Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006044.1 Hibiscus syriacus cultivar Beakdansim tig00014291_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78754

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
491--602
36
3.2
36
87
3
156
32
35
3
28
1.74
573--641
33
2.1
33
83
5
86
30
36
1
31
1.67
6083--6195
36
3.2
36
86
3
149
32
34
3
29
1.75
6166--6234
33
2.1
33
86
5
95
30
34
1
33
1.67
6536--6620
11
7.2
12
67
26
56
30
2
36
30
1.70
6535--6639
36
2.9
36
91
1
167
29
3
36
30
1.75
6553--6638
11
7.2
12
73
22
58
30
2
37
30
1.70
8128--8176
20
2.5
20
90
3
73
30
10
10
48
1.70
12109--12143
18
1.9
18
88
0
52
48
25
2
22
1.64
12466--12501
15
2.4
15
90
0
54
44
0
5
50
1.25
12618--12701
42
2.0
42
100
0
168
26
16
14
42
1.86
14150--14193
18
2.5
18
74
3
54
63
13
13
9
1.51
16911--16994
42
2.0
42
100
0
168
26
16
14
42
1.86
18910--18945
15
2.5
15
95
4
65
16
33
11
38
1.84
19699--19731
17
1.9
17
100
0
66
39
24
0
36
1.56
21173--21338
80
2.1
77
79
7
174
41
8
5
44
1.57
23806--23858
22
2.6
21
88
8
74
35
13
5
45
1.67
24585--24634
18
2.8
17
82
11
55
76
6
14
4
1.13
34587--34640
14
3.6
15
82
9
74
9
12
5
72
1.27
40736--40782
20
2.3
20
96
0
85
38
19
25
17
1.92
43027--43055
15
2.0
15
93
6
51
75
3
20
0
0.94
44660--44711
7
6.9
7
76
23
52
82
9
7
0
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44658--44711
15
3.4
16
87
10
67
81
11
7
0
0.87
44686--44723
20
1.9
20
88
0
58
78
10
10
0
0.95
51562--51591
13
2.4
13
94
5
53
43
0
30
26
1.55
56762--56816
16
3.4
16
76
20
53
63
0
18
18
1.31
56776--56830
16
3.4
16
75
24
53
61
0
23
14
1.33
57034--57059
13
2.0
13
100
0
52
38
0
38
23
1.55
57403--57445
20
2.2
20
87
4
61
51
6
9
32
1.61
58151--58189
20
1.9
21
84
5
53
48
7
17
25
1.74
60772--60829
28
2.2
26
81
12
64
8
20
3
67
1.33
60863--60896
17
2.0
17
88
11
52
0
11
5
82
0.83
61190--61229
19
2.0
20
90
4
64
65
0
10
25
1.24
68463--68508
23
2.0
21
84
12
56
32
13
17
36
1.88
69765--69793
15
2.0
15
93
6
51
0
20
3
75
0.94
69786--69847
27
2.2
28
78
13
74
11
17
11
59
1.60
73099--73131
14
2.3
15
89
5
50
78
12
9
0
0.95

Tables:   1

The End!