genome.fa.s603.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000603.1 Hibiscus syriacus cultivar Beakdansim tig00001172_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162520

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932--1129	89	2.2	90	90	2	310	56	8	6	29	1.52
1119--1162	22	2.0	23	90	4	72	47	18	15	18	1.83
3555--3584	16	1.9	15	93	6	51	40	0	0	60	0.97
4647--4696	19	2.5	20	80	9	57	54	0	2	44	1.11
7801--7911	14	8.0	13	76	12	62	48	27	2	21	1.63
7801--7911	21	5.3	21	75	7	91	48	27	2	21	1.63
7801--7913	28	4.0	28	73	8	86	47	27	2	22	1.64
7992--8021	14	2.1	14	93	0	51	43	0	6	50	1.28
8477--8563	41	2.1	41	93	4	149	58	0	5	35	1.22
10254--10304	24	2.1	24	82	7	59	45	3	3	47	1.40
18172--18200	15	2.0	15	93	6	51	48	6	0	44	1.29
19555--19636	31	2.6	31	90	0	128	24	10	17	47	1.79
19649--19727	16	4.9	16	95	0	131	59	20	12	7	1.57
20814--20880	24	2.8	24	93	4	109	46	22	19	11	1.82
30416--30446	12	2.7	12	95	5	55	61	0	0	38	0.96
31565--31720	31	5.0	31	89	1	233	35	22	20	21	1.96
31898--31944	23	2.0	24	91	4	78	34	21	0	44	1.52
32576--32620	21	2.1	21	87	0	63	15	24	28	31	1.96
35432--35587	31	5.0	31	89	1	233	35	22	20	21	1.96
35765--35811	23	2.0	24	91	4	78	34	21	0	44	1.52
36441--36485	21	2.1	21	87	0	63	15	24	28	31	1.96
39297--39452	31	5.0	31	89	1	233	35	22	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39628--39674	23	2.0	24	91	4	78	34	21	0	44	1.52
40304--40348	21	2.1	21	87	0	63	15	24	28	31	1.96
44122--44175	27	2.0	27	100	0	108	51	11	7	29	1.64
62186--62217	6	5.3	6	92	0	55	31	50	15	3	1.60
66004--66037	2	17.0	2	100	0	68	50	0	0	50	1.00
70815--70849	17	2.1	17	94	0	61	22	11	20	45	1.82
72390--72434	23	2.0	23	86	0	63	26	28	24	20	1.99
72413--72716	149	2.0	149	99	0	599	34	20	16	27	1.95
73601--73635	18	1.9	18	88	11	54	22	17	5	54	1.64
74218--74262	21	2.1	21	87	0	63	15	24	28	31	1.96
88946--89108	8	20.5	8	70	16	83	79	1	11	7	1.01
88953--88993	10	4.0	10	90	3	55	87	4	4	2	0.72
88948--88993	20	2.3	20	80	0	56	84	4	6	4	0.85
88943--89105	14	12.1	14	68	24	61	79	1	11	7	1.01
89042--89106	9	7.7	9	77	18	52	80	0	12	7	0.91
89013--89105	41	2.3	41	81	18	108	78	0	15	6	0.94
89015--89117	17	6.6	15	70	22	52	77	0	15	6	0.96
90435--90636	51	3.9	51	94	2	332	29	14	28	26	1.95
90076--91220	573	2.0	573	98	0	2236	33	13	22	30	1.93
91024--91472	55	8.4	55	83	7	432	29	15	24	30	1.95
91024--91410	161	2.4	160	86	4	507	28	15	25	29	1.96
91379--91507	55	2.4	54	80	6	143	31	14	19	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103547--103578	2	16.0	2	100	0	64	50	0	0	50	1.00
110659--110926	136	2.0	136	93	1	466	30	20	16	32	1.94
119826--119860	19	1.9	17	88	11	52	37	5	0	57	1.23
121603--121656	21	2.7	20	77	5	56	64	1	1	31	1.14
121596--121656	20	3.0	20	70	13	54	63	1	1	32	1.13
123377--123404	9	3.1	9	100	0	56	42	0	0	57	0.99
123830--123909	39	2.1	39	87	0	115	42	13	8	35	1.76
128216--128337	31	3.9	31	72	6	95	27	29	26	17	1.97
128217--128337	63	1.9	63	83	9	158	26	29	26	17	1.97
129222--129279	17	3.4	17	92	0	98	18	24	39	17	1.92
129274--129323	19	2.6	19	93	0	82	24	34	24	18	1.96
135571--135646	31	2.4	31	80	2	89	27	31	26	14	1.95
135523--135646	63	2.0	63	82	9	155	26	29	27	16	1.97
136521--136578	17	3.4	17	92	0	98	18	24	39	17	1.92
148266--148728	180	2.6	182	90	0	687	42	13	15	27	1.86
149159--149207	19	2.6	19	96	0	89	32	0	10	57	1.32
149159--149219	19	3.3	19	90	2	79	34	0	11	54	1.37
149743--150331	183	3.2	183	93	1	986	34	13	16	34	1.89
150205--150451	120	2.1	120	94	0	431	31	13	16	38	1.87
150022--150616	303	2.0	303	95	0	1073	33	14	17	34	1.90
152156--152200	23	2.0	23	86	0	63	37	15	8	37	1.79
153346--153401	29	2.0	28	82	3	67	51	1	1	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158624--158765	77	1.9	76	96	1	266	11	30	21	36	1.89

Tables:   1

The End!