Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006040.1 Hibiscus syriacus cultivar Beakdansim tig00014262_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77843
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:3829 original size:17 final size:17
Alignment explanation
Indices: 3807--3852 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
3797 AATAAATTAA
**
3807 CATCGATGCAATTAGTG
1 CATCGATGCAAGGAGTG
3824 CATCGATGCATAAGGAGTG
1 CATCGATGC--AAGGAGTG
3843 CATCGATGCA
1 CATCGATGCA
3853 TCCCCTTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 10 0.40
19 15 0.60
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (17 bp):
CATCGATGCAAGGAGTG
Found at i:5452 original size:23 final size:23
Alignment explanation
Indices: 5420--5480 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
5410 ACCTTATATA
*
5420 GCACTTCGGTGCATTTCTACGCG
1 GCACTTCGGTACATTTCTACGCG
* * * *
5443 GCACTACGGTACAATTCTATGTG
1 GCACTTCGGTACATTTCTACGCG
5466 GCACTTCGGTACATT
1 GCACTTCGGTACATT
5481 ATACAAGCTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (23 bp):
GCACTTCGGTACATTTCTACGCG
Found at i:12518 original size:38 final size:39
Alignment explanation
Indices: 12444--12529 Score: 131
Period size: 39 Copynumber: 2.3 Consensus size: 39
12434 ACGAAGTACT
*
12444 AAAA-TGAAACAAACACTAAACTTTAGGTATGATTTTGA
1 AAAATTGAAACAAAAACTAAACTTTAGGTATGATTTTGA
* *
12482 AAAATTGAAACAAAAATTTAACTTTAGGTATG-TTTTGA
1 AAAATTGAAACAAAAACTAAACTTTAGGTATGATTTTGA
12520 AAAATTGAAA
1 AAAATTGAAA
12530 GTGTAGGTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 20 0.45
39 24 0.55
ACGTcount: A:0.49, C:0.07, G:0.13, T:0.31
Consensus pattern (39 bp):
AAAATTGAAACAAAAACTAAACTTTAGGTATGATTTTGA
Found at i:20969 original size:45 final size:45
Alignment explanation
Indices: 20908--20998 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
20898 AAAAATAACA
*
20908 AATATAACCTAATCAGGGGAAAGTAAAACCTAGGATTACATAAAC
1 AATATAACCTAATCAGGAGAAAGTAAAACCTAGGATTACATAAAC
**
20953 AATATAACCTAATCAGGAGAAAGTAAAACCTAGGATTTTATAAAC
1 AATATAACCTAATCAGGAGAAAGTAAAACCTAGGATTACATAAAC
20998 A
1 A
20999 TTGCATCATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.22
Consensus pattern (45 bp):
AATATAACCTAATCAGGAGAAAGTAAAACCTAGGATTACATAAAC
Found at i:25742 original size:6 final size:6
Alignment explanation
Indices: 25731--25759 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
25721 ATTAAAAATA
25731 ATATTT ATATTT ATATTT ATATTT ATATT
1 ATATTT ATATTT ATATTT ATATTT ATATT
25760 GTGTGTGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
ATATTT
Found at i:29335 original size:21 final size:21
Alignment explanation
Indices: 29309--29350 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
29299 CCAGAATGGG
*
29309 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
*
29330 GGGAATCGATACCCTTTCATA
1 GGGAATCGATACCCCTTCATA
29351 ATATTCAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:29500 original size:19 final size:19
Alignment explanation
Indices: 29458--29524 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
29448 GCCTCGGGGG
* *
29458 TACTGTTCAAACAGTGATTT
1 TACTGTTCAAATAGT-AATT
29478 TACTGTTCAAATAGTAATT
1 TACTGTTCAAATAGTAATT
*
29497 TACTGTTCAAATAGTAAAT
1 TACTGTTCAAATAGTAATT
*
29516 TACTATTCA
1 TACTGTTCA
29525 TAAAAACATT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
19 29 0.67
20 14 0.33
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.40
Consensus pattern (19 bp):
TACTGTTCAAATAGTAATT
Found at i:29621 original size:29 final size:31
Alignment explanation
Indices: 29589--29648 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
29579 AAATTTTGAA
