Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006042.1 Hibiscus syriacus cultivar Beakdansim tig00014264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 131952
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:478 original size:12 final size:12
Alignment explanation
Indices: 447--484 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
437 TCCTAAGTTG
447 AAAAAAAGAGAA
1 AAAAAAAGAGAA
*
459 AAAGAAAG-GAA
1 AAAAAAAGAGAA
470 AAATAAAAGAGAA
1 AAA-AAAAGAGAA
483 AA
1 AA
485 CTTTAGAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 6 0.27
12 11 0.50
13 5 0.23
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (12 bp):
AAAAAAAGAGAA
Found at i:2494 original size:12 final size:13
Alignment explanation
Indices: 2466--2506 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
2456 GTCATTTGAT
2466 ATTATA-TATATG
1 ATTATATTATATG
*
2478 TTTATATTATA-G
1 ATTATATTATATG
*
2490 ATTATATTATATA
1 ATTATATTATATG
2503 ATTA
1 ATTA
2507 AACAAACATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
12 16 0.67
13 8 0.33
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (13 bp):
ATTATATTATATG
Found at i:3628 original size:2 final size:2
Alignment explanation
Indices: 3621--3672 Score: 83
Period size: 2 Copynumber: 27.5 Consensus size: 2
3611 TTATTATCAT
3621 TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3662 TA -A TA T- TA TA T
1 TA TA TA TA TA TA T
3673 TATTCTGGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
1 3 0.06
2 44 0.94
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3763 original size:31 final size:28
Alignment explanation
Indices: 3708--3769 Score: 79
Period size: 31 Copynumber: 2.1 Consensus size: 28
3698 TTGTTTTCAT
*
3708 TATTTTAATCTATATATATTTATGTACA
1 TATTTTAATCTATATATATTTATGTAAA
*
3736 TATTTTATATCTTTATTATACTTTATGTAAA
1 TATTTTA-ATCTATA-TATA-TTTATGTAAA
3767 TAT
1 TAT
3770 ATACTTCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 7 0.24
29 6 0.21
30 4 0.14
31 12 0.41
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (28 bp):
TATTTTAATCTATATATATTTATGTAAA
Found at i:3991 original size:16 final size:17
Alignment explanation
Indices: 3972--4009 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
3962 TTTTCGTCTA
3972 TTTATTTT-TGTT-CCTT
1 TTTATTTTCT-TTACCTT
3988 TTTATTTTCTTTACCTT
1 TTTATTTTCTTTACCTT
4005 TTTAT
1 TTTAT
4010 CTTCATGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.11, C:0.13, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTATTTTCTTTACCTT
Found at i:4567 original size:20 final size:21
Alignment explanation
Indices: 4542--4585 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
4532 CAATATTTGA
4542 TTTCTGTTC-GATCCCCC-TTT
1 TTTCTGTTCAG-TCCCCCGTTT
4562 TTTCTGTTCAGTCCCCCGTTT
1 TTTCTGTTCAGTCCCCCGTTT
4583 TTT
1 TTT
4586 TTATGTTCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.05, C:0.32, G:0.11, T:0.52
Consensus pattern (21 bp):
TTTCTGTTCAGTCCCCCGTTT
Found at i:7933 original size:105 final size:107
Alignment explanation
Indices: 7746--8028 Score: 329
Period size: 105 Copynumber: 2.6 Consensus size: 107
7736 AGTTGATGAG
* * *
7746 ATCTTAGAAATCTGACGATAACAAAATAGGTTAATTACTTAATTTGTTATCAATATTATCAACAT
1 ATCTTAGAAATCTGACGATAAC-AAATAAGTTAATTACTTATTTTGTTATAAATATTATCAACAT
* * *
7811 ATTAGGTAGCGCCTAAAATATT-ATCAAAG-TTAGGCTGATGG-
65 ATTAGATAGCGCCTAAAAT-TTCACCAAAGTTTAAGCTGATGGA
* * *
7852 GTCTTAGAAATCCGACGATAACAAATAAGTTAATTACTTATTTTGTTATTAATATTATCAACATA
1 ATCTTAGAAATCTGACGATAACAAATAAGTTAATTACTTATTTTGTTATAAATATTATCAACATA
* *
7917 TTAGATAGCGCTTAAAATTTCACCAAAGTTTAAGTTGATGGA
66 TTAGATAGCGCCTAAAATTTCACCAAAGTTTAAGCTGATGGA
* * * * * * * * * *
7959 AACTTTGAAATCTAATGACAACAAATATGTTAATTTCTTATTTTGCTATAAATAAATATTAACAT
1 ATCTTAGAAATCTGACGATAACAAATAAGTTAATTACTTATTTTGTTATAAAT-ATTATCAACAT
8024 ATTAG
65 ATTAG
8029 GTTGCGCCCA
Statistics
Matches: 150, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
104 2 0.01
105 62 0.41
106 30 0.20
107 42 0.28
108 14 0.09
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (107 bp):
ATCTTAGAAATCTGACGATAACAAATAAGTTAATTACTTATTTTGTTATAAATATTATCAACATA
TTAGATAGCGCCTAAAATTTCACCAAAGTTTAAGCTGATGGA
Found at i:12851 original size:3 final size:3
Alignment explanation
Indices: 12843--12877 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
12833 TCTACAAAAA
12843 TAT TAT TAT T-T TAT TAT TATT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA
12878 ATCAAATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:13384 original size:23 final size:23
Alignment explanation
Indices: 13353--13396 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
13343 ATAAAAGTCA
* *
13353 TAATCGTTTTTAAAAATAATATT
1 TAATCGTTTTCAAAAAAAATATT
*
13376 TAATTGTTTTCAAAAAAAATA
1 TAATCGTTTTCAAAAAAAATA
13397 GTTATGACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (23 bp):
TAATCGTTTTCAAAAAAAATATT
Found at i:18293 original size:15 final size:15
Alignment explanation
Indices: 18253--18295 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
18243 GTATTTAGTG
* *
18253 GGCGGGCGGATGTGG
1 GGCGGGCGGATGCGA
* *
18268 GGAGGGAGGATGCGA
1 GGCGGGCGGATGCGA
18283 GGCGGGCGGATGC
1 GGCGGGCGGATGC
18296 AGGGCGGATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.63, T:0.09
Consensus pattern (15 bp):
GGCGGGCGGATGCGA
Found at i:34849 original size:20 final size:20
Alignment explanation
Indices: 34826--35014 Score: 141
Period size: 20 Copynumber: 9.3 Consensus size: 20
34816 GTTTCCAGAT
34826 TCGCAATGCGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* * ** *
34846 TCGCATTGCAATT-TTCCAAA
1 TCGCAATGCGATTCTGAC-TA
** *
34866 TTCGCGTTGCGATTTTCAGACTA
1 -TCGCAATGCGA--TTCTGACTA
* *
34889 TCGCAATGCGAATAT-A-TAA
1 TCGCAATGCGATTCTGACT-A
*
34908 ATCGCAATGCGATTATGACTA
1 -TCGCAATGCGATTCTGACTA
*
34929 TCGCAATGCAATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* *
34949 TCGCAACGCAATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* *
34969 TCGCAACGAGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* *
34989 TCGCAACGCGATTCTGACTG
1 TCGCAATGCGATTCTGACTA
