 TTAAAAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 6 0.32
25 13 0.68
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (24 bp):
TATTAGTTATTTAAAAAGAAAAGA
Found at i:28226 original size:29 final size:29
Alignment explanation
Indices: 28165--28248 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 29
28155 ATGAATCCTT
** * **
28165 GGTCGCCCCGAGTGCATGGCGACCTCCTT
1 GGTCGCCGGGAGTGCATGGCGACCTACGA
* *
28194 GGTCGCCGGGCGTGCATGGCGACCTAGGA
1 GGTCGCCGGGAGTGCATGGCGACCTACGA
*
28223 GGTCGCTGGGAGTGCATGGCGACCTA
1 GGTCGCCGGGAGTGCATGGCGACCTA
28249 TGGTTGGGTT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.13, C:0.30, G:0.39, T:0.18
Consensus pattern (29 bp):
GGTCGCCGGGAGTGCATGGCGACCTACGA
Found at i:37927 original size:2 final size:2
Alignment explanation
Indices: 37920--37954 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
37910 ATCATGTATG
37920 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37955 GAGGTTAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:38660 original size:26 final size:29
Alignment explanation
Indices: 38573--38660 Score: 69
Period size: 29 Copynumber: 3.1 Consensus size: 29
38563 TTATCATTTT
* * **
38573 ATAATTTTTAATAATTA-AAACTTAACAAA
1 ATAACTTTTAATAATTATAAAATTAA-TTA
* *
38602 ATAA-TATTTAATAATTATAAAATTATTTT
1 ATAACT-TTTAATAATTATAAAATTAATTA
38631 ATAACTTTTAATAA-T-TAAAA-TAATTA
1 ATAACTTTTAATAATTATAAAATTAATTA
38657 ATAA
1 ATAA
38661 AATAGTACCG
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
26 8 0.16
27 5 0.10
28 2 0.04
29 27 0.55
30 7 0.14
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (29 bp):
ATAACTTTTAATAATTATAAAATTAATTA
Found at i:42439 original size:55 final size:55
Alignment explanation
Indices: 42380--42872 Score: 346
Period size: 55 Copynumber: 9.1 Consensus size: 55
42370 GGGATAAGTG
* * * * * * *
42380 AGACTTGAAAAATCTTCA-AATGACGAGTCTGTTCCCTATTCCTTCAG-GAAGTATA
1 AGACTTGAACAATCTTCATAA-AATGTGTCTGCTCTCTATTCATTCAGAG-AGTATA
*
42435 AGACTCGAACAATCTTCATAAAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
1 AGACTTGAACAATCTTCATAAAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
42490 AGACTTGAACAATCTTCATAAAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
1 AGACTTGAACAATCTTCATAAAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
* * * * *
42545 AGACTTGAACAATCTTTAATAAAACAG-GTCCGCTCTCTACTCCTTCAGAGAGTAT-
1 AGACTTGAACAATC-TTCATAAAA-TGTGTCTGCTCTCTATTCATTCAGAGAGTATA
* * * * *
42600 AGAACTCGGAA-AATCTTCAATAAACA-G-GCCCGCTCTATATTCTTTCAGAGAGTATA
1 AG-ACT-TGAACAATCTTC-ATAAA-ATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
* * * * *
42656 GGAC-T---CAATCTTTA-ACAAATGTGTTTGCTCCCTATTCCTTCAGAGAGTAT-
1 AGACTTGAACAATCTTCATA-AAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
* * * * * * *
42706 AGAACTCGAGCAATCTTTATAAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTAT-
1 AG-ACTTGAACAATCTTCATAAAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
* * * *
42761 AGAACTCGAACAATCTTCA-ACGAACT-TGTCCGCTCCCTATTCATTCAGAGAGTATA
1 AG-ACTTGAACAATCTTCATA--AAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
* * * *
42817 GGAC-T---CAATCTTCA-ACGAACT-TGTCCGCTCCCTATTCATTCAGAGAGTATA
1 AGACTTGAACAATCTTCATA--AAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
*
42868 GGACT
1 AGACT
42873 CAAACTTCAA
Statistics
Matches: 370, Mismatches: 45, Indels: 49
0.80 0.10 0.11
Matches are distributed among these distances:
49 2 0.01
50 5 0.01
51 80 0.22
54 1 0.00
55 224 0.61
56 53 0.14
57 5 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (55 bp):
AGACTTGAACAATCTTCATAAAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
Found at i:42536 original size:110 final size:108
Alignment explanation
Indices: 42380--43225 Score: 554
Period size: 102 Copynumber: 8.0 Consensus size: 108
42370 GGGATAAGTG
* * * * *
42380 AGACTTGAAAAATCTTCA-AATGACGAGTCTGTTCCCTATTCCTTCAG-GAAGTATAAGACTCGA
1 AGACTTGAACAATCTTCATAA-AACG-GTCCGCTCTCTATTCCTTCAGAG-AGTATAAGACTCGA
* *
42443 ACAATCTTCATA-AAATGTGTCTGCTCTCTATTCATTCAGAGAGTAT
63 ACAATCTTCA-ACAAATGTGTCCGCTCCCTATTCATTCAGAGAGTAT
* * * *
42489 AAGACTTGAACAATCTTCATAAAATGTGTCTGCTCTCTATTCATTCAGAGAGTATAAGACTTGAA
1 -AGACTTGAACAATCTTCATAAAACG-GTCCGCTCTCTATTCCTTCAGAGAGTATAAGACTCGAA
* * * * * *
42554 CAATCTTTAATAAAACAG-GTCCGCTCTCTACTCCTTCAGAGAGTAT
64 CAATCTTCAA-CAAA-TGTGTCCGCTCCCTATTCATTCAGAGAGTAT
* * * * *
42600 AGAACTCGGAA-AATCTTCA-ATAAACAGGCCCGCTCTATATTCTTTCAGAGAGTATAGGACT--
1 AG-ACT-TGAACAATCTTCATA-AAAC-GGTCCGCTCTCTATTCCTTCAGAGAGTATAAGACTCG
* ** *
42661 --CAATCTTTAACAAATGTGTTTGCTCCCTATTCCTTCAGAGAGTAT
62 AACAATCTTCAACAAATGTGTCCGCTCCCTATTCATTCAGAGAGTAT
* * *
42706 AGAACTCGAGCAATCTTTATAAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTAT-AGAACTCGA
1 AG-ACTTGAACAATCTTCATAAAAC-GGTCCGCTCTCTATTCCTTCAGAGAGTATAAG-ACTCGA
*
42770 ACAATCTTCAACGAACT-TGTCCGCTCCCTATTCATTCAGAGAGTAT
63 ACAATCTTCAAC-AAATGTGTCCGCTCCCTATTCATTCAGAGAGTAT
* * * * *
42816 AGGAC-T---CAATCTTCA-ACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTC--
1 A-GACTTGAACAATCTTCATA-AAAC-GGTCCGCTCTCTATTCCTTCAGAGAGTATAAGACTCGA
* * *
42874 A-AA-CTTCAACGAACT-TGTCCGCTCCCTATTCCTTCAGAGTGTAT
63 ACAATCTTCAAC-AAATGTGTCCGCTCCCTATTCATTCAGAGAGTAT
* * * *
42918 AGGAC-T---CAATCTTCA-ACGAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT---
1 A-GACTTGAACAATCTTCATA-AAAC-GGTCCGCTCTCTATTCCTTCAGAGAGTATAAGACTCGA
*
42975 -CAATCTTCAACGAACT-TGTCCGCTCCCTATTCATTCAGAGAGTAT
63 ACAATCTTCAAC-AAATGTGTCCGCTCCCTATTCATTCAGAGAGTAT
* * * *
43020 AGGAC-T---CAATCTTCA-ACGAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT---
1 A-GACTTGAACAATCTTCATA-AAAC-GGTCCGCTCTCTATTCCTTCAGAGAGTATAAGACTCGA
*
43077 -CAATCTTCAACGAACT-TGTCCGCTCCCTATTCATTCAGAGAGTAT
63 ACAATCTTCAAC-AAATGTGTCCGCTCCCTATTCATTCAGAGAGTAT
* * * * *
43122 AGGAC-T---CAATCTTCA-ACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACT---
1 A-GACTTGAACAATCTTCATA-AAAC-GGTCCGCTCTCTATTCCTTCAGAGAGTATAAGACTCGA
*
43179 -CAATCTTCAACGAACT-TGTCCGCTCCCTATTCATTCAGAGAGTAT
63 ACAATCTTCAAC-AAATGTGTCCGCTCCCTATTCATTCAGAGAGTAT
43224 AG
1 AG
43226 GACTCAATCT
Statistics
Matches: 660, Mismatches: 53, Indels: 55
0.86 0.07 0.07
Matches are distributed among these distances:
101 3 0.00
102 338 0.51
103 2 0.00
104 1 0.00
105 5 0.01
106 114 0.17
107 12 0.02
109 1 0.00
110 101 0.15
111 78 0.12
112 5 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (108 bp):
AGACTTGAACAATCTTCATAAAACGGTCCGCTCTCTATTCCTTCAGAGAGTATAAGACTCGAACA
ATCTTCAACAAATGTGTCCGCTCCCTATTCATTCAGAGAGTAT
Found at i:42698 original size:51 final size:51
Alignment explanation
Indices: 42637--43240 Score: 933
Period size: 51 Copynumber: 11.7 Consensus size: 51
42627 GCCCGCTCTA
* * * **
42637 TATTCTTTCAGAGAGTATAGGACTCAATCTTTAAC-AAATGTGTTTGCTCCC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT-TGTCCGCTCCC
* * * * ** *
42688 TATTCCTTCAGAGAGTATAGAACTCGAGCAATCTTTATA-AAACGGGTCCGCTCTC
1 TATTCATTCAGAGAGTATAGGACT----CAATCTTCA-ACGAACTTGTCCGCTCCC
* *
42743 TATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACGAACTTGTCCGCTCCC
1 TATTCATTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCGCTCCC
42798 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
*
42849 TATTCATTCAGAGAGTATAGGACTCAAACTTCAACGAACTTGTCCGCTCCC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
* *
42900 TATTCCTTCAGAGTGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
*
42951 TATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
43002 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
*
43053 TATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
43104 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
43155 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
43206 TATTCATTCAGAGAGTATAGGACTCAATCTTCAAC
1 TATTCATTCAGAGAGTATAGGACTCAATCTTCAAC
43241 AAACGAATTT
Statistics
Matches: 522, Mismatches: 24, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
51 433 0.83
54 1 0.00
55 85 0.16
56 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (51 bp):
TATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC
Found at i:44666 original size:18 final size:18
Alignment explanation
Indices: 44594--44675 Score: 66
Period size: 18 Copynumber: 4.7 Consensus size: 18
44584 TTTTCTTCCC
*
44594 TTTTC-CATTTTTTCTTCT
1 TTTTCTCATTTTTTCGT-T
* *
44612 TTTTCT-TTTTTTTTGTT
1 TTTTCTCATTTTTTCGTT
44629 TTTTC-CATCATTTTT-GTT
1 TTTTCTCAT--TTTTTCGTT
*
44647 TTTTCTCATTTTTTCATT
1 TTTTCTCATTTTTTCGTT
44665 TTTTCTC-TTTT
1 TTTTCTCATTTT
44676 ATTTCTTCTT
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
17 16 0.30
18 29 0.55
19 8 0.15
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTTCTCATTTTTTCGTT
Found at i:49610 original size:34 final size:32
Alignment explanation
Indices: 49548--49617 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
49538 CCTTACAAAC
* *
49548 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACCTT
*
49580 TCCCTAGCTTTTACACGGGATAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACCTT
49614 TCCC
1 TCCC
49618 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACCTT
Found at i:49926 original size:21 final size:21
Alignment explanation
Indices: 49900--49941 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
49890 CCAGAATGGG
*
49900 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