*
29589 TAAATTCAATT-AAGTCCAAATA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
29618 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
29649 CCTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 10 0.36
31 7 0.25
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:32976 original size:19 final size:19
Alignment explanation
Indices: 32931--32997 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
32921 GCCTCGGGGG
*
32931 TACTGTTCAAACAGTGATTT
1 TACTGTTCAAACAGT-AATT
*
32951 TACTGTTCAAATAGTAATT
1 TACTGTTCAAACAGTAATT
* * *
32970 TATTGTTTAAACAGTAAAT
1 TACTGTTCAAACAGTAATT
*
32989 TACTATTCA
1 TACTGTTCA
32998 TAAAAACATT
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
19 24 0.63
20 14 0.37
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (19 bp):
TACTGTTCAAACAGTAATT
Found at i:33094 original size:29 final size:31
Alignment explanation
Indices: 33062--33121 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
33052 AAATTTTGAA
*
33062 TAAATTCAATT-AAGTCCAAATA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
33091 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
33122 CCTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 10 0.36
31 7 0.25
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:36649 original size:5 final size:5
Alignment explanation
Indices: 36639--36668 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
36629 TAAAATGTGG
36639 TACCA TACCA TACCA TACCA TACCA TACCA
1 TACCA TACCA TACCA TACCA TACCA TACCA
36669 CAAACACAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (5 bp):
TACCA
Found at i:40839 original size:22 final size:21
Alignment explanation
Indices: 40808--40855 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 21
40798 ACTTATATAT
40808 CAAAAAAATTTCAATTAATAC
1 CAAAAAAATTTCAATTAATAC
40829 CAAAACAAATTTCAATTAATAC
1 CAAAA-AAATTTCAATTAATAC
40851 CAAAA
1 CAAAA
40856 GTAGTTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.58, C:0.17, G:0.00, T:0.25
Consensus pattern (21 bp):
CAAAAAAATTTCAATTAATAC
Found at i:41609 original size:30 final size:30
Alignment explanation
Indices: 41568--41637 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
41558 TAAAATTAAC
* *
41568 TTTGAAGTTTATAATACCATTTTTCAATAT
1 TTTGGAGTTTATAATACCATCTTTCAATAT
*
41598 TTTGGAGTTTATAATATCATCTTTCAATAT
1 TTTGGAGTTTATAATACCATCTTTCAATAT
41628 TTTGGAGTTT
1 TTTGGAGTTT
41638 GAATTAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.51
Consensus pattern (30 bp):
TTTGGAGTTTATAATACCATCTTTCAATAT
Found at i:52843 original size:75 final size:75
Alignment explanation
Indices: 52736--52901 Score: 244
Period size: 75 Copynumber: 2.2 Consensus size: 75
52726 GTTGTACAAG
* * *
52736 GGGGGAATCGGTACCCCCTTGGGGGGGATCGGTTCCCTCCGAGCATACTGGAATTCTCGGAG-CA
1 GGGGGAATCGGTTCCCCCTTGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGCCA
**
52800 AAACTGTTTA
66 AAACCATTTA
* * *
52810 GGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGGGCC
1 GGGGGAATCGGTTCCCCCT-TGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGCC
52875 AAAACCATTTA
65 AAAACCATTTA
52886 GGGGGAATCGGTTCCC
1 GGGGGAATCGGTTCCC
52902 TCTGAGCAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
74 17 0.21
75 39 0.48
76 25 0.31
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.23
Consensus pattern (75 bp):
GGGGGAATCGGTTCCCCCTTGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGCCA
AAACCATTTA
Found at i:53569 original size:36 final size:36
Alignment explanation
Indices: 53522--53593 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
53512 CCTAGCATTC
*
53522 GCCAAGAACCAGATTCGGATCCTGTTGCCTCTGAAA