35009 TCGCAA
1 TCGCAA
35015 CACTGATAGT
Statistics
Matches: 136, Mismatches: 24, Indels: 18
0.76 0.13 0.10
Matches are distributed among these distances:
18 1 0.01
19 4 0.03
20 106 0.78
21 11 0.08
22 10 0.07
23 3 0.02
24 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (20 bp):
TCGCAATGCGATTCTGACTA
Found at i:35015 original size:20 final size:20
Alignment explanation
Indices: 34908--35015 Score: 153
Period size: 20 Copynumber: 5.4 Consensus size: 20
34898 GAATATATAA
* *
34908 ATCGCAATGCGATTATGACT
1 ATCGCAACGCGATTCTGACT
* *
34928 ATCGCAATGCAATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
34948 ATCGCAACGCAATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
34968 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
34988 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
35008 GTCGCAAC
1 ATCGCAAC
35016 ACTGATAGTC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 81 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:35776 original size:21 final size:21
Alignment explanation
Indices: 35752--35806 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
35742 TTTGTAATAA
*
35752 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTCGACT
*
35773 ATCGCAACTCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* *
35794 ATTGCAATGCGAA
1 ATCGCAACGCGAA
35807 TATGTAAATC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:39105 original size:23 final size:23
Alignment explanation
Indices: 39079--39126 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
39069 ATAAAGTACA
*
39079 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
39102 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
39125 AT
1 AT
39127 TTACTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:39530 original size:21 final size:22
Alignment explanation
Indices: 39505--39556 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
39495 ACACTTTACA
*
39505 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
39528 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
39551 ATATAA
1 ATATAA
39557 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:39541 original size:23 final size:23
Alignment explanation
Indices: 39515--39577 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
39505 ATATAACCAC
39515 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
39538 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
39561 TACCTATTACATCATAT
1 TACCTATTACATTATAT
39578 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:39932 original size:21 final size:22
Alignment explanation
Indices: 39907--39958 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
39897 ACACTTTACA
*
39907 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
39930 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
39953 ATATAA
1 ATATAA
39959 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:39943 original size:23 final size:23
Alignment explanation
Indices: 39917--39979 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
39907 ATATAACCAC
39917 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
39940 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
39963 TACCTATTACATCATAT
1 TACCTATTACATTATAT
39980 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:40347 original size:23 final size:23
Alignment explanation
Indices: 40321--40380 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
40311 TAACCACTAT
40321 CTATTACATTATATAAACGATAC
1 CTATTACATTATATAAACGATAC
** *
40344 CTATTACATTATATAAGGGCTAC
1 CTATTACATTATATAAACGATAC
*
40367 CTATTACATCATAT
1 CTATTACATTATAT
40381 GTTTACCTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.37
Consensus pattern (23 bp):
CTATTACATTATATAAACGATAC
Found at i:40440 original size:401 final size:404
Alignment explanation
Indices: 39193--40461 Score: 2331
Period size: 401 Copynumber: 3.2 Consensus size: 404
39183 TATTACATTA
39193 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC----TTT--AAC--AGTGT-
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTA-TGTA
*
39249 -TTCATGTTTTCTACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGT
65 ATTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGT
* *
39313 TTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATATAT--CGTAACGTAAA
130 TTTTATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAA
*
39376 AAAT-AATCATTATACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCT
195 AAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCT
39440 TAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACA
260 TAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACA
39505 ATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTA
325 ATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTA
39570 CATCATATGTTTACC
390 CATCATATGTTTACC
39585 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAA
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAA
*
39650 TTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTT
66 TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTT
39715 TTTATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAAT-A-ATATACCGTAACGTAAAA
131 TTTATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAA
39778 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
196 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
39843 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
261 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
39908 TATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTAC
326 TATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTAC
39973 ATCATATGTTTACC
391 ATCATATGTTTACC
39987 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAA
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAA
*
40052 TTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCAC-AAAAATTATTTGATTG-T
66 TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTT
40115 TTTATATTTTAT-AAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAA
131 TTTATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAA
