Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006032.1 Hibiscus syriacus cultivar Beakdansim tig00014239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69401

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4363--4682
113
2.8
114
95
1
554
32
16
20
30
1.95
7095--7170
22
3.5
22
83
0
107
34
17
13
35
1.88
7665--7988
164
2.0
163
91
0
522
35
13
13
37
1.84
8029--8146
36
3.3
36
71
3
121
29
18
11
39
1.87
8179--8486
114
2.7
114
94
0
535
37
15
19
27
1.92
8436--8536
50
2.0
50
98
0
193
48
10
18
21
1.79
8322--8650
164
2.0
164
90
2
518
40
13
18
27
1.88
8584--8911
122
2.7
122
90
3
506
42
15
17
23
1.88
9118--9170
21
2.4
23
79
17
67
45
1
0
52
1.11
9551--9620
23
3.0
23
83
10
79
57
7
32
2
1.41
9560--9611
22
2.5
20
80
17
61
57
5
32
3
1.40
10399--10456
26
2.2
27
84
3
73
41
1
0
56
1.09
13867--14049
95
1.9
94
82
7
228
28
17
15
38
1.91
14219--15337
113
10.0
113
90
3
1685
27
17
15
38
1.90
14099--15336
338
3.7
339
88
5
1719
27
17
15
39
1.90
14099--15337
451
2.8
445
88
5
1685
27
17
15
39
1.90
15733--15793
22
2.8
22
89
0
95
36
14
13
36
1.85
23852--23905
14
3.8
14
85
2
63
51
9
14
24
1.71
35507--35662
65
2.4
65
85
5
210
26
19
23
30
1.98
38296--38353
21
2.7
20
81
5
53
20
24
27
27
1.99
40823--41139
151
2.1
149
92
2
528
29
16
20
34
1.94
41107--41151
23
2.0
23
95
0
81
24
24
26
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43700--43739
21
1.9
21
89
0
62
30
7
7
55
1.56
45683--45849
65
2.6
65
83
5
198
27
17
22
32
1.97
53708--53768
23
2.7
23
81
0
77
19
26
21
32
1.97
60767--60852
39
2.3
39
89
4
131
48
6
12
31
1.68

Tables:   1

The End!