Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006033.1 Hibiscus syriacus cultivar Beakdansim tig00014241_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63585

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9365--9719
178
2.0
177
97
0
674
42
14
10
32
1.80
11127--11229
21
5.1
20
83
10
138
14
28
38
18
1.90
11127--11227
41
2.5
39
85
7
139
14
28
37
18
1.91
14429--14508
18
4.1
19
84
10
108
15
26
37
21
1.92
14450--14515
18
3.6
18
87
6
71
16
25
33
24
1.96
15924--15983
3
20.3
3
82
3
77
63
1
1
33
1.14
16128--16599
134
3.5
133
82
3
572
28
16
23
31
1.96
17829--17875
9
4.9
9
78
21
51
4
19
0
76
0.95
17829--17904
20
4.0
19
82
12
86
6
18
0
75
1.02
17813--17904
40
2.4
37
79
15
98
5
17
1
76
1.04
17864--17914
16
3.0
16
74
20
50
7
21
0
70
1.12
26750--26783
11
3.1
11
82
0
50
38
8
26
26
1.85
27614--27979
131
2.8
131
83
3
398
41
15
10
32
1.81
29414--29463
2
25.0
2
100
0
100
50
0
0
50
1.00
30033--30091
3
20.3
3
76
13
52
57
1
1
38
1.19
30033--30097
18
3.7
18
75
20
66
53
1
1
43
1.19
31196--31355
1
160.0
1
64
0
59
81
0
6
11
0.86
31198--31352
14
10.4
16
70
22
81
81
0
7
11
0.87
31200--31354
24
6.6
22
74
16
109
81
0
7
11
0.87
31260--31330
34
2.1
34
94
5
126
83
0
0
16
0.66
31260--31330
9
8.5
8
80
13
81
83
0
0
16
0.66
31195--31354
17
9.6
17
68
18
86
81
0
7
11
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33141--33209
36
1.9
36
93
0
120
44
4
8
42
1.55
33145--33204
17
3.4
17
73
24
61
46
5
8
40
1.56
35053--35173
54
2.2
54
82
4
127
37
23
13
26
1.91
35085--35200
54
2.1
55
90
6
184
36
22
12
29
1.90
38957--39134
89
2.0
89
98
0
347
38
16
8
35
1.81
40403--40515
45
2.5
45
89
0
172
23
23
15
37
1.93
40847--40962
54
2.1
55
88
3
173
34
21
13
30
1.92
45108--45145
20
1.9
20
88
0
58
42
5
2
50
1.39
50375--50426
20
2.6
21
87
9
81
46
13
17
23
1.83
55778--55897
21
5.6
21
82
11
111
22
19
25
33
1.97
55789--55897
42
2.6
42
86
5
141
23
17
25
33
1.96
56872--57702
422
2.0
422
99
0
1635
33
8
24
34
1.85
60417--60493
21
3.6
21
75
13
75
20
12
27
38
1.89

Tables:   1

The End!