49921 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
49942 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:50197 original size:31 final size:31
Alignment explanation
Indices: 50140--50230 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
50130 AAATTTTGAA
50140 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
50169 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
50200 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
50231 CCTTAAATTG
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.18
30 11 0.18
31 38 0.63
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.33
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:55356 original size:46 final size:44
Alignment explanation
Indices: 55287--55430 Score: 164
Period size: 45 Copynumber: 3.1 Consensus size: 44
55277 TGTTATCCAC
*
55287 AAAAAGAAATCCTAACC-TCATGATATCTAATTCGCATGCTTATTCAG
1 AAAAA-AAA-CCTAACCGT-ATGATATCTAGTTCGCATGCTTATTC-G
* *
55334 AAAATAAAACCTAACCGTATGATATCTAGTTTGCATGCTTGTTCG
1 AAAA-AAAACCTAACCGTATGATATCTAGTTCGCATGCTTATTCG
* *
55379 AAAAATAAACCTAACCGCATGATATCTAGTTCGCAAGCATTTATTCG
1 AAAAA-AAACCTAACCGTATGATATCTAGTTCGCATGC--TTATTCG
55426 AAAAA
1 AAAAA
55431 TGAAAATAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
44 1 0.01
45 34 0.40
46 30 0.35
47 19 0.22
48 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.29
Consensus pattern (44 bp):
AAAAAAAACCTAACCGTATGATATCTAGTTCGCATGCTTATTCG
Found at i:55401 original size:45 final size:44
Alignment explanation
Indices: 55286--55431 Score: 166
Period size: 46 Copynumber: 3.2 Consensus size: 44
55276 TTGTTATCCA
* * *
55286 CAAAAAGAAATCCTAACCTCATGATATCTAATTCGCATGCTTATT
1 CAAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCTTATT
* * *
55331 CAGAAAATAAAACCTAACCGTATGATATCTAGTTTGCATGCTTGTT
1 CA-AAAAT-AAACCTAACCGCATGATATCTAGTTCGCATGCTTATT
*
55377 CGAAAAATAAACCTAACCGCATGATATCTAGTTCGCAAGCATTTATT
1 C-AAAAATAAACCTAACCGCATGATATCTAGTTCGCATGC--TTATT
55424 CGAAAAAT
1 C-AAAAAT
55432 GAAAATAAAT
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
45 31 0.36
46 39 0.45
47 16 0.19
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.29
Consensus pattern (44 bp):
CAAAAATAAACCTAACCGCATGATATCTAGTTCGCATGCTTATT
Found at i:75412 original size:23 final size:23
Alignment explanation
Indices: 75386--75458 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
75376 ATATTTTACA
*
75386 ATATAAACACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
75409 ATATAAACGCTACCTATTATATT
1 ATATAAACGCTACCTATTACATT
* *
75432 ATATAAGCGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
75455 ATAT
1 ATAT
75459 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.36
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:75907 original size:23 final size:23
Alignment explanation
Indices: 75872--75944 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
75862 ATACTTTACA
* *
75872 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
75895 ATATAAACGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
75918 ATATAAACGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
75941 ATAT
1 ATAT
75945 TTTTACCTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.34
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:76166 original size:486 final size:487
Alignment explanation
Indices: 75255--76842 Score: 2693
Period size: 486 Copynumber: 3.3 Consensus size: 487
75245 TGTTTTTAAT
* *
75255 AAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAATATAACC
1 AAAATAAATCATTAGATGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACC
* * * * * * *
75320 TTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATGAAAAGGATAGATATTTTAC
66 TTAAATTAATGTTTTCCACAGTAAAAAAAGTGTGAACACTTTTATAAAAAGGATAAATACTTTAC
* *
75385 AATATAAACACTACCTATTACATTATATAAACGCTACCTATTATATTATATAAGCGCTACCTATT
131 AATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATT
* * *
75450 ACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAATTTT
196 ACATCATATTTTTACCTATTATATTGAAAGTGTACATACTTTTTATAAAAATGATCGATACTTTT
75515 TTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATAT
261 TTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATAT
75580 TAATTTAATAATTTCATTTACAC--AAAATTATTTGATTGTTTTGATATTTTATAAAATATTATT
326 TAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATT
75643 TAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTTT
391 TAGAATTTAAATTTAACAATATTAACCAAA-ATAATAATAAATATGTAATATATATGTTTATTTT
75708 TTTAATTTAATAATAATATATACCGTAACGTAA
455 TTTAATTTAATAATAATATATACCGTAACGTAA
* *
75741 AAAATAAATCATTAAATGCCTATAATTATTAAATTAATATCTTAAAACTCACTCAAAAGATAACC
1 AAAATAAATCATTAGATGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACC
75806 TTAAATTAATGTTTTCCACAGTAAAAAAAGTGTGAACACTTTTATAAAAAGGATAAATACTTTAC
66 TTAAATTAATGTTTTCCACAGTAAAAAAAGTGTGAACACTTTTATAAAAAGGATAAATACTTTAC
*
75871 AATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAACGCTACCTATT
131 AATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATT
75936 ACATCATATTTTTACCTATTATATTGAAAGTGTACATACTTTTTATAAAAATGATCGATACTTTT
196 ACATCATATTTTTACCTATTATATTGAAAGTGTACATACTTTTTATAAAAATGATCGATACTTTT
76001 TTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATAT
261 TTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATAT
76065 TAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATT
326 TAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATT
*
76130 TAGAATTTAAATTTAACAATATTAACCAAAATAATAATATATATG---T-T-TA----T-TTTTT
391 TAGAATTTAAATTTAACAATATTAACCAAAATAATAATAAATATGTAATATATATGTTTATTTTT
76185 TTAATTTAATAATAATATATACCGTAACGTAA
456 TTAATTTAATAATAATATATACCGTAACGTAA
*
76217 AAAATAAATCATTAGATGCCTATAATTATTAAATTAATATCTTAAAACTCACTCAAAAGATAACC
1 AAAATAAATCATTAGATGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACC
* * *
76282 TTAAATTAATGTTTTCCACAGTAAAAAAAAATGTTG-ACACTTTTATAAAAAGAATAGATACTTT
66 TTAAATTAATGTTTTCCACAGT-AAAAAAAGTG-TGAACACTTTTATAAAAAGGATAAATACTTT
76346 ACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTA
129 ACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTA
*
76411 TTACATCATATTTTTACTTATTATATTGAAAGTGTACATACTTTTTATAAAAATGATCGATACTT
194 TTACATCATATTTTTACCTATTATATTGAAAGTGTACATACTTTTTATAAAAATGATCGATACTT
*
76476 TTTTTAAAATTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAAT
259 TTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAAT
* *
76541 ATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATA
324 ATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTA
76606 TTTAGAATTTAAATTTAACAATATTAACCAAAATAATAATAAATATGTAATATATATGTTTATTG
389 TTTAGAATTTAAATTTAACAATATTAACCAAAATAATAATAAATATGTAATATATATGTTTATT-
* *
76671 TTTTTAATTTAATGATAATATATACCGTAACATAA
453 TTTTTAATTTAATAATAATATATACCGTAACGTAA
* * * *
76706 AAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCACTCAAAAGATAATC
1 AAAATAAATCATTAGATGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACC
* * ** *
76771 TTAAATTAATGTTTTTCACAGTGAAAAAAGT-ACAGACACTTTTATAAAAAAGATAAATACTTTA
66 TTAAATTAATGTTTTCCACAGTAAAAAAAGTGTGA-ACACTTTTATAAAAAGGATAAATACTTTA
76835 CAATATAA
130 CAATATAA
76843 CATGTAAAAA
Statistics
Matches: 1041, Mismatches: 43, Indels: 34
0.93 0.04 0.03
Matches are distributed among these distances:
476 123 0.12
477 192 0.18
478 146 0.14
481 3 0.00
482 2 0.00
483 3 0.00
485 60 0.06
486 284 0.27
487 71 0.07
488 43 0.04
489 114 0.11
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (487 bp):
AAAATAAATCATTAGATGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACC
TTAAATTAATGTTTTCCACAGTAAAAAAAGTGTGAACACTTTTATAAAAAGGATAAATACTTTAC
AATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATT
ACATCATATTTTTACCTATTATATTGAAAGTGTACATACTTTTTATAAAAATGATCGATACTTTT
TTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATAT
TAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATT
TAGAATTTAAATTTAACAATATTAACCAAAATAATAATAAATATGTAATATATATGTTTATTTTT
TTAATTTAATAATAATATATACCGTAACGTAA
Found at i:76384 original size:23 final size:23
Alignment explanation
Indices: 76349--76421 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
76339 ATACTTTACA
*
76349 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
76372 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
76395 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
76418 ATAT
1 ATAT
76422 TTTTACTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:77097 original size:11 final size:11
Alignment explanation
Indices: 77081--77105 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
77071 ATCCGGTAAT
77081 ACCGTATATTA
1 ACCGTATATTA
77092 ACCGTATATTA
1 ACCGTATATTA
77103 ACC
1 ACC
77106 CGTCTTTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (11 bp):
ACCGTATATTA
Found at i:78047 original size:20 final size:20
Alignment explanation
Indices: 78009--78047 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
77999 TCTTTGGTTA
* * *
78009 TTTTATTTTTCTAATTAAAT
1 TTTTATTTTACCAAATAAAT
78029 TTTTATTTTACCAAATAAA
1 TTTTATTTTACCAAATAAA
78048 AATAAATTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTATTTTACCAAATAAAT
Found at i:82177 original size:14 final size:13
Alignment explanation
Indices: 82149--82175 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82139 AAAATCTTAA
82149 TCGTTGATTTTTT
