genome.fa.s6037.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006037.1 Hibiscus syriacus cultivar Beakdansim tig00014257_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116889

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10678--10722	21	2.1	21	84	8	56	31	26	24	17	1.97
12095--12122	14	2.0	14	100	0	56	28	7	28	35	1.84
12500--12544	23	2.0	23	90	0	72	22	26	26	24	2.00
15812--15856	21	2.1	21	87	0	63	31	28	24	15	1.96
17370--17678	145	2.1	146	92	4	518	27	16	21	34	1.95
17646--17690	23	2.0	23	90	0	72	22	26	26	24	2.00
30001--30048	17	2.9	16	78	9	60	29	12	0	58	1.35
30108--30149	17	2.5	17	77	11	50	28	11	0	59	1.33
30007--30196	101	1.9	101	100	0	380	27	21	5	45	1.73
33297--33350	23	2.3	23	96	0	99	7	22	40	29	1.81
36807--37203	135	2.9	135	93	1	668	45	6	11	36	1.66
37345--37371	2	13.5	2	100	0	54	48	0	0	51	1.00
38989--39021	15	2.2	15	100	0	66	33	33	18	15	1.92
39561--39703	64	2.2	64	83	4	191	28	19	18	33	1.95
45899--45931	15	2.2	15	100	0	66	33	33	18	15	1.92
46398--46615	64	3.4	64	82	5	192	27	17	19	34	1.95
47971--47996	2	13.0	2	100	0	52	50	0	0	50	1.00
49732--49768	16	2.3	16	100	0	74	45	5	5	43	1.49
57053--57098	24	1.9	24	90	0	74	10	67	2	19	1.31
57056--57108	12	4.4	12	79	9	54	9	69	3	16	1.30
57056--57108	24	2.2	24	83	6	63	9	69	3	16	1.30
62252--62350	39	2.7	35	82	14	103	32	38	17	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65862--65920	19	3.1	19	76	11	66	18	25	23	32	1.97
70060--70085	2	13.0	2	100	0	52	50	0	0	50	1.00
77981--78181	65	3.1	64	78	14	216	26	18	23	31	1.98
84980--85047	33	2.1	33	88	0	100	20	14	44	20	1.87
86780--86836	21	2.8	20	71	26	55	59	3	0	36	1.14
86787--86854	17	4.1	16	79	9	66	57	2	0	39	1.14
88298--88347	23	2.2	23	82	7	57	48	18	24	10	1.78
88377--88407	16	1.9	16	93	0	53	83	0	9	6	0.79
94755--94828	37	2.0	37	100	0	148	21	21	21	35	1.96
96604--96773	88	1.9	87	87	5	245	37	19	6	37	1.78
98281--98313	14	2.3	14	94	5	57	42	15	0	42	1.46
103172--103206	18	1.9	18	100	0	70	17	40	25	17	1.90
106248--106284	16	2.4	16	90	4	58	32	5	2	59	1.34

Tables:   1

The End!