Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006036.1 Hibiscus syriacus cultivar Beakdansim tig00014253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82362

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2890--2929
21
1.9
21
89
0
62
25
40
25
10
1.86
7104--7145
21
2.1
19
86
8
57
28
16
14
40
1.88
11563--11646
19
4.4
18
78
14
80
45
0
1
53
1.08
11588--11644
22
2.6
22
81
13
73
43
0
1
54
1.10
11615--11670
16
3.3
16
74
18
51
41
1
1
55
1.21
30890--30914
10
2.5
10
100
0
50
84
0
0
16
0.63
31936--31966
11
2.8
11
100
0
62
16
6
38
38
1.74
32382--32555
91
1.9
91
84
4
235
21
20
16
41
1.89
33595--33636
12
3.6
12
84
15
61
14
11
0
73
1.09
38769--38850
23
3.6
22
85
6
101
31
19
25
23
1.98
40870--41320
46
9.8
46
85
3
448
23
22
12
41
1.87
40870--41310
139
3.2
139
85
4
538
23
22
12
42
1.87
41066--41338
45
6.0
45
84
5
241
24
22
11
40
1.88
41937--41990
22
2.5
22
96
0
99
22
22
14
40
1.90
44446--44494
4
12.2
4
91
0
71
24
6
26
42
1.78
44452--44513
12
5.1
12
82
3
61
29
8
27
35
1.85
44511--44544
15
2.3
15
94
0
59
23
23
35
17
1.95
52534--52676
48
3.0
47
86
5
189
32
6
28
31
1.84
57148--57201
24
2.2
25
90
3
83
37
3
18
40
1.69
59580--60053
178
2.7
174
78
7
469
34
17
12
34
1.88
60198--60244
16
2.8
17
83
6
60
10
6
8
74
1.22
60216--60254
18
2.2
18
90
0
60
12
5
2
79
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60379--60412
16
2.1
16
100
0
68
23
23
11
41
1.87
70359--70541
46
4.0
46
91
2
291
38
7
22
31
1.81
71601--71667
22
3.0
22
82
4
89
28
25
19
26
1.99
71651--71771
32
3.4
32
71
25
107
23
29
18
28
1.98
71667--71792
37
3.3
37
72
25
136
23
29
19
27
1.98
71603--71794
77
2.5
77
96
0
348
24
29
18
27
1.98
71823--71888
34
2.0
33
85
8
89
30
30
16
22
1.96
71840--71870
15
2.1
15
93
0
53
32
29
12
25
1.93
73757--73798
17
2.4
17
92
4
66
73
0
2
23
0.94
74993--75033
11
3.6
11
96
3
73
31
0
0
68
0.90
74993--75033
14
2.9
15
89
10
68
31
0
0
68
0.90
74993--75033
3
14.3
3
90
10
68
31
0
0
68
0.90
76274--76303
14
2.1
14
100
0
60
26
0
6
66
1.16

Tables:   1

The End!