1 TCGTTGATTTTTT
82162 TCGTTGATTTTTT
1 TCGTTGATTTTTT
82175 T
1 T
82176 TCTATTGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.15, T:0.70
Consensus pattern (13 bp):
TCGTTGATTTTTT
Found at i:87721 original size:2 final size:2
Alignment explanation
Indices: 87716--87740 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
87706 TGTGTGTGTG
87716 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
87741 TTTAGTTCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:88436 original size:20 final size:20
Alignment explanation
Indices: 88378--88439 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
88368 TTTTTAGTGT
* *
88378 TAAAATATGTTATTTAATTA
1 TAAAATATATTATTTTATTA
* * **
88398 TTCAAATATAATAAATTATTA
1 -TAAAATATATTATTTTATTA
88419 TAAAATATATTATTTTATTA
1 TAAAATATATTATTTTATTA
88439 T
1 T
88440 TTTAAATAAT
Statistics
Matches: 31, Mismatches: 10, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
20 17 0.55
21 14 0.45
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
TAAAATATATTATTTTATTA
Found at i:89680 original size:228 final size:228
Alignment explanation
Indices: 89283--89772 Score: 876
Period size: 228 Copynumber: 2.1 Consensus size: 228
89273 GTTATATTGT
* * * *
89283 AAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTATTTCACTGTGAAAATATATTTATTATTA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
*
89348 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
66 TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
*
89413 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACAATATT-A
89478 AAAAAATTGAAACATAAATTACATAACTTT-AAA
195 AAAAAATTGAAACATAAATTACATAACTTTAAAA
89511 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATT
*
89576 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATC-AAATAATCAA
65 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
*
89640 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACAATATTA
130 ATAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACAATATTA
89705 AAAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAAATTGAAACATAAATTACATAACTTTAAAA
89739 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
89773 GTATAAAAGT
Statistics
Matches: 252, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
227 31 0.12
228 151 0.60
229 70 0.28
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (228 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACAATATTAA
AAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:90230 original size:181 final size:182
Alignment explanation
Indices: 89842--90259 Score: 606
Period size: 181 Copynumber: 2.3 Consensus size: 182
89832 CGATCCAAAT
* * * *
89842 AAAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATAGAAATGAT
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATAAAAATGAT
* * * *
89907 AAAACCGGTAAAGCGCTATCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCAACACTT
66 AAAACCGGTAAAACGCTACCGGATACATTGAAAGTGTCGATACTTTAATATAAGGATCAACACTT
* * * *
89972 CGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTT
131 CATGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTA
*
90024 AAAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGT-TACAAAATGA
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATA-AAAATGA
* * *
90088 TAAAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACT
65 TAAAACCGGTAAAACGCTACCGGATACATTGAAAGTGTCGATACTTTAATATAAGGATCAACACT
* * ** *
90152 TTATGAATTTAAAAGAGAATCAATTTTAGCGCCTATAATGTGTCGATACTTTA
130 TCATGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTA
* *
90205 AAAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTA
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTA
90260 AAATGATACC
Statistics
Matches: 210, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
181 113 0.54
182 97 0.46
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (182 bp):
AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATAAAAATGAT
AAAACCGGTAAAACGCTACCGGATACATTGAAAGTGTCGATACTTTAATATAAGGATCAACACTT
CATGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTA
Found at i:92505 original size:21 final size:21
Alignment explanation
Indices: 92481--92524 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
92471 AAGACAATCA
92481 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
92502 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
92523 AG
1 AG
92525 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:92597 original size:33 final size:33
Alignment explanation
Indices: 92560--92623 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
92550 ATAGATGGAG
*
92560 TGGTGAAAGAAGTAGAGGTGTTGAGGGGTGAAA
1 TGGTGAAAGAAGTAGAGGTGTTAAGGGGTGAAA
* *
92593 TGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 TGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
92624 TATTAAGATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.47, T:0.23
Consensus pattern (33 bp):
TGGTGAAAGAAGTAGAGGTGTTAAGGGGTGAAA
Found at i:94437 original size:19 final size:19
Alignment explanation
Indices: 94413--94461 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
94403 AATGTAGGGT
94413 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
94432 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
94451 TATTTTTGTAT
1 TAATTTTGTAT
94462 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:94930 original size:198 final size:198
Alignment explanation
Indices: 94580--95743 Score: 2210
Period size: 198 Copynumber: 5.9 Consensus size: 198
94570 CAATATGGCC
* *
94580 AACAGGGTGTAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
94645 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
*
94710 GAATATGTCTAAATAATGTGTCGACACTATTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
94775 TGGAA
194 TGGAA
94780 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
94845 CAAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
94909 AATATGTCTAAATAATGTGTCGACAC-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
94973 GAA
196 GAA
*
94976 AACAGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCTCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
95040 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
95105 AATATGTCTAAATAATGTGTCGACACTATTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
95170 GGAA
195 GGAA
95174 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
95239 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
95304 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
95369 GAA
196 GAA
95372 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
95437 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAT
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
95502 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
95567 GAA
196 GAA
95570 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
95634 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
95699 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
95744 CTAATTTAAA
Statistics
Matches: 949, Mismatches: 11, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
195 51 0.05
196 141 0.15
197 121 0.13
198 430 0.45
199 146 0.15
200 60 0.06
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAA
Found at i:97227 original size:6 final size:6
Alignment explanation
Indices: 97203--97294 Score: 76
Period size: 6 Copynumber: 15.3 Consensus size: 6
97193 AGCGGTCGCA
* * * * * *
97203 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GACGAT GAAGCT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* * * * * *
97251 GACGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT GA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA
97295 TGATCCAAAC
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.38, C:0.08, G:0.34, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:97253 original size:36 final size:36
Alignment explanation
Indices: 97206--97282 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
97196 GGTCGCAGAA
*
97206 GATGAAGCTGACGATGAAGATGACGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
* *
97242 GATGAAGCTGACGATGAAGATGATGACGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
97278 GATGA
1 GATGA
97283 TGATGAAGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.09, G:0.34, T:0.21
Consensus pattern (36 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGAC
Found at i:97286 original size:9 final size:9
Alignment explanation
Indices: 97218--97298 Score: 81
Period size: 9 Copynumber: 9.0 Consensus size: 9
97208 TGAAGCTGAC
*
97218 GATGAAGAT
1 GATGATGAT
*
97227 GACGATGAT
1 GATGATGAT
*
97236 GATGACGAT
1 GATGATGAT
* * *
97245 GAAGCTGAC
1 GATGATGAT
*
97254 GATGAAGAT
1 GATGATGAT
*
97263 GATGACGAT
1 GATGATGAT
97272 GATGATGAT
1 GATGATGAT
*
97281 GATGATGAA
1 GATGATGAT
97290 GATGATGAT
1 GATGATGAT
97299 CCAAACAAGT
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.37, C:0.06, G:0.33, T:0.23
Consensus pattern (9 bp):
GATGATGAT
Found at i:97298 original size:12 final size:12
Alignment explanation
Indices: 97206--97294 Score: 97
Period size: 12 Copynumber: 7.4 Consensus size: 12
97196 GGTCGCAGAA
*
97206 GATGAAGCTGAC
1 GATGAAGATGAC
97218 GATGAAGATGAC
1 GATGAAGATGAC
*
97230 GATGATGATGAC
1 GATGAAGATGAC
*
97242 GATGAAGCTGAC
1 GATGAAGATGAC
*
97254 GATGAAGATGAT