40179 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
196 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
40244 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
261 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
*
40309 TATAACCACTATCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTAC
326 TATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTAC
40374 ATCATATGTTTACC
391 ATCATATGTTTACC
40388 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAA
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAA
*
40453 TTTATGTTT
66 TTCATGTTT
40462 CAATTTTTTT
Statistics
Matches: 855, Mismatches: 7, Indels: 21
0.97 0.01 0.02
Matches are distributed among these distances:
392 45 0.05
396 3 0.00
398 3 0.00
399 38 0.04
400 16 0.02
401 435 0.51
402 315 0.37
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (404 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAA
TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTT
TTTATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAA
AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
TATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTAC
ATCATATGTTTACC
Found at i:40764 original size:21 final size:22
Alignment explanation
Indices: 40739--40790 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
40729 ACACTTTACA
*
40739 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
40762 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
40785 ATATAA
1 ATATAA
40791 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:40775 original size:23 final size:23
Alignment explanation
Indices: 40749--40811 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
40739 ATATAACCAC
40749 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
40772 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
40795 TACCTATTACATCATAT
1 TACCTATTACATTATAT
40812 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:40852 original size:431 final size:427
Alignment explanation
Indices: 40052--40909 Score: 1662
Period size: 431 Copynumber: 2.0 Consensus size: 427
40042 ACTTATGTAA
*
40052 TTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAATTATTTGATTGTTT
1 TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAATTATTTGATTGTTT
40117 TATATTTTATAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAAT
66 TATATTTTATAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAAT
40182 AAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAA
131 AAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAA
40247 TTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATAT
196 TTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATAT
*
40312 AACCACTATCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATC
261 AACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATC
40377 ATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAA
326 ATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAA
40442 AACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGT
390 AACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGT
40480 TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTT
1 TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC-AAAAATTATTTGATTG-T
40545 TTTATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAA
64 TTTATATTTTAT-AAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAA
40610 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
128 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
40675 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
193 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAA
40740 TATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTAC
258 TATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTAC
40805 ATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTT
323 ATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTT
40870 AAAACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGT
388 AAAACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGT
40910 ACTGCGAATT
Statistics
Matches: 425, Mismatches: 2, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
428 45 0.11
429 16 0.04
430 59 0.14
431 305 0.72
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (427 bp):
TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAATTATTTGATTGTTT
TATATTTTATAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAAT
AAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAA
TTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATAT
AACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATC
ATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTAAA
ACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGT
Found at i:43662 original size:184 final size:184
Alignment explanation
Indices: 43353--43872 Score: 941
Period size: 184 Copynumber: 2.8 Consensus size: 184
43343 TTACCGACAC
* * * *
43353 TTTTAAATGGTATCGACACATTTTTATTCCAATCTGGACATAAAGTACCGACACAATATTATAAA
1 TTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAA
* *
43418 GTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATTACA
66 GTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTTATATTACA
43483 AAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGTCGACACTT
131 AAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGTCGACACTT
43537 TTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAA
1 TTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAA
43602 GTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTTATATTACA
66 GTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTTATATTACA
43667 AAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGTCGACACTT
131 AAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGTCGACACTT
43721 TTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAA
1 TTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAA
*
43786 GTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTTATATTGCA
66 GTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTTATATTACA
* * **
43851 AATTTACCTATTTTATTATAAT
