genome.fa.s6043.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006043.1 Hibiscus syriacus cultivar Beakdansim tig00014279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63785

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1873--1996	20	5.6	20	69	20	86	44	10	23	21	1.83
1859--2190	46	7.3	46	82	6	379	44	11	20	23	1.83
1891--2017	26	5.3	26	66	21	89	45	11	22	20	1.83
1859--2172	136	2.3	138	82	6	393	44	10	21	23	1.83
14472--14514	21	2.2	19	88	12	61	41	16	16	25	1.88
18631--18680	21	2.5	20	81	12	57	20	8	12	60	1.57
25150--25194	5	8.6	5	80	9	54	17	4	4	73	1.17
29926--30115	82	2.3	80	77	6	191	33	15	18	33	1.92
29966--30124	82	1.9	83	83	1	203	32	16	19	30	1.94
32639--32841	44	4.6	43	81	6	210	23	12	23	40	1.88
32639--32859	88	2.5	87	79	3	239	23	11	23	40	1.88
33423--33508	45	1.9	45	97	0	163	48	13	3	33	1.60
33420--33519	45	2.2	43	88	10	155	51	12	3	34	1.54
35767--35806	21	1.9	21	94	0	71	27	0	20	52	1.46
39822--39947	67	1.9	65	93	3	216	41	9	11	37	1.75
40182--40244	27	2.3	28	76	17	78	58	22	3	15	1.51
41373--41438	31	2.1	31	94	0	114	19	16	25	37	1.93
43024--43061	20	1.9	20	84	10	51	28	7	2	60	1.38
44286--44342	20	2.8	20	73	7	53	31	14	24	29	1.94
44310--44396	41	2.1	41	85	4	113	22	17	28	31	1.97
44286--44384	21	4.8	21	68	15	64	28	14	25	32	1.94
49506--49558	17	3.0	18	78	13	65	32	15	30	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52990--53055	17	3.9	17	76	9	64	27	15	30	27	1.96
53172--53237	30	2.2	30	83	5	80	42	16	6	34	1.73
59644--59683	21	1.9	21	89	0	62	25	40	25	10	1.86

Tables:   1

The End!