1 GCCAAGAACCAGATTCGGATCCTGTTGCATCTGAAA
53558 GCCAAGAACCAGATTCGGATCCTGTTGCATCTGAAA
1 GCCAAGAACCAGATTCGGATCCTGTTGCATCTGAAA
53594 CAGAAGGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (36 bp):
GCCAAGAACCAGATTCGGATCCTGTTGCATCTGAAA
Found at i:55580 original size:18 final size:18
Alignment explanation
Indices: 55533--55588 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
55523 TTGTTTGTTT
*
55533 CCTACAGTTTGTTTTCTA
1 CCTACAGTCTGTTTTCTA
* *
55551 CCATACAATCTGTTTTCTT
1 CC-TACAGTCTGTTTTCTA
*
55570 TCTACAGTCTGTTTTCTA
1 CCTACAGTCTGTTTTCTA
55588 C
1 C
55589 ACATTCTTCA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
18 16 0.53
19 14 0.47
ACGTcount: A:0.18, C:0.25, G:0.09, T:0.48
Consensus pattern (18 bp):
CCTACAGTCTGTTTTCTA
Found at i:60514 original size:3 final size:3
Alignment explanation
Indices: 60508--60574 Score: 77
Period size: 3 Copynumber: 23.0 Consensus size: 3
60498 AAAAAATATG
* **
60508 TAA TAA TAAA TAA TAA TAA -AA TAA TAA -GA TAA CGA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
60552 TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
60575 CGATAAAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
2 5 0.09
3 46 0.85
4 3 0.06
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:60566 original size:35 final size:35
Alignment explanation
Indices: 60508--60580 Score: 121
Period size: 35 Copynumber: 2.1 Consensus size: 35
60498 AAAAAATATG
*
60508 TAATAATAAATAATAATAAAATAATAAGATAACGA
1 TAATAATAAATAATAATAAAATAATAAAATAACGA
60543 TAATAAT-AATAATAATAATAATAATAAAATAACGA
1 TAATAATAAATAATAATAA-AATAATAAAATAACGA
60578 TAA
1 TAA
60581 AAAAAACCCG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 11 0.31
35 25 0.69
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (35 bp):
TAATAATAAATAATAATAAAATAATAAAATAACGA
Found at i:60980 original size:130 final size:129
Alignment explanation
Indices: 60785--61114 Score: 482
Period size: 130 Copynumber: 2.5 Consensus size: 129
60775 GTGACATGGT
* * ** * *
60785 TCCTACGTGATGAGGAAATCTGGTCAAGGGTTGACACTGCTCATACGTGATGAAGAGTTCTTGGC
1 TCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGCTCATACGTGATGAAGAGTTC-TGGC
60850 CATCTTAAGGTGATAACACGGTTCCTACGTAATGAGGACGGCTGGTTATCTACGGTTGACACAGC
65 CATCTTAAGGTGATAACACGGTTCCTACGTAATGAGGACGGCTGGTTATCTACGGTTGACACAGC
60915 TCCTACGTGATGAAGAGATCTGGTCTGGGGAATGACACGGCTCATACGTGATGAAGAGTTCTGGC
1 TCCTACGTGATGAAGAGATCTGGTCTGGGG-ATGACACGGCTCATACGTGATGAAGAGTTCTGGC
* * * *
60980 CATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTGACACGGC
65 CATCTTAAGGTGATAACACGGTTCCTACGTAATGAGGACGGCTGGTTATCTACGGTTGACACAGC
* * * * * *
61045 TCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGGTTCCTACATGATGAGGACG-GCTGGC
1 TCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGCTCATACGTGATGAAGA-GTTCTGGC
61109 CATCTT
65 CATCTT
61115 TAGGAGTTAT
Statistics
Matches: 181, Mismatches: 17, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
129 32 0.18
130 121 0.67
131 28 0.15
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.26
Consensus pattern (129 bp):
TCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCC
ATCTTAAGGTGATAACACGGTTCCTACGTAATGAGGACGGCTGGTTATCTACGGTTGACACAGC
Found at i:61031 original size:46 final size:45
Alignment explanation
Indices: 60818--61068 Score: 137
Period size: 43 Copynumber: 5.7 Consensus size: 45
60808 TCAAGGGTTG
* * ** **
60818 ACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTTAAGGTGATA
1 ACACGGCTCCTACGTGATGAAGAGAGC-TGGTTATC-TAAGGTGATA
* * * * *
60865 ACACGGTTCCTACGTAATGAGGACG-GCTGGTTATCTACGGT--TG
1 ACACGGCTCCTACGTGATGAAGA-GAGCTGGTTATCTAAGGTGATA
* * * *