131 AAATTATCTATTACATTATAAT
43873 ATGTTGAAAG
Statistics
Matches: 325, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
184 325 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (184 bp):
TTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAA
GTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTTATATTACA
AAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGTCGACACTT
Found at i:45871 original size:200 final size:199
Alignment explanation
Indices: 45406--47822 Score: 4536
Period size: 199 Copynumber: 12.1 Consensus size: 199
45396 TTTAAATTAG
*
45406 TATCGACACAAACTATATTAATGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
45471 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
45536 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
45601 AAAA
196 AAAA
45605 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
45670 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
45735 CGACACTTTTTTATATATGGATCGACACTTCATGGGTGCACCTTGTTTTTAATTCATTCTGGAAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAA
45800 AAAAA
195 AAAAA
45805 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
45870 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
45935 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGAAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAA
46000 AAAAA
195 AAAAA
46005 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
46070 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
46135 CGACAC-TTTT-TATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
46198 AAAA
196 AAAA
46202 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
46267 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
46332 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTATGG-AAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
46396 AAAA
196 AAAA
*
46400 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
46465 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
46530 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGAAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAA
46595 AAAAA
195 AAAAA
46600 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
46665 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
46730 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACATTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
46795 AAAA
196 AAAA
*
46799 TATCGACACAAACTATATTATTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
46864 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
46929 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
46994 AAAA
196 AAAA
*
46998 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
47063 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
47128 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGAAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAA
47193 AAAAA
195 AAAAA
*
47198 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
47263 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
47328 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
47393 AAAA
196 AAAA
47397 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
47462 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
47527 CGACAATTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGG-AAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
47591 AAAA
196 AAAA
*
47595 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
47660 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
47725 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAGA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
47790 AAAA
196 AAAA
*
47794 TATCGACACAAACTATATTAGTATCGACA
1 TATCGACACAAACTATATTAGTGTCGACA
47823 TGACCCTTAA
Statistics
Matches: 2175, Mismatches: 36, Indels: 14
0.98 0.02 0.01
Matches are distributed among these distances:
197 191 0.09
198 343 0.16
199 907 0.42
200 734 0.34
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
AAAA
Found at i:46147 original size:399 final size:398
Alignment explanation
Indices: 45406--47822 Score: 4554
Period size: 399 Copynumber: 6.1 Consensus size: 398
45396 TTTAAATTAG
*
45406 TATCGACACAAACTATATTAATGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
45471 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
45536 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
45601 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
45666 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
45731 GGATCGACACTTTTTTATATATGGATCGACACTTCATGGGTGCACCTTGTTTTTAATTCATTCTG
326 GGATCGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
45796 GAAAAAAAA
390 GAAAAAAAA
45805 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
45870 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
45935 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGAAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAA
46000 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
195 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
*
46065 GTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTT
260 GTATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTT
*
46130 GGGATCGACAC-TTTT-TATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTG
325 GGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
*
46193 GGAAAAAAA
390 GAAAAAAAA
46202 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
46267 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
46332 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTATGG-AAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
*
46396 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
46461 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
46526 GGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
326 GGATCGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
46591 GAAAAAAAA
390 GAAAAAAAA
46600 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
46665 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
