genome.fa.s6045.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006045.1 Hibiscus syriacus cultivar Beakdansim tig00014296_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81532

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10813--10933	64	1.9	63	89	1	188	37	22	16	23	1.94
10821--10952	64	2.1	64	80	4	142	38	22	15	23	1.92
10929--10984	25	2.2	25	96	0	103	42	14	16	26	1.86
12558--12616	23	2.6	23	83	0	73	18	27	27	27	1.98
16934--17319	182	2.1	184	91	2	618	42	3	8	46	1.49
24295--24382	27	3.4	26	82	9	108	38	22	25	13	1.91
24295--24366	24	2.9	24	85	6	90	38	20	26	13	1.90
26465--26572	32	3.4	31	81	5	117	18	25	28	27	1.98
26513--26596	31	2.7	32	83	3	98	23	25	25	26	2.00
30407--30712	51	6.3	50	76	12	264	25	24	21	28	1.99
30484--30559	39	1.9	39	83	0	98	28	23	25	22	1.99
30569--30647	24	3.2	24	66	15	61	25	27	18	27	1.98
30573--30657	27	3.3	27	68	15	79	27	23	21	28	1.99
30579--30730	48	3.1	48	79	6	146	24	26	21	28	1.99
30523--30758	99	2.3	101	81	7	250	25	26	21	27	1.99
30574--30757	51	3.7	50	76	7	158	25	25	20	28	1.99
35085--35153	23	3.0	23	86	0	84	26	21	28	23	1.99
36334--36381	15	3.3	14	82	5	51	45	16	0	37	1.48
36779--36821	21	2.0	21	82	8	52	16	23	27	32	1.96
36836--37405	285	2.0	285	96	0	1041	32	22	5	38	1.77
40386--40454	23	3.0	23	73	12	61	27	26	23	23	2.00
41393--41428	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54502--54531	13	2.4	13	94	5	53	26	30	0	43	1.55
59850--59888	20	2.1	19	85	9	53	48	2	0	48	1.15
69750--69789	15	2.5	17	80	15	50	35	5	10	50	1.58
71708--71792	23	3.7	23	79	3	98	24	12	20	42	1.87
73670--73739	30	2.4	30	95	4	126	47	4	0	48	1.21
77541--77603	29	2.2	30	91	5	103	36	26	4	31	1.78
80879--80945	20	3.3	20	80	0	89	31	23	26	17	1.97
80967--81047	20	4.0	20	76	16	76	24	19	32	23	1.98
81007--81056	21	2.4	20	83	6	64	22	16	40	22	1.91

Tables:   1

The End!