60908 ACACAGCTCCTACGTGATGAAGAGATCTGG---TCT--GGGGAATG
1 ACACGGCTCCTACGTGATGAAGAGAGCTGGTTATCTAAGGTG-ATA
* ** **
60949 ACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAAGAGAGCTGGTTATCT-AAGGTGATA
* * * *
60995 ACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCTATGGT--TG
1 ACACGGCTCCTACGTGATGAAGA-GAGCTGGTTATCTAAGGTGATA
* *
61038 ACACGGCTCATACGTGATGAAGAGATCTGGT
1 ACACGGCTCCTACGTGATGAAGAGAGCTGGT
61069 CTGGGGATGA
Statistics
Matches: 158, Mismatches: 33, Indels: 30
0.71 0.15 0.14
Matches are distributed among these distances:
38 2 0.01
40 3 0.02
41 29 0.18
42 2 0.01
43 50 0.32
44 3 0.02
45 9 0.06
46 36 0.23
47 23 0.15
48 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (45 bp):
ACACGGCTCCTACGTGATGAAGAGAGCTGGTTATCTAAGGTGATA
Found at i:61067 original size:89 final size:83
Alignment explanation
Indices: 60947--61107 Score: 232
Period size: 83 Copynumber: 1.9 Consensus size: 83
60937 GTCTGGGGAA
* * *
60947 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
1 TGACACGGCTCATACGTGATGAAGAGATCTGG---TCT---GGGGATAACACGGTTCCTACATGA
61012 TGAGGACGGCTGGTTATCTATGGT
60 TGAGGACGGCTGGTTATCTATGGT
*
61036 TGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGGTTCCTACATGATGAGGA
1 TGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATAACACGGTTCCTACATGATGAGGA
61101 CGGCTGG
66 CGGCTGG
61108 CCATCTTTAG
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
83 34 0.50
86 3 0.04
89 31 0.46
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (83 bp):
TGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATAACACGGTTCCTACATGATGAGGA
CGGCTGGTTATCTATGGT
Found at i:61166 original size:28 final size:28
Alignment explanation
Indices: 61146--61207 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
61136 AAACCAAATT
61146 AAAGATTTGTTTCAAAAGAAACAAACCC
1 AAAGATTTGTTTCAAAAGAAACAAACCC
* *
61174 AAAGATTTGTTTCAAGAA-AAATAAACTC
1 AAAGATTTGTTTCAA-AAGAAACAAACCC
61202 AAAGAT
1 AAAGAT
61208 GATATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 29 0.94
29 2 0.06
ACGTcount: A:0.52, C:0.13, G:0.11, T:0.24
Consensus pattern (28 bp):
AAAGATTTGTTTCAAAAGAAACAAACCC
Found at i:61566 original size:15 final size:15
Alignment explanation
Indices: 61542--61600 Score: 100
Period size: 15 Copynumber: 3.9 Consensus size: 15
61532 AAGATGATCT
*
61542 TGTTTTAAGAGAAAA
1 TGTTTCAAGAGAAAA
61557 TGTTTCAAGAGAAAA
1 TGTTTCAAGAGAAAA
61572 TGTTTCAAGAGAAAA
1 TGTTTCAAGAGAAAA
*
61587 TGTTTCAAGTGAAA
1 TGTTTCAAGAGAAA
61601 CGACTCAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 42 1.00
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (15 bp):
TGTTTCAAGAGAAAA
Found at i:61828 original size:62 final size:63
Alignment explanation
Indices: 61757--61880 Score: 162
Period size: 63 Copynumber: 2.0 Consensus size: 63
61747 AATGTGGGTA
* *
61757 TTTTCAAAAGAAGTTGTC-TCGAGAGACAAAATTTTATTT-CAAAGGAAACAAACTCAAAGATT
1 TTTTCAAAAGAAATTGTCTTCAAGAGACAAAATTTTATTTCCAAA-GAAACAAACTCAAAGATT
* * * * *
61819 TTTTCAAAAGAAATTGTCTTTAAGAGATAAAATTTTGTTTCCAAAGAAAGAGACTCAAAGAT
1 TTTTCAAAAGAAATTGTCTTCAAGAGACAAAATTTTATTTCCAAAGAAACAAACTCAAAGAT
61881 GGATTACATC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
62 17 0.32
63 32 0.60
64 4 0.08
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.31
Consensus pattern (63 bp):
TTTTCAAAAGAAATTGTCTTCAAGAGACAAAATTTTATTTCCAAAGAAACAAACTCAAAGATT
Found at i:62027 original size:30 final size:29
Alignment explanation
Indices: 61976--62032 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 29
61966 ACAACATTTG
* * * *
61976 TTTTTTTAAAGAAATAGACTCACAGATGA
1 TTTTGTTAAAGAAACAAACTCAAAGATGA
62005 TTTTGTTAAGAGAAACAAACTCAAAGAT
1 TTTTGTTAA-AGAAACAAACTCAAAGAT