46730 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACATTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
*
46795 AAAATATCGACACAAACTATATTATTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
*
46860 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
46925 GGATCGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
46990 AAAAAAAA
391 AAAAAAAA
*
46998 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
47063 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
47128 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGAAA
131 CGACAC-TTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAA
*
47193 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCG
195 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
47258 GTATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTT
260 GTATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTT
47323 GGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
325 GGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
47388 GAAAAAAAA
390 GAAAAAAAA
47397 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
47462 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
47527 CGACAATTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGG-AAA
131 CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
*
47591 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
47656 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
*
47721 GGATCGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
*
47786 AAGAAAAA
391 AAAAAAAA
*
47794 TATCGACACAAACTATATTAGTATCGACA
1 TATCGACACAAACTATATTAGTGTCGACA
47823 TGACCCTTAA
Statistics
Matches: 1975, Mismatches: 37, Indels: 14
0.97 0.02 0.01
Matches are distributed among these distances:
395 141 0.07
396 53 0.03
397 425 0.22
398 498 0.25
399 661 0.33
400 197 0.10
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (398 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTTGTTTTTAATTCATTCTGGAAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGG
AAAAAAAA
Found at i:47930 original size:19 final size:19
Alignment explanation
Indices: 47902--47945 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
47892 ATTCACATAT
47902 AAAA-TATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
47920 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
47939 AAAATTA
1 AAAATTA
47946 ACTCGACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:49773 original size:33 final size:33
Alignment explanation
Indices: 49736--49801 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
49726 CATCTTAATA
*
49736 TCACCCCTTAACACCGAAACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
***
49769 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
49802 CCATCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.45, G:0.02, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCGAAACTTCTTTCACCACT
Found at i:52158 original size:20 final size:19
Alignment explanation
Indices: 52112--52158 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
52102 TCCGGTATCA
*
52112 TTTTACCGTTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
52131 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
52152 TTTTACC
1 TTTTACC
52159 TGTTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.19, C:0.17, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:52304 original size:20 final size:20
Alignment explanation
Indices: 52278--52323 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
52268 CACTTTTAAA
52278 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
52297 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
52318 TTTACC
1 TTTACC
52324 TGGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:52784 original size:225 final size:225
Alignment explanation
Indices: 52389--52833 Score: 720
Period size: 225 Copynumber: 2.0 Consensus size: 225
52379 TTAAAACTGC
52389 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
1 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
**
52454 TTAATTTAATAATTTAATTTACACAAAATTTTATTTGATTGTTTTGATATTTTATAAAATATTTA
66 TTAATTTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTTA
*
52519 GCATTTAAATTTAACAATATTAACCAAATAT-AATAAT-AATATGTTTTCAACAGTGAAATAAGT
131 GCATTTAAATTTAACAATATTAACCAAATATAAATAATAAATATATTTTC-ACAGTGAAATAAGT
*
52582 ATGGACACTTTTATAAAAATGATATATACTT
195 ATGGACACTTTTATAAAAAGGATATATACTT
52613 TTTTGAAAGTTATGTAATTTATGTTTCAAATTT-TTTAATAGTGTTTCATGTTTTCCACCTACAA
1 TTTT-AAAGTTATGTAATTTATGTTTC-AATTTATTTAATAGTGTTTCATGTTTTCCACCTACAA
*
52677 TATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATT
64 TATTAATTTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTAT-AAA-A-T
* *
52742 ATTTAG-ATTTTAAATTTAACAATATTAACTAAAGAT-AATAATAAATATATTTTCACAGTGAAA
126 ATTTAGCA-TTTAAATTTAACAATATTAACCAAATATAAATAATAAATATATTTTCACAGTGAAA
*
52805 TAAGTATGGACATTTTTATAAAAAGGATA
190 TAAGTATGGACACTTTTATAAAAAGGATA
52834 GATAATTTAC
Statistics
Matches: 206, Mismatches: 8, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
224 4 0.02
225 107 0.52
226 8 0.04
227 2 0.01
228 75 0.36
229 10 0.05
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.45
Consensus pattern (225 bp):
TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
TTAATTTAATAATTTAATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTTA
GCATTTAAATTTAACAATATTAACCAAATATAAATAATAAATATATTTTCACAGTGAAATAAGTA
TGGACACTTTTATAAAAAGGATATATACTT
Found at i:61006 original size:21 final size:22
Alignment explanation
Indices: 60975--61015 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
60965 TGCGGATGGT
60975 TTCGCATCTT-GCGACGGTGTTA
1 TTCGCATCTTGGCGA-GGTGTTA
60997 TTCGC-TCTTGGCGAGGTGT
1 TTCGCATCTTGGCGAGGTGT
61016 GTGGTAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.10, C:0.22, G:0.32, T:0.37
Consensus pattern (22 bp):
TTCGCATCTTGGCGAGGTGTTA
Found at i:62259 original size:3 final size:3
Alignment explanation
Indices: 62251--62292 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
62241 TCATTTCGTT
*
62251 TTA TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
