Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006031.1 Hibiscus syriacus cultivar Beakdansim tig00014236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74676

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1409--1470
20
3.0
20
76
7
61
16
25
33
24
1.95
4754--4800
20
2.2
21
78
17
53
44
6
12
36
1.68
9060--9176
58
2.0
58
94
0
207
48
13
9
28
1.73
14083--14500
207
2.0
207
98
0
800
29
18
16
34
1.94
15714--15768
21
2.6
21
91
0
83
18
18
23
40
1.91
26944--27016
21
3.4
20
75
20
76
19
17
28
34
1.95
28469--28506
16
2.4
16
82
8
51
36
7
5
50
1.54
34283--34311
2
14.5
2
100
0
58
48
0
0
51
1.00
34461--34502
22
1.9
22
95
0
75
33
21
21
23
1.97
34615--34665
21
2.4
21
93
0
84
27
21
11
39
1.88
35168--35241
22
3.5
22
72
20
84
24
32
16
27
1.96
35128--35250
42
3.0
41
90
5
187
25
31
13
29
1.94
35167--35228
20
3.1
19
67
24
54
25
33
12
27
1.93
36017--36135
36
3.3
36
83
5
150
32
19
8
39
1.82
36017--36135
37
3.2
37
84
5
152
32
19
8
39
1.82
36517--37188
137
4.9
137
86
0
840
28
28
15
27
1.96
37394--37445
3
17.3
3
100
0
104
32
0
0
67
0.91
41051--41135
5
16.4
5
71
24
52
75
2
7
15
1.12
41104--41160
21
2.7
21
80
17
57
71
0
5
22
1.05
41101--41152
12
4.2
12
77
2
50
73
0
3
23
1.00
41170--41212
18
2.4
18
92
7
70
74
0
2
23
0.93
42630--42864
123
1.9
123
82
1
292
26
14
20
38
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50294--50367
10
6.8
10
73
13
58
78
1
4
16
0.97
50336--50365
15
1.9
16
93
6
53
83
3
0
13
0.77
50302--50417
12
10.2
12
68
16
50
74
0
5
19
1.06
50353--50427
24
3.1
24
76
19
61
69
1
8
21
1.22
50458--50500
18
2.4
18
88
7
61
69
0
9
20
1.15
52610--52653
22
2.0
22
90
0
70
27
13
22
36
1.92
68344--68394
23
2.3
22
83
6
68
74
1
5
17
1.11

Tables:   1

The End!