62033 TTTCAAAATG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 8 0.35
30 15 0.65
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.32
Consensus pattern (29 bp):
TTTTGTTAAAGAAACAAACTCAAAGATGA
Found at i:62161 original size:37 final size:37
Alignment explanation
Indices: 62115--62241 Score: 112
Period size: 37 Copynumber: 3.6 Consensus size: 37
62105 GAAACAGATT
*
62115 CAAAGATTTTTTTTCAAAAGAAATTATCTTAAGAGAGA
1 CAAAGATTTTGTTTCAAAAGAAA-TATCTTAAGAGAGA
* **
62153 CAAA-ATTTTGTTTCCAAAG-AA-A-C---A-A-ACT
1 CAAAGATTTTGTTTCAAAAGAAATATCTTAAGAGAGA
62181 CAAAGATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
1 CAAAGA-TTTTGTTTCAAAAGAAA-TATCTTAAGAGAGA
*
62220 CAAA-ATTTTGTTTCCAAAGAAA
1 CAAAGATTTTGTTTCAAAAGAAA
62242 CAAACTCAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 23
0.69 0.08 0.23
Matches are distributed among these distances:
28 5 0.07
29 2 0.03
30 14 0.20
31 2 0.03
33 2 0.03
34 2 0.03
36 2 0.03
37 30 0.43
38 6 0.09
39 5 0.07
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (37 bp):
CAAAGATTTTGTTTCAAAAGAAATATCTTAAGAGAGA
Found at i:62210 original size:67 final size:66
Alignment explanation
Indices: 62062--62259 Score: 276
Period size: 67 Copynumber: 3.0 Consensus size: 66
62052 AAAGATTTAC
* * * * * * *
62062 TTCAAAAGAGACTGTCTCAAGAGATACAAAATTCAT-TTT--AAGAGAAACAGATTCAAAGATTT
1 TTCAAAAGAAACTATCTTAAGAGAGACAAAATT-TTGTTTCCAA-AGAAACAAACTCAAAGATTT
62124 TTT
64 TTT
*
62127 TTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTT
1 TTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTT
62192 GT
66 -T
62194 TTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTT
1 TTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTT
62259 T
66 T
62260 GAAAAGAAAC
Statistics
Matches: 120, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
64 1 0.01
65 31 0.26
66 21 0.17
67 67 0.56
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (66 bp):
TTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTT
T
Found at i:62265 original size:27 final size:27
Alignment explanation
Indices: 62235--62286 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
62225 TTTTGTTTCC
62235 AAAGAAACAAACTCAAAGATTTTTTGA
1 AAAGAAACAAACTCAAAGATTTTTTGA
*
62262 AAAGAAACAATCTCAAAGATTTTTT
1 AAAGAAACAAACTCAAAGATTTTTT
62287 TTTCACAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (27 bp):
AAAGAAACAAACTCAAAGATTTTTTGA
Found at i:62469 original size:141 final size:141
Alignment explanation
Indices: 62212--62573 Score: 591
Period size: 141 Copynumber: 2.5 Consensus size: 141
62202 AAACTATCTT
* * * * * *
62212 AAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTTTGAAAAGAAACAATCTCA
1 AAGAGAGACAAAACTTTGTTTCAAAATAAATAGACTCAAAGA-TTTTTCAAAAGAAACAATCTC-
* *
62277 AAGATTTTTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGACTCAAGGATTTTT
64 AA-ATATTTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGACTCAAAGATTTTT
62342 CACGAAATTGTCTC
128 CACGAAATTGTCTC
62356 AAGAGAGACAAAACTTTGTTTCAAAATAAATAGACTCAAAGATTTTTCAAAAGAAACAATCTCAA
1 AAGAGAGACAAAACTTTGTTTCAAAATAAATAGACTCAAAGATTTTTCAAAAGAAACAATCTCAA
*
62421 ATATTTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGACTCAAAGCTTTTTCAC
66 ATATTTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGACTCAAAGATTTTTCAC
62486 GAAATTGTCTC
131 GAAATTGTCTC
62497 AAGAGAGACAAAACTTTGTTTCAAAATAAATAGACTCAAAGATTTTTCAAAAGAAACAA-CTCAA
1 AAGAGAGACAAAACTTTGTTTCAAAATAAATAGACTCAAAGATTTTTCAAAAGAAACAATCTCAA
*
62561 AGATTTTTATTCA
66 ATATTTTT-TTCA
62574 AAAGGAACAG
Statistics
Matches: 207, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
140 12 0.06
141 136 0.66
142 2 0.01