62293 AATAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:63679 original size:3 final size:3
Alignment explanation
Indices: 63671--63700 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
63661 TTTACTCTTA
*
63671 ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
63701 TAGTCATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:71847 original size:114 final size:115
Alignment explanation
Indices: 71640--71863 Score: 353
Period size: 114 Copynumber: 2.0 Consensus size: 115
71630 TGCCATGTGA
* * *
71640 TCATAGTTAGAAATAAGAAGACTCAATAGCATCTTTTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 TCATAGTTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTG
* *
71705 ATTTGGTATGAACCCCAAAACCAATCATT-GAATTTGAAAGATGAAGTTGC
66 ATTCGGTAGGAACCCCAAAACCAATCATTGGAA-TTGAAAGATGAAGTTGC
*
71755 TCATAG-TAGAAATAAGGAGACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTG
1 TCATAGTTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTG
* *
71819 GTTCGGTAGGAACCCCAGAACCAATCATTGGAATTGAAAGATGAA
66 ATTCGGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGAA
71864 CTGCATGATC
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
114 91 0.91
115 9 0.09
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (115 bp):
TCATAGTTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTG
ATTCGGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGAAGTTGC
Found at i:72958 original size:76 final size:76
Alignment explanation
Indices: 72819--72961 Score: 198
Period size: 76 Copynumber: 1.9 Consensus size: 76
72809 ATAAATGTTG
* * * *
72819 GGGCATGCTGAAAACCCTTGTCAATCAGAATCAGGAATGTTGATGTATCCTGGACGTTTATATCA
1 GGGCATGCTGAAAACCCTTGTCAATCAGAATCAAGAATGTTGATGTATCCTGAACGCTCATATCA
72884 GCAAAATGCTA
66 GCAAAATGCTA
* * **
72895 GGGCATGCTGAAAGCCCCTT-TCAATCAGAATGAAGAATGTTGATGTATTTTGAACGCTCATATC
1 GGGCATGCTGAAA-ACCCTTGTCAATCAGAATCAAGAATGTTGATGTATCCTGAACGCTCATATC
72959 AGC
65 AGC
72962 CAATATTGGG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
76 53 0.91
77 5 0.09
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (76 bp):
GGGCATGCTGAAAACCCTTGTCAATCAGAATCAAGAATGTTGATGTATCCTGAACGCTCATATCA
GCAAAATGCTA
Found at i:75278 original size:76 final size:76
Alignment explanation
Indices: 75152--76317 Score: 1942
Period size: 76 Copynumber: 15.4 Consensus size: 76
75142 CTATTTCCCA
75152 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
75217 AGCCTTAGGGT
66 AGCCTCAGGGT
*
75228 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
75293 AGCCTCAGGGT
66 AGCCTCAGGGT
*
75304 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGATCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
75369 AGCCTTAGGGT
66 AGCCTCAGGGT
* *
75380 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTTGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
75445 AGCCTCATGGT
66 AGCCTCAGGGT
* *
75456 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTTGGGATCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
75521 AGCCTCAGGGT
66 AGCCTCAGGGT
*
75532 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGATCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
75597 AGCCTTAGGGT
66 AGCCTCAGGGT
*
75608 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGATCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
75673 AGCCTCAGGGT
66 AGCCTCAGGGT
* *
75684 CATCTGTAAGTCCTTCAGTGCCTGATGTTTCCAAAAAGCCTTCGGGATCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
75749 AGCCTCAGGGT
66 AGCCTCAGGGT
*
75760 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGATCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
75825 AGCCTTAGGGT
66 AGCCTCAGGGT
*
75836 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
75901 AGCCTTAGGGT
66 AGCCTCAGGGT
* * *
75912 CATCTGTAAGTCCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTCTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
75977 AGCCTCAGGGT
66 AGCCTCAGGGT
* * *
75988 CGTCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
*
76053 AACCCTCAGGGT
65 AAGCCTCAGGGT
* *
76065 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGTAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
76130 ACCCTCAGGGT
66 AGCCTCAGGGT
*
76141 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
76206 ACCCTCAGGGT
66 AGCCTCAGGGT
* * * * *
76217 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAAGCCTTCAGGAGCTTTTTGA--TCTT-A
1 CATCTGTAAGTCCTTCAGTGCATGATG-TTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
76279 AAGCCTCAGGGT
65 AAGCCTCAGGGT
* * * *
76291 CATCTATAAGACCTACAGTGCAAGATG
1 CATCTGTAAGTCCTTCAGTGCATGATG
76318 ATAAGACTTC
Statistics
Matches: 1046, Mismatches: 42, Indels: 6
0.96 0.04 0.01
Matches are distributed among these distances:
74 37 0.04
75 3 0.00
76 907 0.87
77 99 0.09
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTCAGGGT
Found at i:76498 original size:3 final size:3
Alignment explanation
Indices: 76490--76528 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
76480 TCATTTCGTT
*
76490 TTA TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
76529 AATAAAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:77585 original size:15 final size:16
Alignment explanation
Indices: 77558--77587 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
77548 TTTAATTCGG
77558 TTATTTAATTTTAGTT
1 TTATTTAATTTTAGTT
77574 TTATTT-ATTTTAGT
1 TTATTTAATTTTAGT
77588 CCTTTATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (16 bp):
TTATTTAATTTTAGTT
Found at i:77914 original size:3 final size:3
Alignment explanation
Indices: 77906--77938 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
77896 TTTACTCTTA
*
77906 ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
77939 TAGTCATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:79797 original size:59 final size:59
Alignment explanation
Indices: 79729--79846 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
79719 GGGTATGAAT
79729 TTAAAACTTTAAAGTTTGTTCTTCATTACAGGTCCTAGGTAGAACCCGTCCATTAACAC
1 TTAAAACTTTAAAGTTTGTTCTTCATTACAGGTCCTAGGTAGAACCCGTCCATTAACAC
*
