Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006034.1 Hibiscus syriacus cultivar Beakdansim tig00014242_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79880

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2875--2929
24
2.3
24
93
0
92
14
16
12
56
1.68
4806--4838
16
2.0
17
94
5
59
39
0
0
60
0.97
4835--5118
43
6.7
41
81
5
282
24
22
19
34
1.97
4866--5153
85
3.4
85
81
5
339
27
23
18
30
1.98
4867--5125
42
6.1
42
83
4
306
26
23
18
31
1.98
5654--5688
15
2.2
16
90
5
54
42
0
0
57
0.99
5639--5696
18
3.3
18
75
22
61
43
0
0
56
0.99
7943--7979
19
2.0
18
89
5
56
27
5
10
56
1.55
23339--23383
22
2.2
21
88
11
67
31
24
8
35
1.86
24349--24440
29
3.1
29
98
1
175
48
14
9
27
1.74
36783--36824
2
21.0
2
100
0
84
50
0
0
50
1.00
39107--39154
3
15.7
3
91
4
69
62
0
0
37
0.95
39590--39629
19
2.2
18
90
4
62
40
0
20
40
1.52
39622--39662
22
1.9
21
90
5
64
46
0
17
36
1.48
44321--44376
26
2.2
26
83
0
67
64
1
0
33
1.04
46124--46165
16
2.6
17
77
7
52
14
0
11
73
1.09
47299--47355
3
19.0
3
100
0
114
66
0
0
33
0.92
48773--48826
24
2.4
22
79
11
63
44
1
0
53
1.11
48780--48825
21
2.2
20
85
11
58
47
2
0
50
1.13
49209--49279
22
3.0
24
79
12
74
53
8
36
1
1.40
49880--49910
15
2.1
15
93
0
53
54
0
3
41
1.16
50083--50150
26
2.6
26
81
11
77
38
1
0
60
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50147--50434
149
1.9
148
81
8
345
37
6
8
46
1.62
52523--52579
22
2.6
22
80
0
69
26
14
5
54
1.61
56634--56954
114
2.8
114
95
0
563
32
16
20
30
1.95
59385--59460
22
3.5
22
83
0
107
34
17
13
35
1.88
59964--60290
165
2.0
165
91
1
530
35
13
13
37
1.84
60332--60450
36
3.3
36
72
2
130
30
18
11
39
1.86
60334--60478
73
2.0
73
98
0
281
30
20
13
35
1.92
60362--60482
37
3.3
37
72
3
129
33
21
14
31
1.93
60484--60791
114
2.7
114
94
0
535
37
15
19
27
1.92
60741--60841
50
2.0
50
98
0
193
48
10
18
21
1.79
60627--60955
164
2.0
164
90
2
518
40
13
18
27
1.88
60889--61224
122
2.7
123
92
1
557
42
15
17
24
1.88
61437--61481
21
2.2
21
85
14
60
46
2
0
51
1.13
61866--61935
23
3.0
23
83
10
79
57
7
32
2
1.41
61875--61926
22
2.5
20
80
17
61
57
5
32
3
1.40
62773--63061
147
2.0
147
84
6
381
37
6
7
47
1.60
66222--66405
95
1.9
95
81
8
223
28
17
15
38
1.91
66575--67698
113
10.0
113
91
2
1712
28
17
15
38
1.90
66575--67698
224
5.0
226
92
2
1685
28
17
15
38
1.90
66455--67698
563
2.2
561
87
5
1729
27
17
15
39
1.90
68095--68155
22
2.8
22
89
0
95
36
14
13
36
1.85
76167--76218
14
3.7
14
82
7
52
51
9
15
23
1.72

Tables:   1

The End!