143 20 0.10
144 37 0.18
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (141 bp):
AAGAGAGACAAAACTTTGTTTCAAAATAAATAGACTCAAAGATTTTTCAAAAGAAACAATCTCAA
ATATTTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGACTCAAAGATTTTTCAC
GAAATTGTCTC
Found at i:62562 original size:25 final size:27
Alignment explanation
Indices: 62516--62609 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 27
62506 AAAACTTTGT
* *
62516 TTCAAAATAAATAGACTCAAAGATTT-
1 TTCAAAAGAAACAGACTCAAAGATTTA
62542 TTCAAAAGAAACA-ACTCAAAGATTTTTA
1 TTCAAAAGAAACAGACTCAAAGA--TTTA
*
62570 TTCAAAAGGAACAGACTCAAAGATTTA
1 TTCAAAAGAAACAGACTCAAAGATTTA
*
62597 TCTCAAGAGAAAC
1 T-TCAAAAGAAAC
62610 TGTCTCCAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
25 9 0.16
26 11 0.19
27 8 0.14
28 21 0.36
29 9 0.16
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.26
Consensus pattern (27 bp):
TTCAAAAGAAACAGACTCAAAGATTTA
Found at i:62966 original size:36 final size:36
Alignment explanation
Indices: 62855--62973 Score: 113
Period size: 36 Copynumber: 3.4 Consensus size: 36
62845 AGAAAATGAT
* *
62855 GTCTCAAGCGAGACGAAA-TTTG-CTTTA-AGATATA-
1 GTCTCAAGCGAGAC-AAAGTTTGTTTTTAGAGA-AAAC
** **
62889 GTCTCAAATGAGACAAAGTTTGTTTTTAGAGAAATT
1 GTCTCAAGCGAGACAAAGTTTGTTTTTAGAGAAAAC
62925 GTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAAAC
1 GTCTCAAGCGAGACAAAGTTTGTTTTTAGAGAAAAC
*
62960 GATCTCAAGTGAGA
1 G-TCTCAAGCGAGA
62974 TCAACTTTGT
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
33 3 0.04
34 16 0.23
35 12 0.17
36 39 0.56
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (36 bp):
GTCTCAAGCGAGACAAAGTTTGTTTTTAGAGAAAAC
Found at i:62985 original size:36 final size:36
Alignment explanation
Indices: 62889--62973 Score: 118
Period size: 36 Copynumber: 2.4 Consensus size: 36
62879 TTAAGATATA
* **
62889 GTCTCAAATGAGACAAAGTTTGTTTTTAGAGAAATT
1 GTCTCAAGTGAGACAAAGTTTGTTTTTAGAGAAAAC
*
62925 GTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAAAC
1 GTCTCAAGTGAGACAAAGTTTGTTTTTAGAGAAAAC
62960 GATCTCAAGTGAGA
1 G-TCTCAAGTGAGA
62974 TCAACTTTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
35 7 0.16
36 36 0.84
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (36 bp):
GTCTCAAGTGAGACAAAGTTTGTTTTTAGAGAAAAC
Found at i:63104 original size:105 final size:104
Alignment explanation
Indices: 62925--63164 Score: 310
Period size: 105 Copynumber: 2.3 Consensus size: 104
62915 TAGAGAAATT
* *
62925 GTCTCAAGCGAGAC-AAAGTTTGTTTT-TGAG-AAAACGATCTCAAGTGAGATCAACTTTGTTTA
1 GTCTCAAGCGAGACGAAA-TTTGTTTTAAGAGAAAAACAATCTCAAGTGAGATCAACTTTGTTTA
* *
62987 ATGTGAAACAAATTCGAAATTTGGATCTCAAAGGGAAAAG
65 ATGTGAAACAAATTCAAAATTTGGATCTCAAAGGAAAAAG
* * *
63027 GTCTCAAGCGAGACGAAATTTGTTTTAAAAGAAACAACAATCT-AAGGTGAGATTAATTTTGTTT
1 GTCTCAAGCGAGACGAAATTTGTTTTAAGAGAAA-AACAATCTCAA-GTGAGATCAACTTTG-TT
* * *
63091 TAA-GTGAATCAAATTCAAAATTTGTATCTCAAAGGAAAAAT
63 TAATGTGAAACAAATTCAAAATTTGGATCTCAAAGGAAAAAG
*
63132 GTCTCAAGCGAGACGAAGTTTGTTTTAAGAGAA
1 GTCTCAAGCGAGACGAAATTTGTTTTAAGAGAA
63165 TTTGTCTCAA
Statistics
Matches: 120, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
102 22 0.18
103 5 0.04
104 4 0.03
105 84 0.70
106 5 0.04
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.30
Consensus pattern (104 bp):
GTCTCAAGCGAGACGAAATTTGTTTTAAGAGAAAAACAATCTCAAGTGAGATCAACTTTGTTTAA
TGTGAAACAAATTCAAAATTTGGATCTCAAAGGAAAAAG
Found at i:63171 original size:36 final size:36
Alignment explanation
Indices: 63131--63267 Score: 152
Period size: 36 Copynumber: 3.8 Consensus size: 36
63121 AAAGGAAAAA
* * *
63131 TGTCTCAAGCGAGACGAAGTTTGTTTTAAGAGAATT
1 TGTCTCAAGCGAGACAAAATTTGTTTTAAGAGAAAT
* * **