79788 TTAAAACTTTAAAGTTTGTTCTTCATTACAGGTCCTAGGTAGAACCCGTCCGTTAACAC
1 TTAAAACTTTAAAGTTTGTTCTTCATTACAGGTCCTAGGTAGAACCCGTCCATTAACAC
79847 CTAGATTTTC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (59 bp):
TTAAAACTTTAAAGTTTGTTCTTCATTACAGGTCCTAGGTAGAACCCGTCCATTAACAC
Found at i:84698 original size:34 final size:34
Alignment explanation
Indices: 84626--84699 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 34
84616 CTTAAAGGTT
* * **
84626 TTAAAATGTAAATTAGATAATTCAAACATAGATT
1 TTAAAATGTAAATTACATAATTCAAACATAAAAC
* * *
84660 TTAAAATTTAAATTACATAATTTAAATATAAAAC
1 TTAAAATGTAAATTACATAATTCAAACATAAAAC
84694 TTAAAA
1 TTAAAA
84700 AATGCAAGTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.36
Consensus pattern (34 bp):
TTAAAATGTAAATTACATAATTCAAACATAAAAC
Found at i:90345 original size:107 final size:106
Alignment explanation
Indices: 90154--90431 Score: 318
Period size: 107 Copynumber: 2.6 Consensus size: 106
90144 CACATTTAAC
* *
90154 TCTAATTAACTTA-TATTTAAAATAAAAACAAAAAATGAAACAATAAAA-ATTACACTAAACTTA
1 TCTAA-TAA-TTATTATTTAAAATAAAAA-TAAAAATGAAACAATAAAATTTTACACTAAACTTA
* * * * *
90217 CCACCACTCAAATACGATTTAATATGTAAAATTAAATTAAATAG
63 CAACCACCCAAATACGATTTAATATGTAAAATCAAAATAAATAA
*
90261 TCTAATAATTATTATTTAAAATAAAAATAATAAAT-AAACAATAAAATTTTA-ATTAAACTTATC
1 TCTAATAATTATTATTTAAAATAAAAATAA-AAATGAAACAATAAAATTTTACACTAAACTTA-C
* * *
90324 AAACCACCCGAATAC-AGTTTAATCTGTAAAATCAAAATAATTAA
64 -AACCACCCAAATACGA-TTTAATATGTAAAATCAAAATAAATAA
90368 TCTAATCAATT-TATATTTAAAATAAAAATTAAAAATGAAACAATAAAA-TTTACACTAAACTTA
1 TCTAAT-AATTAT-TATTTAAAATAAAAA-TAAAAATGAAACAATAAAATTTTACACTAAACTTA
90431 C
63 C
90432 CAGATCACTT
Statistics
Matches: 148, Mismatches: 12, Indels: 21
0.82 0.07 0.12
Matches are distributed among these distances:
105 25 0.17
106 27 0.18
107 45 0.30
108 28 0.19
109 23 0.16
ACGTcount: A:0.54, C:0.12, G:0.03, T:0.31
Consensus pattern (106 bp):
TCTAATAATTATTATTTAAAATAAAAATAAAAATGAAACAATAAAATTTTACACTAAACTTACAA
CCACCCAAATACGATTTAATATGTAAAATCAAAATAAATAA
Found at i:90651 original size:25 final size:25
Alignment explanation
Indices: 90623--90679 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
90613 TCGTGTGATG
*
90623 CATTATTGGTGCACAATAATGACAC
1 CATTATTAGTGCACAATAATGACAC
* * **
90648 CATTATTAGTGCCCAATAGTGGTAC
1 CATTATTAGTGCACAATAATGACAC
90673 CATTATT
1 CATTATT
90680 TGCTTGTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (25 bp):
CATTATTAGTGCACAATAATGACAC
Found at i:90934 original size:39 final size:40
Alignment explanation
Indices: 90850--90959 Score: 100
Period size: 39 Copynumber: 2.8 Consensus size: 40
90840 CTACTATTGG
* * **
90850 CTTGAAGACGCCATGCACTCCTGGAGTCTTCTCCATTGGT
1 CTTGAAGACGCCATGCAGTCCTGGAGTCTTCTACATTGAA
* * *
90890 C-TGAAGACGCCATGCAGTCGTGGAGTCTTC-AGATTTAA
1 CTTGAAGACGCCATGCAGTCCTGGAGTCTTCTACATTGAA
** *
90928 CTTGAAGACATCATGCAGCTCC-GGAATCTTCT
1 CTTGAAGACGCCATGCAG-TCCTGGAGTCTTCT
90960 GAAGACACAT
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
38 4 0.07
39 49 0.88
40 3 0.05
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CTTGAAGACGCCATGCAGTCCTGGAGTCTTCTACATTGAA
Found at i:94283 original size:20 final size:20
Alignment explanation
Indices: 94243--94289 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
94233 AATTCAAATG
*
94243 GGCGCATGATTTCTTCAAAA
1 GGCGCATGATTTCTTAAAAA
94263 GGCGCATGATTT-TTAACAAA
1 GGCGCATGATTTCTTAA-AAA
*
94283 GGGGCAT
1 GGCGCAT
94290 AATTCGATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (20 bp):
GGCGCATGATTTCTTAAAAA
Found at i:102549 original size:42 final size:42
Alignment explanation
Indices: 102414--102541 Score: 220
Period size: 42 Copynumber: 3.0 Consensus size: 42
102404 TGATCAAAAC
* * *
102414 ACATTGGCTGCTGATAAAAATAACCTCCTCTATAGAAATCAT
1 ACATTGGCTGCTGATAATAATATCCTCCTCCATAGAAATCAT
102456 ACATTGGCTGCTGATAATAATATCCTCCTCCATAGAAATCAT
1 ACATTGGCTGCTGATAATAATATCCTCCTCCATAGAAATCAT
*
102498 ACATTGGCTGCTGATAATAATATCCTCCTCCACAGAAATCAT
1 ACATTGGCTGCTGATAATAATATCCTCCTCCATAGAAATCAT
102540 AC
1 AC
102542 CAAGGCTGGT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (42 bp):
ACATTGGCTGCTGATAATAATATCCTCCTCCATAGAAATCAT
Found at i:108786 original size:15 final size:15
Alignment explanation
Indices: 108766--108796 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
108756 GTCGTATGCA
108766 CTTACCGGTGCTGCC
1 CTTACCGGTGCTGCC
108781 CTTACCGGTGCTGCC
1 CTTACCGGTGCTGCC
108796 C
1 C
108797 CGTCCAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.42, G:0.26, T:0.26
Consensus pattern (15 bp):
CTTACCGGTGCTGCC
Found at i:115478 original size:22 final size:22
Alignment explanation
Indices: 115436--115486 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
115426 AAAAGTTAAA
*
115436 ATTTTTAAATTTTAATCATAATT
1 ATTTTAAAATTTTAA-CATAATT
115459 ATTTTAAATATTTTAA-ATAATT
1 ATTTTAAA-ATTTTAACATAATT
*
115481 TTTTTA
1 ATTTTA
115487 TTATATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 11 0.44
23 7 0.28
24 7 0.28
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTTTAAAATTTTAACATAATT
Found at i:117632 original size:41 final size:41
Alignment explanation
Indices: 117529--117882 Score: 321
Period size: 41 Copynumber: 8.6 Consensus size: 41
117519 ACTTTAGTGG
* *
117529 TTTAGTGGCGTTTTTATACAAACGCCGCCAAAGTA-TAGT-C
1 TTTAGTGGCGTTTTTATACAAACGCCGCTATAG-ACTAGTAC
* * * * * *
117569 TTTAGTCGCGTTTTCAAAACAAACGCCACTATAGATTAGTAT
1 TTTAGTGGCGTTTT-TATACAAACGCCGCTATAGACTAGTAC
* * *
117611 TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGAATA-TAT
1 TTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTAGTAC
* *
117651 TTTAGTGGCGTTTTT-TGAAATAATGCCGCTATAGACTAGTAC
1 TTTAGTGGCGTTTTTAT-ACA-AACGCCGCTATAGACTAGTAC
* * *
117693 TTTTGTGGCATTTTTATACAAACGCCGCTAAAGTACTA-TAC
1 TTTAGTGGCGTTTTTATACAAACGCCGCTATAG-ACTAGTAC
* *
117734 TTTAGTGGCATTTTTGA-ACAAACGCCTCTATAGACTAGTAC
1 TTTAGTGGCGTTTTT-ATACAAACGCCGCTATAGACTAGTAC
* *
117775 ATTT-GTGGCGTTTTTATACAAATGTCGCTATAGACTAGTAC
1 -TTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTAGTAC
* * *
117816 TTTAGTGGCGTTTGTATACAACAACTCCGCTAAAGACT-GTAC