1 GATGAAGATGAC
* * *
97266 GACGATGATGAT
1 GATGAAGATGAC
* *
97278 GATGATGATGAA
1 GATGAAGATGAC
97290 GATGA
1 GATGA
97295 TGATCCAAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 67 1.00
ACGTcount: A:0.37, C:0.08, G:0.34, T:0.21
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:98522 original size:16 final size:16
Alignment explanation
Indices: 98490--98523 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
98480 TATCCACAAC
* *
98490 AAAGTGTCGATTTAAA
1 AAAGTGTCGACTGAAA
98506 AAAGTGTCGACTGAAA
1 AAAGTGTCGACTGAAA
98522 AA
1 AA
98524 TGTAATAGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.24
Consensus pattern (16 bp):
AAAGTGTCGACTGAAA
Found at i:98922 original size:23 final size:23
Alignment explanation
Indices: 98891--98963 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
98881 ATAGGTAAAA
*
98891 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
98914 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
98937 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
98960 ATAT
1 ATAT
98964 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:99353 original size:23 final size:23
Alignment explanation
Indices: 99322--99385 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
99312 ATAGGTAAAA
*
99322 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCACTT
* **
99345 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCACTT
99368 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
99386 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.05, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCACTT
Found at i:99392 original size:23 final size:23
Alignment explanation
Indices: 99322--99394 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
99312 ATAGGTAAAA
* **
99322 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGTGCTT
*
99345 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
99368 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
99391 ATAT
1 ATAT
99395 TGTAAAGTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:99647 original size:429 final size:430
Alignment explanation
Indices: 98688--99736 Score: 1926
Period size: 429 Copynumber: 2.4 Consensus size: 430
98678 GTTGTTAAAT
* *
98688 TTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
98752 ATGAAATTATTAAATTAATATTGTAGGTGGAAAATATGAAACACTA-TT-AAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACA-TACTTAAAAAAAATTGAAACA
*
98815 TAAATTACATAACTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATAT
130 TAAATTACAT-ATTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATAT
*
98880 AATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATG
194 AATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTATCGTTTATATAATG
98945 TAATAGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCTATACTTTTTTCAC
259 TAATAGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTG-CTATACTTTTTTCAC
99010 TGTGGAAAACATTAATTTAAGGTTATCTTTTGAGAGAGTTTTAAGATATTAATTTAGTAATTATA
323 TGTGGAAAACATTAATTTAAGGTTATCTTTTGAGAGAGTTTTAAGATATTAATTTAGTAATTATA
99075 GGCATCTAATGATTTATTTTTTACGTTACGATATATATTATTA
388 GGCATCTAATGATTTATTTTTTACGTTACGATATATATTATTA
99118 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
99183 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAAATTGAAACAT
99248 AAATTACATATTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATATTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
99313 TAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTATCGTTTATATAATGTA
* *
99378 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTG-TATACTTTTTTCATTGT
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGCTATACTTTTTTCACTGT
* *
99442 GGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
326 GGAAAACATTAATTTAAGGTTATCTTTTGAGAGAGTTTTAAGATATTAATTTAGTAATTATAGGC
* *
99507 GTCTAATGATTTATTTTTTACGTTACGATATTTATTATTA
391 ATCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
99547 TTAAATTAAAAATTCTTAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
99612 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAAATTGAAACAT
*
99677 AAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AAATTACATATTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
99737 CATATTATAA
Statistics
Matches: 603, Mismatches: 13, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
429 305 0.51
430 9 0.01
431 264 0.44
432 25 0.04
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (430 bp):
TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAAATTGAAACAT
AAATTACATATTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
TAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTATCGTTTATATAATGTA
ATAGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGCTATACTTTTTTCACTGT
GGAAAACATTAATTTAAGGTTATCTTTTGAGAGAGTTTTAAGATATTAATTTAGTAATTATAGGC
ATCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:102579 original size:25 final size:25
Alignment explanation
Indices: 102551--102615 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
102541 TTATCATTAA
*
102551 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATATACAATAACTACAT
****
102576 ATTTAGGTATATTTGTTAACTACAT
1 ATTTAGGTATATACAATAACTACAT
102601 ATTTAGGTATATACA
1 ATTTAGGTATATACA
102616 TATTTGTTGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATATACAATAACTACAT
Found at i:102929 original size:18 final size:18
Alignment explanation
Indices: 102908--102944 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
102898 GTAATTGGAG
102908 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
102926 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
102944 T
1 T
102945 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:102952 original size:24 final size:24
Alignment explanation
Indices: 102900--102946 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
102890 TTTCATATGT
* *
102900 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
102924 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
102947 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:103256 original size:39 final size:39
Alignment explanation
Indices: 103213--103299 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
103203 TCCGATGCTC
* *
103213 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAACAAAAGGAA
*
103252 ATCAAAATCCAAATCTCATATGATGCCAAACAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAACAAAAGGAA
103291 ATCAAAATC
1 ATCAAAATC
103300 TACAACTTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.49, C:0.21, G:0.13, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAACAAAAGGAA
Found at i:103751 original size:23 final size:23
Alignment explanation
Indices: 103720--103792 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
103710 ATAGGTAAAA
*
103720 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
103743 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
103766 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
103789 ATAT
1 ATAT
103793 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:103817 original size:46 final size:45
Alignment explanation
Indices: 103720--103817 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
103710 ATAGGTAAAA
* * *
103720 ATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATATATATCCTTT
* *
103766 ATATAATGTAATAGGTAGTGGTTATAT-TGTAAAGTATATATCCTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TATATATCCTTT
*
103812 TTATAA
1 ATATAA
103818 AAGCGTCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.43
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATATATATCCTTT
Found at i:104181 original size:23 final size:23
Alignment explanation
Indices: 104150--104222 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
104140 ATAGGTAAAA
*
104150 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
104173 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
104196 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
104219 ATAT
1 ATAT
104223 TGTAAAATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:104317 original size:430 final size:431
Alignment explanation
Indices: 103518--106303 Score: 5080
Period size: 431 Copynumber: 6.5 Consensus size: 431
103508 GTTAATGTTG
* * *
103518 TTAAATT-TAAATTCTAAATATTATTTTATAAATTATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
103582 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTGTT-AAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
103646 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGAACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
* *
103711 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
* *
103776 ATAGGTAGTGGTTATATTGTAAAGTATATATCCTTTTTATAAAAGCGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
* *
103841 TGGAAAACATTAATTTAAGGTTATCCTTTAAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
*
103906 CGTCTAATGATTTATTTTTTACGTTACTATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
103947 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
104012 AT-AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
104076 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
*
104141 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
* * *
104206 ATAGGTAGTGGTTATATTGTAAAATATCTATCATTTTTATAAAAGTTTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