63167 TGTCTCAAACGAGACAAAATTTGTTTTTAGA-AAGC
1 TGTCTCAAGCGAGACAAAATTTGTTTTAAGAGAAAT
* * *
63202 TATCTCAGGCGAGACAAAATTTGCTTTGAA-AGAAAT
1 TGTCTCAAGCGAGACAAAATTTG-TTTTAAGAGAAAT
63238 TGTCTCAAGCGAGACAAAAATTTGTTTTAA
1 TGTCTCAAGCGAGAC-AAAATTTGTTTTAA
63268 AATTCTCAAA
Statistics
Matches: 82, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
35 23 0.28
36 51 0.62
37 8 0.10
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (36 bp):
TGTCTCAAGCGAGACAAAATTTGTTTTAAGAGAAAT
Found at i:63241 original size:71 final size:72
Alignment explanation
Indices: 63133--63265 Score: 189
Period size: 71 Copynumber: 1.9 Consensus size: 72
63123 AGGAAAAATG
* * * *
63133 TCTCAAGCGAGACGAAGTTTGTTTTAAGAGAATTTGTCTCAAACGAGAC-AAAATTTGTTTTTAG
1 TCTCAAGCGAGACAAAATTTGTTTGAAGAGAAATTGTCTCAAACGAGACAAAAATTTGTTTTTAG
63197 AAAGCTA
66 AAAGCTA
* *
63204 TCTCAGGCGAGACAAAATTTGCTTTGAA-AGAAATTGTCTCAAGCGAGACAAAAATTTGTTTT
1 TCTCAAGCGAGACAAAATTTG-TTTGAAGAGAAATTGTCTCAAACGAGACAAAAATTTGTTTT
63266 AAAATTCTCA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
71 37 0.69
72 17 0.31
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (72 bp):
TCTCAAGCGAGACAAAATTTGTTTGAAGAGAAATTGTCTCAAACGAGACAAAAATTTGTTTTTAG
AAAGCTA
Found at i:63650 original size:20 final size:20
Alignment explanation
Indices: 63625--63672 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
63615 TGTAACATGC
63625 ATGTATGTGTTGATGTATGT
1 ATGTATGTGTTGATGTATGT
*
63645 ATGTATGAGTTGATGTATGT
1 ATGTATGTGTTGATGTATGT
*
63665 ATATATGT
1 ATGTATGT
63673 ATGTATGAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (20 bp):
ATGTATGTGTTGATGTATGT
Found at i:64906 original size:22 final size:22
Alignment explanation
Indices: 64881--64930 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
64871 CTTTGCTGCC
64881 TTTTTTTTATTTTTGCTTTGAT
1 TTTTTTTTATTTTTGCTTTGAT
* *
64903 TTTTCTTTGTTTTTGCTTTGAT
1 TTTTTTTTATTTTTGCTTTGAT
64925 TTTTTT
1 TTTTTT
64931 CTCTCTGCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.06, C:0.06, G:0.10, T:0.78
Consensus pattern (22 bp):
TTTTTTTTATTTTTGCTTTGAT
Found at i:64910 original size:11 final size:12
Alignment explanation
Indices: 64889--64928 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
64879 CCTTTTTTTT
64889 ATTTTTGCTTTG
1 ATTTTTGCTTTG
64901 ATTTTT-CTTTG
1 ATTTTTGCTTTG
64912 -TTTTTGCTTTG
1 ATTTTTGCTTTG
64923 ATTTTT
1 ATTTTT
64929 TTCTCTCTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 5 0.19
11 10 0.38
12 11 0.42
ACGTcount: A:0.07, C:0.07, G:0.12, T:0.72
Consensus pattern (12 bp):
ATTTTTGCTTTG
Found at i:64943 original size:22 final size:20
Alignment explanation
Indices: 64918--64963 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
64908 TTTGTTTTTG
64918 CTTTGATTTTTTTCTCTCTGCT
1 CTTTG-TTTTTTT-TCTCTGCT
*
64940 CTTTGTTTTTTTTCTTTGCT
1 CTTTGTTTTTTTTCTCTGCT
64960 CTTT
1 CTTT
64964 TCTCTTTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.48
21 7 0.30
22 5 0.22
ACGTcount: A:0.02, C:0.20, G:0.09, T:0.70
Consensus pattern (20 bp):
CTTTGTTTTTTTTCTCTGCT
Found at i:64961 original size:27 final size:25
Alignment explanation
Indices: 64924--64977 Score: 63
Period size: 27 Copynumber: 2.1 Consensus size: 25
64914 TTTGCTTTGA
*
64924 TTTTTTTCTCTCTGCTCTTTGTTTT
1 TTTTTTTCTCTCTGCTCTTTGATTT
* *
64949 TTTTCTTTGCTCTTTTCTCTTTGATTT
1 TTTT-TTT-CTCTCTGCTCTTTGATTT
64976 TT
1 TT
64978 CTTTGTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.17
26 3 0.12
27 17 0.71
ACGTcount: A:0.02, C:0.19, G:0.07, T:0.72
Consensus pattern (25 bp):
TTTTTTTCTCTCTGCTCTTTGATTT
Found at i:65661 original size:20 final size:20
Alignment explanation
