genome.fa.s6029.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006029.1 Hibiscus syriacus cultivar Beakdansim tig00014233_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116134

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4793--4860	30	2.3	29	82	9	84	51	1	1	45	1.19
4923--4976	23	2.3	24	93	3	92	44	0	7	48	1.31
6871--6997	2	64.5	2	65	20	54	44	4	3	46	1.42
6912--7060	71	2.1	72	92	2	248	43	4	3	48	1.40
7033--7165	44	2.8	46	73	18	123	42	4	6	46	1.48
6913--7092	71	2.5	71	85	6	233	43	5	3	47	1.45
7034--7108	31	2.6	29	87	6	98	44	5	5	45	1.49
7099--7149	18	2.8	18	82	11	68	45	1	5	47	1.38
7424--7481	2	29.0	2	81	6	55	39	3	1	55	1.27
9368--9404	18	2.1	18	100	0	74	48	0	18	32	1.49
18919--18969	20	2.5	20	83	6	57	35	15	29	19	1.93
18937--19143	95	2.2	93	81	6	220	31	14	25	28	1.94
19106--19166	22	2.9	21	81	13	72	31	18	27	22	1.97
19106--19166	21	2.9	20	80	17	70	31	18	27	22	1.97
19507--20104	57	10.5	57	92	0	991	36	11	19	32	1.88
23920--23971	21	2.5	21	96	0	95	34	26	15	23	1.94
24585--25067	57	8.5	57	93	0	806	36	11	18	32	1.88
32024--32063	21	1.9	22	90	10	66	12	10	40	37	1.77
32497--32559	19	3.2	20	85	12	87	50	11	11	26	1.71
36910--36959	19	2.5	20	83	3	66	30	20	24	26	1.98
39167--39228	13	4.6	13	84	6	79	14	25	17	41	1.88
39165--39229	27	2.4	28	92	5	107	13	26	18	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47127--47221	32	2.9	33	92	3	165	25	18	26	29	1.98
47157--47211	16	3.4	17	69	19	53	25	18	25	30	1.98
59144--59348	98	2.1	98	96	0	376	22	12	19	45	1.83
60709--60742	2	17.0	2	93	0	59	52	0	0	47	1.00
61000--61039	20	2.0	20	90	0	62	40	0	15	45	1.46
61019--61054	14	2.5	14	90	4	54	44	2	8	44	1.48
61015--61268	38	6.7	37	80	8	253	45	3	8	42	1.53
61102--61128	14	1.9	14	100	0	54	48	7	7	37	1.59
61015--61264	75	3.3	73	84	7	306	45	4	8	41	1.54
61316--61375	5	10.8	5	81	13	57	16	5	0	78	0.92
61318--61381	13	4.8	12	76	17	56	15	6	0	78	0.95
61344--61375	10	3.2	10	100	0	64	18	0	0	81	0.70
61344--61375	15	2.1	15	100	0	64	18	0	0	81	0.70
68905--68955	23	2.2	23	82	0	57	23	23	23	29	1.99
86753--86818	23	2.9	23	76	0	69	21	25	21	31	1.98
89710--89845	64	2.1	63	85	4	175	34	20	20	24	1.96
91071--91129	23	2.6	23	86	0	82	18	25	25	30	1.98
101041--101076	10	3.5	11	82	17	51	47	0	5	47	1.25
101042--101105	12	5.6	11	72	18	51	53	1	3	42	1.26
101041--101082	14	3.2	13	83	13	50	50	0	4	45	1.23
101094--101152	20	2.7	23	79	15	70	42	1	11	44	1.51
101180--101232	22	2.3	23	80	9	63	39	1	5	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101234--101428	82	2.4	78	75	18	184	45	4	10	40	1.59
101374--101428	22	2.5	22	85	2	76	41	1	7	49	1.41
110734--110805	31	2.3	32	85	2	101	27	8	1	62	1.32
112779--112813	17	2.1	17	94	0	61	51	25	14	8	1.70

Tables:   1

The End!