1 TTTAGTGGCGTTTTTATAC-A-AACGCCGCTATAGACTAGTAC
* *
117858 TTTTA-TGGCATTTTTAGGACAAACG
1 -TTTAGTGGCGTTTTTA-TACAAACG
117883 GCGCAAGTTT
Statistics
Matches: 258, Mismatches: 39, Indels: 33
0.78 0.12 0.10
Matches are distributed among these distances:
39 1 0.00
40 42 0.16
41 143 0.55
42 53 0.21
43 19 0.07
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (41 bp):
TTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTAGTAC
Found at i:120766 original size:24 final size:24
Alignment explanation
Indices: 120732--120786 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
120722 ATAGCTGTGA
*
120732 TTTTTCTTAGCTACTGCAGTTTGT
1 TTTTTCATAGCTACTGCAGTTTGT
120756 TTTTTCATAGCTACTGCAGTTTGT
1 TTTTTCATAGCTACTGCAGTTTGT
120780 TTTTTCA
1 TTTTTCA
120787 AGTTGCCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.15, C:0.16, G:0.15, T:0.55
Consensus pattern (24 bp):
TTTTTCATAGCTACTGCAGTTTGT
Found at i:122745 original size:42 final size:42
Alignment explanation
Indices: 122698--122979 Score: 275
Period size: 42 Copynumber: 6.7 Consensus size: 42
122688 TTTAATTTAT
* * * *
122698 TATAGATCTGCCCTTTTGTGGCTTTTGATATAAAAACGCCGC
1 TATAGATCTGACCTTTTGCGGCGTTTGTTATAAAAACGCCGC
* * *
122740 TATAGATCTGTCCTTTTGCGGCGTTTGATCT-AAAACGCCGC
1 TATAGATCTGACCTTTTGCGGCGTTTGTTATAAAAACGCCGC
* * *
122781 TATAGATATTGACCTTTTGCGACGTTTGTTCCA-AAAAACGACGC
1 TATAGAT-CTGACCTTTTGCGGCGTTTGTT--ATAAAAACGCCGC
* * * **
122825 TATAGA-CTGACATTTTACTGCGTTTGTTCCAAAAACGCCGC
1 TATAGATCTGACCTTTTGCGGCGTTTGTTATAAAAACGCCGC
* * *
122866 TATAGGTCTGACCTTTTGCGGCTTTTG-TATCCAAAACGCCGC
1 TATAGATCTGACCTTTTGCGGCGTTTGTTAT-AAAAACGCCGC
* * *
122908 TATATATCTGACCTTTTGCGGCGTTTGTTACAAAAACACCGC
1 TATAGATCTGACCTTTTGCGGCGTTTGTTATAAAAACGCCGC
* * *
122950 TATAGATATCGACATTTTGTGGCGTTTGTT
1 TATAGATCT-GACCTTTTGCGGCGTTTGTT
122980 CCAAAAAAAC
Statistics
Matches: 196, Mismatches: 35, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
41 33 0.17
42 128 0.65
43 20 0.10
44 15 0.08
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (42 bp):
TATAGATCTGACCTTTTGCGGCGTTTGTTATAAAAACGCCGC
Found at i:122848 original size:84 final size:86
Alignment explanation
Indices: 122729--123014 Score: 321
Period size: 84 Copynumber: 3.3 Consensus size: 86
122719 CTTTTGATAT
* * *
122729 AAAAACGCCGCTATAGATCTGTCCTTTTGCGGCGTTTGAT-CTAAAACGCCGCTATAGATATTGA
1 AAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTGTTACAAAAACGCCGCTATAGATATTGA
*
122793 CCTTTTGCGACGTTTGTTCCA
66 CCTTTTGCGGCGTTTGTTCCA
* * * * * * *
122814 AAAAACGACGCTATAGA-CTGACATTTTACTGCGTTTGTTCCAAAAACGCCGCTATAGGT-CTGA
1 AAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTGTTACAAAAACGCCGCTATAGATATTGA
*
122877 CCTTTTGCGGCTTTTGTATCC-
66 CCTTTTGCGGCGTTTGT-TCCA
* * *
122898 -AAAACGCCGCTATATATCTGACCTTTTGCGGCGTTTGTTACAAAAACACCGCTATAGATATCGA
1 AAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTGTTACAAAAACGCCGCTATAGATATTGA
* *
122962 CATTTTGTGGCGTTTGTTCCAA
66 CCTTTTGCGGCGTTTGTTCC-A
* * * *
122984 AAAAACACCACGATAGATCATGACCTATTGC
1 AAAAACGCCGCTATAGATC-TGACCTTTTGC
123015 AGTGTTTTCT
Statistics
Matches: 164, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
83 14 0.09
84 74 0.45
85 52 0.32
87 14 0.09
88 10 0.06
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (86 bp):
AAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTGTTACAAAAACGCCGCTATAGATATTGA
CCTTTTGCGGCGTTTGTTCCA
Found at i:122924 original size:126 final size:126
Alignment explanation
Indices: 122729--122986 Score: 355
Period size: 126 Copynumber: 2.0 Consensus size: 126
122719 CTTTTGATAT
* *
122729 AAAAACGCCGCTATAGATCTGTCCTTTTGCGGCGTTTGATCTAAAACGCCGCTATAGATATTGAC
1 AAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTGATCCAAAACGCCGCTATA-ATATTGAC
* *
122794 CTTTTGCGACGTTTGTTCCAAAAA-ACGACGCTATAGA-CT-GACATTTTACT-GCGTTTGTTCC
65 CTTTTGCGACGTTTGTTACAAAAACAC--CGCTATAGATATCGACATTTT-CTGGCGTTTGTTCC
* *
122855 AAAAACGCCGCTATAGGTCTGACCTTTTGCGGCTTTTGTATCCAAAACGCCGCTAT-ATATCTGA
1 AAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTG-ATCCAAAACGCCGCTATAATAT-TGA
* *
122919 CCTTTTGCGGCGTTTGTTACAAAAACACCGCTATAGATATCGACATTTTGTGGCGTTTGTTCC
64 CCTTTTGCGACGTTTGTTACAAAAACACCGCTATAGATATCGACATTTTCTGGCGTTTGTTCC
122982 AAAAA
1 AAAAA
122987 AACACCACGA
Statistics
Matches: 118, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
125 13 0.11
126 63 0.53
127 42 0.36
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (126 bp):
AAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTGATCCAAAACGCCGCTATAATATTGACC
TTTTGCGACGTTTGTTACAAAAACACCGCTATAGATATCGACATTTTCTGGCGTTTGTTCC
Found at i:123549 original size:18 final size:18
Alignment explanation
Indices: 123500--123555 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 18
123490 GGATTAATTT
*
123500 TATTTATT-TTATAAAAA
1 TATTTATTATTATAATAA
123517 TA-TTATTATT-T--TAA
1 TATTTATTATTATAATAA
123531 TATTTATTATTATAATAA
1 TATTTATTATTATAATAA
123549 TAATTTA
1 T-ATTTA
123556 ATTAAATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
14 4 0.12
15 8 0.25
16 7 0.22
17 4 0.12
18 4 0.12
19 5 0.16
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTATTATTATAATAA
Found at i:123564 original size:31 final size:31
Alignment explanation
Indices: 123500--123565 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
123490 GGATTAATTT
* * *
123500 TATTTATTTTATAAAAATATTATTATTTTAA
1 TATTTATTTTATAAAAATAATATTAATTAAA
*
123531 TATTTATTATTATAATAATAAT-TTAATTAAA
1 TATTTATT-TTATAAAAATAATATTAATTAAA
123562 TATT
1 TATT
123566 CTAAGATTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 19 0.63
32 11 0.37
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (31 bp):
TATTTATTTTATAAAAATAATATTAATTAAA
Found at i:125824 original size:19 final size:18
Alignment explanation
Indices: 125791--125827 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
125781 TTAATTCATT
*
125791 TTTATTTCGTATTGATTA
1 TTTATATCGTATTGATTA
125809 TTTATATCGATATTGATTA
1 TTTATATCG-TATTGATTA
125828 ACCCTATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (18 bp):
TTTATATCGTATTGATTA
Done.