genome.fa.s6039.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006039.1 Hibiscus syriacus cultivar Beakdansim tig00014261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79532

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1152--1181	13	2.3	13	94	0	51	23	6	13	56	1.60
5045--5181	54	2.5	54	80	4	150	37	18	9	35	1.83
5146--5425	57	5.0	57	87	8	405	38	18	10	32	1.84
5153--5425	109	2.4	113	91	4	439	38	18	9	33	1.84
7716--7758	20	2.2	20	86	0	59	18	4	13	62	1.48
19146--19802	218	3.0	216	80	5	644	32	19	20	28	1.96
19146--19802	55	12.0	55	81	5	589	32	19	20	28	1.96
21645--21669	5	5.0	5	100	0	50	20	0	0	80	0.72
25669--25765	30	3.4	29	72	13	92	58	14	10	16	1.62
25669--25777	30	3.8	30	72	8	75	60	13	10	15	1.58
27171--27212	15	2.9	14	80	16	50	59	2	0	38	1.10
27410--27670	133	2.0	130	83	9	334	24	16	32	26	1.96
27629--27723	46	2.1	46	89	0	145	23	15	30	30	1.95
27498--27850	176	2.0	178	84	4	462	24	16	32	26	1.97
27676--27937	134	2.0	134	81	4	314	24	17	32	25	1.96
27981--28229	66	3.8	64	79	9	240	40	13	19	27	1.88
27979--28230	132	1.9	132	81	8	311	40	13	19	27	1.88
28829--29022	30	6.5	29	74	11	142	57	10	13	18	1.65
30333--30380	12	3.8	12	78	8	51	70	2	0	27	0.98
31358--31396	21	1.9	19	90	10	60	69	5	17	7	1.32
43535--43648	60	1.9	59	85	1	156	28	14	25	30	1.95
43694--43749	20	2.7	20	86	5	67	16	3	21	58	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43746--43853	46	2.4	45	86	4	155	36	6	24	33	1.81
50495--50537	20	2.2	20	91	0	68	18	4	20	55	1.60
55875--55900	2	13.0	2	100	0	52	50	0	0	50	1.00
64493--64519	12	2.2	12	100	0	54	33	14	0	51	1.43
65940--65983	17	2.6	17	86	10	63	45	9	13	31	1.75
65958--66002	18	2.6	18	85	3	56	44	11	8	35	1.71
74384--74546	59	2.7	60	82	6	197	56	6	14	22	1.61
74351--74572	30	7.4	30	74	5	155	56	8	13	22	1.63
76157--76195	19	2.1	19	90	0	60	64	0	5	30	1.15
76146--76199	22	2.5	22	77	14	58	61	0	3	35	1.14

Tables:   1

The End!