104271 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
* *
104336 CGTCTAATGATTTATTTTTTATGTTATGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
104377 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
104442 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
104506 AAATTACATAACTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
131 AAATTACATAAC-TTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
*
104571 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
195 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGT
*
104636 AATAGGTAGTGGTTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
260 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
104701 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
325 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
104766 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
390 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
104808 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
104873 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
104938 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
105003 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
*
105068 ATAGGTAGTGGTTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
105133 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
* * *
105198 TGTCTAATGATTTATTTTTTATGTTAAGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
105239 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
105304 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTAATAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
105369 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
*
105434 TAGGTAAAAATATGGTGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
* *
105499 ATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTTCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
105564 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAATAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
105629 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAA
391 CGTCTAATGATTTATTTTTTACGTTACG--ATATA-TATTATT--A
*
105675 TTAAAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGC
1 TT--AAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGC
*
105740 AAATGAAATTATTAAATTAATATTGTAGGTAGAAAACATGAAACACTATT--AAAAAATTGAAAC
64 AAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAAC
105803 ATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTTATAAAAAGTATGGACACTTTCAATA
129 ATAAATTACATAACTTTAAAAGAAGTATCGATCC-TTTTTATAAAAAGTATGGACACTTTCAATA
*
105868 TAATAGATAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAAT
193 TAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAAT
*
105933 GTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCA
258 GTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCA
105998 CTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
323 CTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
106063 AGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
388 AGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
* *
106107 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
106172 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
* * *
106237 AAATTACATAACTTTAAAAGATGTATCGATCATTTTTATAAAAAGTATGGACACTTTTAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
106302 TA
196 TA
106304 TAATGTAATA
Statistics
Matches: 2289, Mismatches: 53, Indels: 28
0.97 0.02 0.01
Matches are distributed among these distances:
429 51 0.02
430 564 0.25
431 1164 0.51
432 76 0.03
433 5 0.00
434 14 0.01
435 5 0.00
436 50 0.02
437 252 0.11
438 108 0.05
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (431 bp):
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:104612 original size:23 final size:23
Alignment explanation
Indices: 104581--104653 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
104571 ATAGGTAAAA
*
104581 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
104604 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
104627 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
104650 ATAT
1 ATAT
104654 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:105043 original size:23 final size:23
Alignment explanation
Indices: 105012--105084 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
105002 ATAGGTAAAA
*
105012 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
105035 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
105058 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
105081 ATAT
1 ATAT
105085 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:105475 original size:23 final size:23
Alignment explanation
Indices: 105449--105515 Score: 116
Period size: 23 Copynumber: 2.9 Consensus size: 23
105439 AAAAATATGG
105449 TGTAATAGGTAGCGCTTATATAA
1 TGTAATAGGTAGCGCTTATATAA
*
105472 TGTAATAGGTAGCGTTTATATAA
1 TGTAATAGGTAGCGCTTATATAA
*
105495 TGTAATAGGTAGTGCTTATAT
1 TGTAATAGGTAGCGCTTATAT
105516 TGTAAAGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (23 bp):
TGTAATAGGTAGCGCTTATATAA
Found at i:105911 original size:23 final size:23
Alignment explanation
Indices: 105880--105952 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
105870 ATAGATAAAA
*
105880 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
105903 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
105926 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
105949 ATAT
1 ATAT
105953 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:113637 original size:20 final size:20
Alignment explanation
Indices: 113612--113650 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
113602 GAGGATTAAG
**
113612 AACCGATTTTTAGGTCTTCT
1 AACCGATTTACAGGTCTTCT
113632 AACCGATTTACAGGTCTTC
1 AACCGATTTACAGGTCTTC
113651 CAAACAAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (20 bp):
AACCGATTTACAGGTCTTCT
Found at i:114849 original size:60 final size:60
Alignment explanation
Indices: 114778--114910 Score: 139
Period size: 60 Copynumber: 2.2 Consensus size: 60
114768 TTTAGGGGCA
* * * **
114778 AATTTAGAATGAG-AGACATAGTTT-GAGGATGATATTAGAATTTTAAAA-AGTTTA-AGGACT
1 AATTTAAAATGAGTA-ACATACTTTAG-GGATGAAATTAGAATAATAAAATA-TTTAGA-GACT
* *
114838 AATTTAAAATGAGTATCATACTTTAGGGATGAAATTAGAATAATAAAATATTTAGAGATT
1 AATTTAAAATGAGTAACATACTTTAGGGATGAAATTAGAATAATAAAATATTTAGAGACT
114898 AATTTAAAATGAG
1 AATTTAAAATGAG
114911 GGTTATAGTT
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
60 58 0.94
61 4 0.06
ACGTcount: A:0.45, C:0.03, G:0.18, T:0.34
Consensus pattern (60 bp):
AATTTAAAATGAGTAACATACTTTAGGGATGAAATTAGAATAATAAAATATTTAGAGACT
Found at i:118102 original size:15 final size:16
Alignment explanation
Indices: 118082--118111 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
118072 AAGTAAATTC
118082 GTTTTAA-TTAATATA
1 GTTTTAAGTTAATATA
118097 GTTTTAAGTTAATAT
1 GTTTTAAGTTAATAT
118112 CATTTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (16 bp):
GTTTTAAGTTAATATA
Found at i:120761 original size:22 final size:22
Alignment explanation
Indices: 120736--120777 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
120726 ATTTATTAAT
120736 ATGGATTGATTTATTATAAAAC
1 ATGGATTGATTTATTATAAAAC
*
120758 ATGGATTGATTTATTTTAAA
1 ATGGATTGATTTATTATAAA
120778 TAATTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.45
Consensus pattern (22 bp):
ATGGATTGATTTATTATAAAAC
Found at i:120818 original size:22 final size:22
Alignment explanation
Indices: 120793--120848 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
120783 TATTAGTATA
120793 GATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAAATATG
*
120815 GATTGATTTATTTTAAAATATT
1 GATTGATTTATTTTAAAATATG
120837 GATTGATTTATT
1 GATTGATTTATT
120849 ATTGTAGTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (22 bp):
GATTGATTTATTTTAAAATATG
Found at i:120827 original size:26 final size:26
Alignment explanation
Indices: 120793--120875 Score: 68
Period size: 22 Copynumber: 3.3 Consensus size: 26
120783 TATTAGTATA
*
120793 GATTGATTTATTTTAAAATATGGATT
1 GATTTATTTATTTTAAAATATGGATT
*
120819 G----ATTTATTTTAAAATATTGATT
1 GATTTATTTATTTTAAAATATGGATT
* ***
120841 GATTTA-TTATTGTAGTTGTATGGATT
1 GATTTATTTATTTTA-AAATATGGATT
120867 GATTTATTT
1 GATTTATTT
120876 TAAATAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
22 21 0.47
25 7 0.16
26 15 0.33
27 2 0.04
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (26 bp):
GATTTATTTATTTTAAAATATGGATT
Found at i:120891 original size:102 final size:101
Alignment explanation
Indices: 120758--121345 Score: 448
Period size: 102 Copynumber: 5.7 Consensus size: 101
120748 ATTATAAAAC
*
120758 ATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATT
1 ATGGATTGATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTTAAAATATGGATTGATT
120823 TATTTTAAAATATTGATTGATTTATTATTGTAGTTGT
66 TATTTTAAAATATTGATTGATTTATTATTGTA-TTGT
* * *
120860 ATGGATTGATTTATTTTAAATAATTTATTAGTATCGATTGAATTATTTTAAAATATAGATTGATT
1 ATGGATTGATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTTAAAATATGGATTGATT
**
120925 TATTTTAAAATATT--TT-A-TTA-TA----A-AAT
66 TATTTTAAAATATTGATTGATTTATTATTGTATTGT
* ***
120951 ATGGATTGATTTATTTTAAAATAATTTATTAATATTGATTGATTTATTATTGTAGTTGTATGGAT