Indices: 65621--65662 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
65611 TAAAGAGAGG
* *
65621 GAATGTTTCAAGGTCGAAAA
1 GAATATTTCAAGGTCCAAAA
*
65641 GAATATTTCAAGGTCCCAAA
1 GAATATTTCAAGGTCCAAAA
65661 GA
1 GA
65663 GATAGAATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.24
Consensus pattern (20 bp):
GAATATTTCAAGGTCCAAAA
Found at i:65671 original size:46 final size:45
Alignment explanation
Indices: 65579--65672 Score: 118
Period size: 46 Copynumber: 2.1 Consensus size: 45
65569 ATAAATGCAG
* * * *
65579 TGTTTCAAGGTGGAAAGAATGTTTCAAGGCCTTAAAGAGAGGGAA
1 TGTTTCAAGGTGAAAAGAATATTTCAAGGCCTCAAAGAGAGAGAA
*
65624 TGTTTCAAGGTCGAAAAGAATATTTCAAGGTCC-CAAAGAGATAGAA
1 TGTTTCAAGGT-GAAAAGAATATTTCAAGG-CCTCAAAGAGAGAGAA
65670 TGT
1 TGT
65673 CAAAAATTGG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
45 11 0.26
46 29 0.69
47 2 0.05
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.26
Consensus pattern (45 bp):
TGTTTCAAGGTGAAAAGAATATTTCAAGGCCTCAAAGAGAGAGAA
Found at i:71685 original size:3 final size:3
Alignment explanation
Indices: 71679--71742 Score: 71
Period size: 3 Copynumber: 22.0 Consensus size: 3
71669 AAAAAATATG
* **
71679 TAA TAA TAAA TAA TAA TAA -AA TAA TAA -GA TAA CGA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
71723 TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA
71743 CGATAAAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
2 5 0.10
3 43 0.84
4 3 0.06
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:71734 original size:32 final size:32
Alignment explanation
Indices: 71681--71748 Score: 111
Period size: 32 Copynumber: 2.1 Consensus size: 32
71671 AAAATATGTA
*
71681 ATAATAAATAATAATAAAATAATAAGATAACG
1 ATAATAAATAATAATAAAATAATAAAATAACG
71713 ATAAT-AATAATAATAATAATAATAAAATAACG
1 ATAATAAATAATAATAA-AATAATAAAATAACG
71745 ATAA
1 ATAA
71749 AAAAAACCCG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 11 0.32
32 23 0.68
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.26
Consensus pattern (32 bp):
ATAATAAATAATAATAAAATAATAAAATAACG
Found at i:74565 original size:239 final size:239
Alignment explanation
Indices: 74146--74580 Score: 726
Period size: 239 Copynumber: 1.8 Consensus size: 239
74136 GGTGGACATG
* * * **
74146 CCCTAAGTCGGTGCTGGCCTCAGCCCTCAGTGCACCCTCGGTATGCGTACGCTTTGACCCTGTGT
1 CCCTAAGTCGGTGCTGGCCTCAGCCCTCAGTGCACCCTCGATATGCATAAGCTTCCACCCTGTGT
* * * * *
74211 TCTCCCGATGTGTGCTACCCTCGCCACCAGGTGGCCCCCTTTGTGCACTCATCTCGTTTCTAGGT
66 GCCCCCGATGTGTGCTACCCTCACCACCAAGTGGCCCCCTTTGTGCACTCATCTCGGTTCTAGGT
*
74276 GCACACCCAGTGTGAGTTGACCCCGACCCCGAGTGCGTCCTGTTGCTTGTTGGCTAGAGCCCTCG
131 GCACACCCAGTGTGAATTGACCCCGACCCCGAGTGCGTCCTGTTGCTTGTTGGCTAGAGCCCTCG
74341 GCTCTAGGTGCACCTTGGTGTGCGGTGATCACAATCCTAGGCGA
196 GCTCTAGGTGCACCTTGGTGTGCGGTGATCACAATCCTAGGCGA
* *
74385 CCCTAAGTCGGTGCTGGCCTCGGCCCTCAGTGCACCCTCGATGTGCATAAGCTTCCACCCTGTGT
1 CCCTAAGTCGGTGCTGGCCTCAGCCCTCAGTGCACCCTCGATATGCATAAGCTTCCACCCTGTGT
* *
74450 GCCCCCGATGTGTGCTGCCCTCACCCCCAAGTGGCCCCCTTTGTGCACTCATCTCGGTTCTAGGT
66 GCCCCCGATGTGTGCTACCCTCACCACCAAGTGGCCCCCTTTGTGCACTCATCTCGGTTCTAGGT
*
74515 GCACACCCGGTGTGAATTGACCCCGACCCCGAGTGCGTCCTGTTGCTTGTTGGCTAGAGCCCTCG
131 GCACACCCAGTGTGAATTGACCCCGACCCCGAGTGCGTCCTGTTGCTTGTTGGCTAGAGCCCTCG
74580 G
196 G
74581 TTGACCTTGC
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
239 180 1.00
ACGTcount: A:0.13, C:0.35, G:0.26, T:0.26
Consensus pattern (239 bp):
CCCTAAGTCGGTGCTGGCCTCAGCCCTCAGTGCACCCTCGATATGCATAAGCTTCCACCCTGTGT
GCCCCCGATGTGTGCTACCCTCACCACCAAGTGGCCCCCTTTGTGCACTCATCTCGGTTCTAGGT
GCACACCCAGTGTGAATTGACCCCGACCCCGAGTGCGTCCTGTTGCTTGTTGGCTAGAGCCCTCG
GCTCTAGGTGCACCTTGGTGTGCGGTGATCACAATCCTAGGCGA
Done.