1 ATGGATTGATTTATTTT-AAATAATTTATTAGTATTGATTGATTTA-T-TT-TA-AAATATGGAT
* * ***
121016 TGATTTATTTTAAATAATTTATT-AGTATGAATTGATTTATTTTAAAAT
61 TGATTTATTTT-AA-AA--TATTGA-T-TG-ATTTA-TTATTGTATTGT
* * ***
121064 ATGGATTGATTTATTTT-AA-AA--TATT-G-ATTGATTTA-TTATTGTAGTTGTATGGATTGAT
1 ATGGATTGATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTTA-AAATATGGATTGAT
* *
121122 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGT
65 TTATTTTAAAATATTGATTGATTTA--TT--AT--TGTATT-GT
* * * * * * *
121166 ATGAATTGATTTATTATT--GTAGTTGTA-T-GGATTGATTTATTTTAAATAATTTATTAGTATG
1 ATGGATTGATTTATT-TTAAATAATT-TATTAGTATTGATTGA-TTT--AT--TTTA-AAATATG
* *
121227 AATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGT
58 GATTGATTTATTTTAAAATATTGATTGATTTATTATTGTA-TTGT
121272 ATGGATTGATTTATTTTAAATAATTTATTAGTA-TGAATTGATTTATTTTAAAATATGGATTGAT
1 ATGGATTGATTTATTTTAAATAATTTATTAGTATTG-ATTGATTTATTTTAAAATATGGATTGAT
121336 TTATTTTAAA
65 TTATTTTAAA
121346 TAATTTATTA
Statistics
Matches: 402, Mismatches: 37, Indels: 94
0.75 0.07 0.18
Matches are distributed among these distances:
91 18 0.04
92 25 0.06
93 2 0.00
94 2 0.00
95 2 0.00
96 21 0.05
97 9 0.02
98 9 0.02
99 4 0.01
100 8 0.02
101 6 0.01
102 137 0.34
103 9 0.02
104 1 0.00
105 10 0.02
106 42 0.10
107 12 0.03
108 16 0.04
110 6 0.01
111 2 0.00
112 41 0.10
113 20 0.05
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.52
Consensus pattern (101 bp):
ATGGATTGATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTTAAAATATGGATTGATT
TATTTTAAAATATTGATTGATTTATTATTGTATTGT
Found at i:120908 original size:80 final size:79
Alignment explanation
Indices: 120708--121340 Score: 495
Period size: 80 Copynumber: 7.8 Consensus size: 79
120698 AACATTAGGC
* * *
120708 TTGATTTATTTTAAAATAATTTATTAATATGGATTGATTTATTATAAAACATGGATTGATTTATT
1 TTGATTTATTTT-AAATAATTTATTAGTAT-GATTGATTTATTTTAAAATATGGATTGATTTA--
* *
120773 TTAAATAATTTA-TTAGTATAGA
62 TT--AT--TGTAGTT-GTATGGA
*
120795 TTGATTTATTTT-AA-AA--TA-T-G---GATTGATTTATTTTAAAATATTGATTGATTTATTAT
1 TTGATTTATTTTAAATAATTTATTAGTATGATTGATTTATTTTAAAATATGGATTGATTTATTAT
120851 TGTAGTTGTATGGA
66 TGTAGTTGTATGGA
* *
120865 TTGATTTATTTTAAATAATTTATTAGTATCGATTGAATTATTTTAAAATATAGATTGATTTATTT
1 TTGATTTATTTTAAATAATTTATTAGTAT-GATTGATTTATTTTAAAATATGGATTGATTTA---
* * *
120930 TAAAATATTTTATTATAAAATATGGA
62 T----TATTGTAGT-T---GTATGGA
* ***
120956 TTGATTTATTTTAAAATAATTTATTAATATTGATTGATTTATTATTGTAGTTGTATGGATTGATT
1 TTGATTTATTTT-AAATAATTTATTAGTA-TGATTGATTTA-T-TT-TA-AAATATGGATTGATT
* *
121021 TATTTTAAATAATTTA-TTAGTATGAA
60 TA--TT--AT--TGTAGTT-GTATGGA
*
121047 TTGATTTATTTT-AA-AA--TA-T-G---GATTGATTTATTTTAAAATATTGATTGATTTATTAT
1 TTGATTTATTTTAAATAATTTATTAGTATGATTGATTTATTTTAAAATATGGATTGATTTATTAT
121103 TGTAGTTGTATGGA
66 TGTAGTTGTATGGA
* * ** * * * *
121117 TTGATTTATTTTAAAATATGGATTGATT--TAT--TTTAAATAATTTATTAGTATGAATTGATTT
1 TTGATTTATTTT-AAATA---ATTTATTAGTATGATTGATTTATTTTA-AAATATGGATTGATTT
121178 ATTATTGTAGTTGTATGGA
61 ATTATTGTAGTTGTATGGA
121197 TTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTA
1 TTGATTTATTTTAAATAATTTATTAGTATG-ATTGATTTATTTTAAAATATGGATTGATTTATTA
121262 TTGTAGTTGTATGGA
65 TTGTAGTTGTATGGA
121277 TTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATT
1 TTGATTTATTTTAAATAATTTATTAGTATG-ATTGATTTATTTTAAAATATGGATTGATTTATT
121341 TTAAATAATT
Statistics
Matches: 452, Mismatches: 43, Indels: 109
0.75 0.07 0.18
Matches are distributed among these distances:
70 42 0.09
71 6 0.01
72 8 0.02
73 1 0.00
74 6 0.01
75 1 0.00
76 50 0.11
77 2 0.00
78 6 0.01
79 16 0.04
80 179 0.40
81 10 0.02
82 2 0.00
83 1 0.00
84 2 0.00
85 3 0.01
86 2 0.00
87 19 0.04
88 3 0.01
89 2 0.00
91 37 0.08
92 24 0.05
93 5 0.01
94 3 0.01
95 9 0.02
96 13 0.03
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (79 bp):
TTGATTTATTTTAAATAATTTATTAGTATGATTGATTTATTTTAAAATATGGATTGATTTATTAT
TGTAGTTGTATGGA
Found at i:120920 original size:22 final size:22
Alignment explanation
Indices: 120895--120937 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
120885 TATTAGTATC
120895 GATTGAATTATTTTAAAATATA
1 GATTGAATTATTTTAAAATATA
*
120917 GATTGATTTATTTTAAAATAT
1 GATTGAATTATTTTAAAATAT
120938 TTTATTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (22 bp):
GATTGAATTATTTTAAAATATA
Found at i:120943 original size:15 final size:15
Alignment explanation
Indices: 120923--120952 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
120913 TATAGATTGA
*
120923 TTTATTTTAAAATAT
1 TTTATTATAAAATAT
120938 TTTATTATAAAATAT
1 TTTATTATAAAATAT
120953 GGATTGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTATTATAAAATAT
Found at i:120951 original size:37 final size:37
Alignment explanation
Indices: 120902--120981 Score: 133
Period size: 37 Copynumber: 2.2 Consensus size: 37
120892 ATCGATTGAA
* *
120902 TTATTTTAAAATATAGATTGATTTATTTTAAAATATT
1 TTATTATAAAATATAGATTGATTTATTTTAAAATAAT
*
120939 TTATTATAAAATATGGATTGATTTATTTTAAAATAAT
1 TTATTATAAAATATAGATTGATTTATTTTAAAATAAT
120976 TTATTA
1 TTATTA
120982 ATATTGATTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (37 bp):
TTATTATAAAATATAGATTGATTTATTTTAAAATAAT
Found at i:121031 original size:150 final size:151
Alignment explanation
Indices: 120708--121260 Score: 591
Period size: 150 Copynumber: 3.4 Consensus size: 151
120698 AACATTAGGC
* * *
120708 TTGATTTATTTTAAAATAATTTATTAATATGGATTGATTTATTATAAAACATGGATTGATTTATT
1 TTGATTTATTTT-AAATAATTTATTAGTAT-GATTGATTTATTTTAAAATATGGATTGATTTATT
*
120773 TT-AAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAATATT
64 TTAAAATATTTTATTAGTATAGATTGATTTATTTTAAAATAT-GA-T-ATTTA-TTT-AAATATT
120837 GATTGATTTATTATTGTAGTTGTATGGA
124 GATTGATTTATTATTGTAGTTGTATGGA
* *
120865 TTGATTTATTTTAAATAATTTATTAGTATCGATTGAATTATTTTAAAATATAGATTGATTTATTT
1 TTGATTTATTTTAAATAATTTATTAGTAT-GATTGATTTATTTTAAAATATGGATTGATTTATTT
120930 TAAAATATTTTATTA-TAAAATATGGATTGATTTATTTT-AAA-AT-A-ATTTA-TT-AATATTG
65 TAAAATATTTTATTAGT---ATA--GATTGATTTATTTTAAAATATGATATTTATTTAAATATTG
120988 ATTGATTTATTATTGTAGTTGTATGGA
125 ATTGATTTATTATTGTAGTTGTATGGA
121015 TTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTT
1 TTGATTTATTTTAAATAATTTATTAGTATG-ATTGATTTATTTTAAAATATGGATTGATTTATTT
121080 TAAAATATTGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAAATATGGATTGATT
65 T-AAA-A-T-A-T--TTTATTA--GTA----TA--GATTGATTTATTTTAAAATAT-GA-T-ATT
121145 TATTTTAAATAATTTATTAGTATGAATTGATTTATTATTGTAGTTGTATGGA
112 TA--TT---TAA---A-TA-T-TG-ATTGATTTATTATTGTAGTTGTATGGA
121197 TTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATT
1 TTGATTTATTTTAAATAATTTATTAGTATG-ATTGATTTATTTTAAAATATGGATTGATTTATT
121261 ATTGTAGTTG
Statistics
Matches: 345, Mismatches: 9, Indels: 59
0.84 0.02 0.14
Matches are distributed among these distances:
149 1 0.00
150 96 0.28
151 3 0.01
152 3 0.01
153 1 0.00
154 6 0.02
155 1 0.00
156 49 0.14
157 33 0.10
159 5 0.01
160 4 0.01
161 32 0.09
162 3 0.01
163 2 0.01
165 1 0.00
168 5 0.01
171 1 0.00
174 1 0.00
175 1 0.00
178 1 0.00
179 2 0.01
180 1 0.00
181 2 0.01
182 91 0.26
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.52
Consensus pattern (151 bp):
TTGATTTATTTTAAATAATTTATTAGTATGATTGATTTATTTTAAAATATGGATTGATTTATTTT
AAAATATTTTATTAGTATAGATTGATTTATTTTAAAATATGATATTTATTTAAATATTGATTGAT
TTATTATTGTAGTTGTATGGA
Found at i:121066 original size:22 final size:22
Alignment explanation
Indices: 121041--121153 Score: 145
Period size: 22 Copynumber: 5.0 Consensus size: 22
121031 AATTTATTAG
*
121041 TATGAATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
121063 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
* ***
121085 TATTGATTGATTTATTATTGTAGTTG
1 TATGGATTGATTTA-T-TT-TA-AAA
121111 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
121133 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
121154 TAATTTATTA
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
22 55 0.71
23 3 0.04
24 4 0.05
25 3 0.04
26 13 0.17
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:121160 original size:182 final size:189
Alignment explanation
Indices: 120938--121355 Score: 647
Period size: 182 Copynumber: 2.2 Consensus size: 189
120928 TTTAAAATAT
*
120938 TTTATTATAAAATATGGATTGATTTATTTTAAAATAATTTATTAATATTG-ATTGATTTATTATT
1 TTTATTTTAAAATATGGATTGATTTATTTT-AAATAATTTATTAATA-TGAATTGATTTATTATT
121002 GTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATG
64 GTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATG
* *
121067 GATTGATTTA-T-TT-TA-AAATATTGATTGATTTA-TT-AT-TGTAGTT-GTATGGATTGA
129 GATTGATTTATTATTGTAGAAATATGGATTGATTTATTTAATATGTA-TTAGTATGAATTGA
*
121121 TTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTATTGT
1 TTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAATATGAATTGATTTATTATTGT
121186 AGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGA
66 AGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGA
*** *
121251 TTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGA
131 TTGATTTATTATTGTAGAAATATGGATTGATTTA-TTT-AAT-ATGTATTAGTATGAATTGA
121313 TTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
1 TTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
121356 TTGTATTTGT
Statistics
Matches: 215, Mismatches: 8, Indels: 15
0.90 0.03 0.06
Matches are distributed among these distances:
181 2 0.01
182 104 0.48
183 30 0.14
184 2 0.01
185 2 0.01
186 13 0.06
188 2 0.01
190 2 0.01
191 2 0.01
192 56 0.26
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (189 bp):
TTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAATATGAATTGATTTATTATTGT
AGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGA
TTGATTTATTATTGTAGAAATATGGATTGATTTATTTAATATGTATTAGTATGAATTGA
Found at i:121176 original size:32 final size:32
Alignment explanation
Indices: 121133--121243 Score: 137
Period size: 32 Copynumber: 3.7 Consensus size: 32
121123 TATTTTAAAA
*
121133 TATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGAATTGATTTATTTTAAATAATTTATTAG
*
121165 TATGAATTGATTTA--TT--AT--TGTAGTT-G
1 TATGAATTGATTTATTTTAAATAATTTA-TTAG
*
121191 TATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGAATTGATTTATTTTAAATAATTTATTAG
121223 TATGAATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
121244 ATATGGATTG
Statistics
Matches: 66, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
26 17 0.26
27 2 0.03
28 4 0.06
30 4 0.06
31 2 0.03
32 37 0.56
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (32 bp):
TATGAATTGATTTATTTTAAATAATTTATTAG
Found at i:121176 original size:252 final size:248
Alignment explanation
Indices: 120708--121260 Score: 717
Period size: 252 Copynumber: 2.3 Consensus size: 248
120698 AACATTAGGC
120708 TTGATTTATTTTAAAATAATTTATTAATATGGATTGATTTATTATAAAACATGGATTGATTTATT
1 TTGATTTATTTTAAAATAATTTATTAATATGGATTGATTTATTATAAAACATGGATTGATTTATT
120773 TTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAATATTG
66 TTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAATATTG
** *
120838 ATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATCGATTGAAT
131 ATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATGGATTAGTATCGATTGAAA
*
120903 TATTTTAAAATATAGATTGATTTATTTTAAAATATTTTATTATAAAATATGGA
196 TAATTTAAAATATAGATTGATTTATTTTAAAATATTTTATTATAAAATATGGA
* ****
120956 TTGATTTATTTTAAAATAATTTATTAATATTGATTGATTTATTATTGTAGTTGTATGGATTGATT
1 TTGATTTATTTTAAAATAATTTATTAATATGGATTGATTTATTA---TA-AAACATGGATTGATT
121021 TATTTTAAATAATTTATTAGTAT-GAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAA
62 TATTTTAAATAATTTATTAGTATAG-ATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAA
**
121085 TATTGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAA-ATATGGATT-G-ATTTA
126 TATTGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATA-ATGGATTAGTATCGA
* * * * * *
121147 TTTTAAATAATTT---AT-TAG-TATGAATTGA-TTT--ATTATTGTAGT-T---GTATGGA
190 -TTGAAATAATTTAAAATATAGAT-TG-ATTTATTTTAAAATATTTTATTATAAAATATGGA
* * * *
121197 TTGATTTATTTT-AAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATT
1 TTGATTTATTTTAAAATAATTTATTAATATGGATTGATTTATTATAAAACATGGATTGATTTATT
121261 ATTGTAGTTG
Statistics
Matches: 272, Mismatches: 24, Indels: 30
0.83 0.07 0.09
Matches are distributed among these distances:
236 16 0.06
237 2 0.01
240 27 0.10
241 18 0.07
244 1 0.00
245 8 0.03
246 1 0.00
247 8 0.03
248 49 0.18
250 3 0.01
251 14 0.05
252 125 0.46
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.52
Consensus pattern (248 bp):
TTGATTTATTTTAAAATAATTTATTAATATGGATTGATTTATTATAAAACATGGATTGATTTATT
TTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAATATTG
ATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATGGATTAGTATCGATTGAAA
TAATTTAAAATATAGATTGATTTATTTTAAAATATTTTATTATAAAATATGGA
Found at i:121193 original size:26 final size:25
Alignment explanation
Indices: 121159--121286 Score: 91
Period size: 26 Copynumber: 4.8 Consensus size: 25
121149 TTAAATAATT
*
121159 TATTAGTATGAATTGATTTATTATTG
1 TATT-GTATGGATTGATTTATTATTG
*
121185 TAGTTGTATGGATTGATTTATTTTAAATAATT
1 TA-TTGTATGGATTGATTTA--TT--AT--TG
*
121217 TATTAGTATGAATTGATTTA-T-TT-
1 TATT-GTATGGATTGATTTATTATTG
***
121240 TAAAATATGGATTGATTTATTATTG
1 TATTGTATGGATTGATTTATTATTG
121265 TAGTTGTATGGATTGATTTATT
1 TA-TTGTATGGATTGATTTATT
121287 TTAAATAATT
Statistics
Matches: 80, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
22 13 0.16
23 3 0.04
24 3 0.04
25 2 0.03
26 33 0.41
27 2 0.03
28 2 0.03
29 1 0.01
30 2 0.03
31 2 0.03
32 17 0.21
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.53
Consensus pattern (25 bp):
TATTGTATGGATTGATTTATTATTG
Found at i:121328 original size:22 final size:22
Alignment explanation
Indices: 121303--121345 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
121293 AATTTATTAG
121303 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
121325 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
121346 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:121405 original size:31 final size:31
Alignment explanation
Indices: 121370--121428 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
121360 ATTTGTATGG
*
121370 ATTATTTAAAT-TTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTT-AGTATTGCAAAACTAAA
121401 ATTATTTAAATCTTAGTATTGCAAAACT
1 ATTATTTAAATCTTAGTATTGCAAAACT
121429 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATCTTAGTATTGCAAAACTAAA
Found at i:124252 original size:12 final size:12
Alignment explanation
Indices: 124218--124259 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
124208 GTAGTGATTT
124218 TTTTATTTTTAA
1 TTTTATTTTTAA
* *
124230 TTATATATTTAA
1 TTTTATTTTTAA
124242 TTTTATTTTTAGA
1 TTTTATTTTTA-A
124255 TTTTA
1 TTTTA
124260 GATTTTAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
12 19 0.76
13 6 0.24
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTTATTTTTAA
Found at i:128319 original size:18 final size:19
Alignment explanation
Indices: 128271--128319 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
128261 TTGGACTCCT
*
128271 AGTGCATCGGTGCACTAAG
1 AGTGCATCGATGCACTAAG
128290 AGTGCATCGATGCA-TAA-
1 AGTGCATCGATGCACTAAG
128307 AGTGCATTCGATG
1 AGTGCA-TCGATG
128320 TTTGAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 6 0.21
18 9 0.32
19 13 0.46
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (19 bp):
AGTGCATCGATGCACTAAG
Found at i:128404 original size:64 final size:64
Alignment explanation
Indices: 128291--128499 Score: 183
Period size: 64 Copynumber: 3.2 Consensus size: 64
128281 TGCACTAAGA
* ***
128291 GTGCATCGATGCAT-AAAGTGCATTCGATGTTTGAA--AAATAGCTTGGTGCATCGATGCATGGA
1 GTGCATCGATGCATCAAA-TGCATTCGATGTTTCAATTAAAT--CAAAGTGCATCGATGCATGGA
128353 TT
63 TT
* * **
128355 GTGCATCGATGCATCAAATGGATTCGATGTTTTAATTAAATCAAAGTGCATCGATGCATGGAGA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATTAAATCAAAGTGCATCGATGCATGGATT
** * * ** *
128419 GTGCATC-AGTGCATGGAATGCATTCGATGTTTCAATTTATTCATTGATGCATTGATGCATGGTA
1 GTGCATCGA-TGCATCAAATGCATTCGATGTTTCAATTAAATCAAAG-TGCATCGATGCATGG-A
128483 TT
63 TT
*
128485 GATGCATCGGTGCAT
1 G-TGCATCGATGCAT
128500 GCCTTTGAAA
Statistics
Matches: 118, Mismatches: 19, Indels: 13
0.79 0.13 0.09
Matches are distributed among these distances:
63 1 0.01
64 83 0.70
65 17 0.14
66 6 0.05
67 11 0.09
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAATTAAATCAAAGTGCATCGATGCATGGATT
Found at i:128423 original size:19 final size:18
Alignment explanation
Indices: 128398--128447 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
128388 AATTAAATCA
128398 AAGTGCATCGATGCATGG
1 AAGTGCATCGATGCATGG
128416 AGAGTGCATC-AGTGCATGG
1 A-AGTGCATCGA-TGCATGG
128435 AA-TGCATTCGATG
1 AAGTGCA-TCGATG
128448 TTTCAATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 4 0.14
18 7 0.25
19 17 0.61
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (18 bp):
AAGTGCATCGATGCATGG
Found at i:128485 original size:21 final size:21
Alignment explanation
Indices: 128461--128500 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
128451 CAATTTATTC
*
128461 ATTGATGCATTGATGCATGGT
1 ATTGATGCATCGATGCATGGT
*
128482 ATTGATGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
128501 CCTTTGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.12, G:0.30, T:0.35
Consensus pattern (21 bp):
ATTGATGCATCGATGCATGGT
Found at i:131085 original size:24 final size:23
Alignment explanation
Indices: 131014--131093 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 23
131004 CATGATCTTG
131014 TGCATCGATGCACATTCAAGGCG-
1 TGCATCGATGCACATTCAAGG-GA
* *
131037 TGCATCGGTG--CA-TCATGCGGA
1 TGCATCGATGCACATTCAAG-GGA
131058 TGCATCGATGCACATTCAAAGGGA
1 TGCATCGATGCACATTC-AAGGGA
131082 TGCATCGATGCA
1 TGCATCGATGCA
131094 TTGTTAAGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
20 5 0.11
21 12 0.26
23 11 0.23
24 17 0.36
25 2 0.04
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (23 bp):
TGCATCGATGCACATTCAAGGGA
Found at i:131106 original size:44 final size:44
Alignment explanation
Indices: 131013--131113 Score: 109
Period size: 44 Copynumber: 2.3 Consensus size: 44
131003 GCATGATCTT
* *
131013 GTGCATCGATGCACATTCAAGGCGTGCATCGGTGCATCATGCGGA
1 GTGCATCGATGCACATTCAAGGCGTGCATCGATGCAT-ATGCGAA
**
131058 -TGCATCGATGCACATTCAAAGG-GATGCATCGATGCAT-TGTTAA
1 GTGCATCGATGCACATTC-AAGGCG-TGCATCGATGCATATGCGAA
*
131101 GTGCATCGGTGCA
1 GTGCATCGATGCA
131114 TTAAGCACAA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.06
44 29 0.60
45 16 0.33
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (44 bp):
GTGCATCGATGCACATTCAAGGCGTGCATCGATGCATATGCGAA
Found at i:136931 original size:18 final size:17
Alignment explanation
Indices: 136877--136925 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
136867 TTGGACTCTT
* *
136877 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TGA
136895 GAGTGCATCGATGCATGA
1 -AGTGCATCGATGCATGA
136913 AGTGCATTCGATG
1 AGTGCA-TCGATG
136926 TTTGAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATGA
Found at i:136965 original size:64 final size:62
Alignment explanation
Indices: 136877--137056 Score: 186
Period size: 64 Copynumber: 2.8 Consensus size: 62
136867 TTGGACTCTT
* *
136877 AGTGCATCGGTGCACT-AAGAGTGCATCGATGCATGAAGTGCATTCGATGTTTGAA-AAAT-AG
1 AGTGCATCGATGCA-TGGAGAGTGCATCGATGCATGAA-TGCATTCGATGTTTGAATAAATCAG
* ** * *
136938 CCTGGTGCATCGATGCATGGATTGTGCATCGATGCATCAAATGCATTCGATGTTTTAATTAAATC
1 ---AGTGCATCGATGCATGGAGAGTGCATCGATGCAT-GAATGCATTCGATGTTTGAA-TAAATC
137003 AG
61 AG
* *
137005 AGTGCATCGATGTATGGAGAGTGCATCGGTGCATGGAATGCATTCGATGTTT
1 AGTGCATCGATGCATGGAGAGTGCATCGATGCAT-GAATGCATTCGATGTTT
137057 CAATTTATTC
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
63 1 0.01
64 88 0.91
65 2 0.02
66 4 0.04
67 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (62 bp):
AGTGCATCGATGCATGGAGAGTGCATCGATGCATGAATGCATTCGATGTTTGAATAAATCAG
Found at i:137027 original size:19 final size:19
Alignment explanation
Indices: 137003--137054 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
136993 TAATTAAATC
137003 AGAGTGCATCGATGTATGG
1 AGAGTGCATCGATGTATGG
* *
137022 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGTATGG
137041 A-A-TGCATTCGATGT
1 AGAGTGCA-TCGATGT
137055 TTCAATTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 18 0.64
ACGTcount: A:0.25, C:0.13, G:0.35, T:0.27
Consensus pattern (19 bp):
AGAGTGCATCGATGTATGG
Found at i:137091 original size:21 final size:21
Alignment explanation
Indices: 137067--137106 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
137057 CAATTTATTC
137067 ATTGATGCATCGATGCATGGT
1 ATTGATGCATCGATGCATGGT
*
137088 ATTGATGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
137107 CCTTTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (21 bp):
ATTGATGCATCGATGCATGGT
Found at i:139845 original size:61 final size:63
Alignment explanation
Indices: 139727--139848 Score: 153
Period size: 61 Copynumber: 2.0 Consensus size: 63
139717 CTAATGTGAC
*
139727 TCTTAGGTAGCCTCTTCGGCCCTGATATCATTATCGGGTAGGCCCTGCGGCCCTAAGATGTGT
1 TCTTAGGTAGCCTCGTCGGCCCTGATATCATTATCGGGTAGGCCCTGCGGCCCTAAGATGTGT
* * * *
139790 TCTTAGGTAGGCCTCGT-GGCCCTGA-A-CTTTCTTGGGTAGGCTCT-CAGGCCCTAAGATGT
1 TCTTAGGTA-GCCTCGTCGGCCCTGATATCATTATCGGGTAGGCCCTGC-GGCCCTAAGATGT
139849 TCCCTTAGGT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
60 1 0.02
61 27 0.52
62 1 0.02
63 17 0.33
64 6 0.12
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.30
Consensus pattern (63 bp):
TCTTAGGTAGCCTCGTCGGCCCTGATATCATTATCGGGTAGGCCCTGCGGCCCTAAGATGTGT
Found at i:141800 original size:14 final size:14
Alignment explanation
Indices: 141781--141808 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
141771 GAATCCTTAG
141781 TGCATATATTAGTT
1 TGCATATATTAGTT
141795 TGCATATATTAGTT
1 TGCATATATTAGTT
141809 GTGAATCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (14 bp):
TGCATATATTAGTT
Found at i:141837 original size:33 final size:33
Alignment explanation
Indices: 141795--141950 Score: 258
Period size: 33 Copynumber: 4.7 Consensus size: 33
141785 TATATTAGTT
141795 TGCATATATTAGTTGTGAATCCTTCAGCATTGG
1 TGCATATATTAGTTGTGAATCCTTCAGCATTGG
141828 TGCATATATTAGTTGTGAATCCTTCAGCATTGG
1 TGCATATATTAGTTGTGAATCCTTCAGCATTGG
* *
141861 TGCATATATTAGTTGTGAATCCTTCATCATAGG
1 TGCATATATTAGTTGTGAATCCTTCAGCATTGG
* * *
141894 TGCATACATTAATTGTGAATCCTTCAGCATTGA
1 TGCATATATTAGTTGTGAATCCTTCAGCATTGG
*
141927 TGTATATATTAGTTGTGAATCCTT
1 TGCATATATTAGTTGTGAATCCTT
141951 TGAAGCTTAA
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 113 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (33 bp):
TGCATATATTAGTTGTGAATCCTTCAGCATTGG
Found at i:141944 original size:99 final size:105
Alignment explanation
Indices: 141732--141950 Score: 315
Period size: 99 Copynumber: 2.1 Consensus size: 105
141722 TAGCATGAGA
* * *
141732 AGTTATGAATCCTTCAGCATTGGTGCATATATTAATTGTGAATCCTTAGTGCATATATTAGTTTG
1 AGTTGTGAATCCTTCAGCATTGGTGCATATATTAATTGTGAATCCTTA-TGCATACATTAGTGTG
* * *
141797 CATATATTAGTTGTGAATCCTTCAGCATTGGTGCATATATT
65 CATACATTAATTGTGAATCCTTCAGCATTGATGCATATATT
*
141838 AGTTGTGAATCCTTCAGCATTGGTGCATATATTAGTTGTGAATCC-T-T-CAT-CA-TAG-GTGC
1 AGTTGTGAATCCTTCAGCATTGGTGCATATATTAATTGTGAATCCTTATGCATACATTAGTGTGC
*
141897 ATACATTAATTGTGAATCCTTCAGCATTGATGTATATATT
66 ATACATTAATTGTGAATCCTTCAGCATTGATGCATATATT
141937 AGTTGTGAATCCTT
1 AGTTGTGAATCCTT
141951 TGAAGCTTAA
Statistics
Matches: 105, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
99 53 0.50
100 3 0.03
101 1 0.01
102 3 0.03
103 1 0.01
105 1 0.01
106 43 0.41
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (105 bp):
AGTTGTGAATCCTTCAGCATTGGTGCATATATTAATTGTGAATCCTTATGCATACATTAGTGTGC
ATACATTAATTGTGAATCCTTCAGCATTGATGCATATATT
Found at i:156545 original size:55 final size:55
Alignment explanation
Indices: 156461--156570 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
156451 AAATCAAAAC
156461 TGGAGATTTCTTTTCCCTTCCCCTTCAAGTCTAACAAATTGATCGACCCAACAAA
1 TGGAGATTTCTTTTCCCTTCCCCTTCAAGTCTAACAAATTGATCGACCCAACAAA
156516 TGGAGATTTCTTTTCCCTTCCCCTTCAAGTCTAACAAATTGATCGACCCAACAAA
1 TGGAGATTTCTTTTCCCTTCCCCTTCAAGTCTAACAAATTGATCGACCCAACAAA
156571 AGAAGCATTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (55 bp):
TGGAGATTTCTTTTCCCTTCCCCTTCAAGTCTAACAAATTGATCGACCCAACAAA
Found at i:163282 original size:19 final size:20
Alignment explanation
Indices: 163255--163294 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
163245 TTAATATTTT
163255 ATTTATTTAT-TACATATGTA
1 ATTTATTTATGTACA-ATGTA
163275 ATTT-TTTATGTACAATGTA
1 ATTTATTTATGTACAATGTA
163294 A
1 A
163295 CATTTTAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (20 bp):
ATTTATTTATGTACAATGTA
Found at i:163300 original size:19 final size:19
Alignment explanation
Indices: 163260--163301 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
163250 ATTTTATTTA
**
163260 TTTATTACATATGTAATTT
1 TTTATTACATATGTAACAT
163279 TTTATGTACA-ATGTAACAT
1 TTTAT-TACATATGTAACAT
163298 TTTA
1 TTTA
163302 ACCTGAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (19 bp):
TTTATTACATATGTAACAT
Found at i:167264 original size:37 final size:37
Alignment explanation
Indices: 167223--167296 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
167213 ACTATAAAGT
167223 AAGAATAAATTCTGCTAAGCTTAAAGATTATTTTATA
1 AAGAATAAATTCTGCTAAGCTTAAAGATTATTTTATA
*
167260 AAGAATAAATTTTGCTAAGCTTAAAGATTATTTTATA
1 AAGAATAAATTCTGCTAAGCTTAAAGATTATTTTATA
167297 TTAATTAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (37 bp):
AAGAATAAATTCTGCTAAGCTTAAAGATTATTTTATA
Found at i:168163 original size:14 final size:14
Alignment explanation
Indices: 168125--168175 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
168115 CGATTGAATG
168125 ATAAAAAAAATTCA
1 ATAAAAAAAATTCA
* **
168139 ATATATTAAATTCA
1 ATAAAAAAAATTCA
* *
168153 GTAAAAAAAATTTA
1 ATAAAAAAAATTCA
168167 A-AAAAAAAA
1 ATAAAAAAAA
168176 ACTTAAATTC
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
13 8 0.29
14 20 0.71
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (14 bp):
ATAAAAAAAATTCA
Found at i:174596 original size:22 final size:22
Alignment explanation
Indices: 174570--174618 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
174560 CATCCGTTAA
*
174570 AAACTTAAC-GTGTTTAGTACTT
1 AAACTTAACAGT-TTTAGTACCT
*
174592 AAAC-TATCAGTTTTAGTACCT
1 AAACTTAACAGTTTTAGTACCT
174613 AAACTT
1 AAACTT
174619 TCGAGATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (22 bp):
AAACTTAACAGTTTTAGTACCT
Found at i:176505 original size:20 final size:20
Alignment explanation
Indices: 176482--176532 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
176472 ATTTTCCGAC
176482 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATATGTAAA
176502 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATATGTAAA
176522 TCGCAATGCGA
1 TCGCAATGCGA
176533 TTCTGACTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.24
Consensus pattern (20 bp):
TCGCAATGCGAATATGTAAA
Found at i:176544 original size:20 final size:20
Alignment explanation
Indices: 176521--176588 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
176511 GAATATGTAA
*
176521 ATCGCAATGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
176541 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
176561 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
176581 GTCGCAAC
1 ATCGCAAC
176589 ACTGAATTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:176545 original size:40 final size:40
Alignment explanation
Indices: 176501--176588 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
176491 GAATATGTAA
* * *
176501 ATCGCAATGCGAATATGTA-AATCGCAATGCGATTCTGACT
1 ATCGCAACGAGAATATG-ACAATCGCAACGCGATTCTGACT
* * *
176541 ATCGCAACGAGATTCTGACTATCGCAACGCGATTCTGACT
1 ATCGCAACGAGAATATGACAATCGCAACGCGATTCTGACT
*
176581 GTCGCAAC
1 ATCGCAAC
176589 ACTGAATTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.03
40 39 0.98
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (40 bp):
ATCGCAACGAGAATATGACAATCGCAACGCGATTCTGACT
Done.